Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0976000 Oryza sativa ssp. japonica HOM05D003665 ORTHO05D004387 0.0e+00 1116.3 568 100.0
MBI05_g08786_MAGBIO Magnolia biondii HOM05D003665 ORTHO05D004387 9.7e-213 743.8 532 70.7
TAR623G1097 Trochodendron aralioides HOM05D003665 ORTHO05D004387 3.5e-210 735.3 530 69.6
CSS0036787 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 2.2e-209 732.6 501 73.1
MD11G1136600 Malus domestica HOM05D003665 ORTHO05D004387 1.1e-208 730.3 505 71.9
Nn2g12882 Nelumbo nucifera HOM05D003665 ORTHO05D004387 1.9e-208 729.6 571 66.5
Glyma.13G325700 Glycine max HOM05D003665 ORTHO05D004387 7.2e-208 727.6 503 71.0
CSS0007464 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 5.2e-206 721.5 524 68.7
Gorai.009G107400 Gossypium raimondii HOM05D003665 ORTHO05D004387 5.2e-206 721.5 519 69.9
RcHm_v2.0_Chr5g0058821 Rosa chinensis HOM05D003665 ORTHO05D004387 5.2e-206 721.5 504 70.8
Duzib170G0108 Durio zibethinus HOM05D003665 ORTHO05D004387 6.7e-206 721.1 514 70.0
Gohir.D05G103100 Gossypium hirsutum HOM05D003665 ORTHO05D004387 6.7e-206 721.1 519 70.1
Ciclev10028088m.g Citrus clementina HOM05D003665 ORTHO05D004387 1.2e-205 720.3 585 64.8
Eucgr.B02502 Eucalyptus grandis HOM05D003665 ORTHO05D004387 1.2e-205 720.3 534 67.8
Sopen03g034790 Solanum pennellii HOM05D003665 ORTHO05D004387 2.0e-205 719.5 540 66.7
MSTRG.18661 Avicennia marina HOM05D003665 ORTHO05D004387 2.6e-205 719.2 544 67.6
Cc00_g12880 Coffea canephora HOM05D003665 ORTHO05D004387 2.6e-205 719.2 594 63.6
Solyc03g115810.3 Solanum lycopersicum HOM05D003665 ORTHO05D004387 2.6e-205 719.2 540 66.9
Phvul.005G134800 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 7.5e-205 717.6 501 70.1
GSVIVG01025191001 Vitis vinifera HOM05D003665 ORTHO05D004387 9.7e-205 717.2 599 63.4
Prupe.6G102100 Prunus persica HOM05D003665 ORTHO05D004387 1.3e-204 716.8 458 75.3
TWI31G1339 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 2.8e-204 715.7 595 63.4
CANSAT54G1114 Cannabis sativa HOM05D003665 ORTHO05D004387 3.7e-204 715.3 522 68.4
Cfa011312 Carpinus fangiana HOM05D003665 ORTHO05D004387 6.3e-204 714.5 504 70.8
CiPaw.13G113600 Carya illinoinensis HOM05D003665 ORTHO05D004387 1.4e-203 713.4 504 71.0
FAN25G3303 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.4e-203 713.4 504 69.8
Glyma.12G172200 Glycine max HOM05D003665 ORTHO05D004387 1.4e-203 713.4 499 70.9
Atru.chr3.3622 Acer truncatum HOM05D003665 ORTHO05D004387 1.8e-203 713.0 520 69.8
Gohir.A03G033500 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.8e-203 713.0 522 68.4
Gorai.003G141900 Gossypium raimondii HOM05D003665 ORTHO05D004387 2.4e-203 712.6 524 68.5
Gohir.D03G134800 Gossypium hirsutum HOM05D003665 ORTHO05D004387 3.1e-203 712.2 522 68.4
FvH4_3g32210 Fragaria vesca HOM05D003665 ORTHO05D004387 4.1e-203 711.8 504 69.8
Lj3g0004290 Lotus japonicus HOM05D003665 ORTHO05D004387 4.1e-203 711.8 537 67.8
MD03G1118200 Malus domestica HOM05D003665 ORTHO05D004387 4.1e-203 711.8 458 75.1
vmacro03198 Vaccinium macrocarpon HOM05D003665 ORTHO05D004387 4.1e-203 711.8 516 69.4
TAR369G0153 Trochodendron aralioides HOM05D003665 ORTHO05D004387 9.1e-203 710.7 458 75.1
Thecc.09G341400 Theobroma cacao HOM05D003665 ORTHO05D004387 1.2e-202 710.3 457 75.1
SGA_v2.0_scaffold97G29239 Striga asiatica HOM05D003665 ORTHO05D004387 1.6e-202 709.9 560 65.4
VMungo1080G0406 Vigna mungo HOM05D003665 ORTHO05D004387 5.9e-202 708.0 502 69.5
Hma1.2p1_0058F.1_g032480 Hydrangea macrophylla HOM05D003665 ORTHO05D004387 1.3e-201 706.8 458 74.7
Duzib168G1080 Durio zibethinus HOM05D003665 ORTHO05D004387 1.7e-201 706.4 457 74.6
FAN21G1776 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.7e-201 706.4 505 69.5
MELO3C004874.2 Cucumis melo HOM05D003665 ORTHO05D004387 2.2e-201 706.1 508 68.7
Gohir.A05G103400 Gossypium hirsutum HOM05D003665 ORTHO05D004387 2.2e-201 706.1 519 68.8
Manes.11G145800 Manihot esculenta HOM05D003665 ORTHO05D004387 2.2e-201 706.1 457 75.1
SGA_v2.0_scaffold61G21127 Striga asiatica HOM05D003665 ORTHO05D004387 2.2e-201 706.1 523 68.6
FAN11G0686 Fragaria x ananassa HOM05D003665 ORTHO05D004387 3.8e-201 705.3 516 68.4
Potri.004G211200 Populus trichocarpa HOM05D003665 ORTHO05D004387 5.0e-201 704.9 458 74.2
PSO339G3164 Papaver somniferum HOM05D003665 ORTHO05D004387 8.5e-201 704.1 517 68.7
Potri.009G014400 Populus trichocarpa HOM05D003665 ORTHO05D004387 8.5e-201 704.1 549 65.2
PGR119G2069 Punica granatum HOM05D003665 ORTHO05D004387 1.1e-200 703.7 458 73.8
Sed0022671 Sechium edule HOM05D003665 ORTHO05D004387 1.1e-200 703.7 594 61.6
PSO384G0045 Papaver somniferum HOM05D003665 ORTHO05D004387 1.5e-200 703.4 517 68.9
Phvul.011G079600 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 1.5e-200 703.4 505 68.7
Migut.D02227 Erythranthe guttata HOM05D003665 ORTHO05D004387 1.9e-200 703.0 525 67.4
SalBow3G4611 Salvia bowleyana HOM05D003665 ORTHO05D004387 1.9e-200 703.0 516 68.6
CiPaw.14G080900 Carya illinoinensis HOM05D003665 ORTHO05D004387 2.5e-200 702.6 503 70.0
QL01p022122 Quercus lobata HOM05D003665 ORTHO05D004387 7.2e-200 701.0 652 57.7
CsaV3_1G014040 Cucumis sativus L. HOM05D003665 ORTHO05D004387 1.6e-199 699.9 613 60.5
FAN16G1206 Fragaria x ananassa HOM05D003665 ORTHO05D004387 3.6e-199 698.7 518 68.3
Ca_19262_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 4.7e-199 698.4 457 74.6
THA.LOC104826364 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 6.1e-199 698.0 509 68.2
ClCG01G013730 Citrullus lanatus HOM05D003665 ORTHO05D004387 8.0e-199 697.6 623 60.2
Haze_23819 Corylus avellana HOM05D003665 ORTHO05D004387 1.0e-198 697.2 446 76.0
Medtr2g094470 Medicago truncatula HOM05D003665 ORTHO05D004387 5.2e-198 694.9 511 66.9
VMungo1127G1530 Vigna mungo HOM05D003665 ORTHO05D004387 6.8e-198 694.5 505 67.9
HanXRQChr01g0019371 Helianthus annuus HOM05D003665 ORTHO05D004387 8.8e-198 694.1 511 68.9
EL10Ac2g02422 Beta vulgaris HOM05D003665 ORTHO05D004387 1.2e-197 693.7 543 65.0
Lj3g0015527 Lotus japonicus HOM05D003665 ORTHO05D004387 2.0e-197 693.0 457 74.0
Medtr4g059000 Medicago truncatula HOM05D003665 ORTHO05D004387 2.6e-197 692.6 518 68.3
TPR.G11547 Trifolium pratense HOM05D003665 ORTHO05D004387 2.6e-197 692.6 501 67.9
Psat5g278960 Pisum sativum HOM05D003665 ORTHO05D004387 7.5e-197 691.0 577 62.4
THA.LOC104815747 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 9.8e-197 690.6 509 67.4
ECA248G0778 Erigeron canadensis HOM05D003665 ORTHO05D004387 2.8e-196 689.1 557 64.1
Lalb_Chr24g0394651 Lupinus albus HOM05D003665 ORTHO05D004387 2.8e-196 689.1 537 65.5
Cpa.g.sc216.2 Carica papaya HOM05D003665 ORTHO05D004387 8.3e-196 687.6 435 75.9
Gohir.A08G198200 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.4e-195 686.8 542 65.7
Peaxi162Scf00274g00347 Petunia axillaris HOM05D003665 ORTHO05D004387 7.0e-195 684.5 523 66.7
BcaC01g04965 Brassica carinata HOM05D003665 ORTHO05D004387 3.5e-194 682.2 576 61.6
ECA238G1380 Erigeron canadensis HOM05D003665 ORTHO05D004387 1.0e-193 680.6 570 62.8
Lalb_Chr19g0137231 Lupinus albus HOM05D003665 ORTHO05D004387 3.8e-193 678.7 454 72.0
Sp4g11190 Schrenkiella parvula HOM05D003665 ORTHO05D004387 3.8e-193 678.7 597 58.0
Lalb_Chr22g0350251 Lupinus albus HOM05D003665 ORTHO05D004387 6.6e-193 677.9 515 67.6
Thhalv10016386m.g Eutrema salsugineum HOM05D003665 ORTHO05D004387 8.6e-193 677.6 536 63.4
Nitab4.5_0001997g0130 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.1e-192 677.2 455 72.3
AL4G21640 Arabidopsis lyrata HOM05D003665 ORTHO05D004387 1.5e-192 676.8 595 57.8
HanXRQChr14g0452781 Helianthus annuus HOM05D003665 ORTHO05D004387 1.5e-192 676.8 456 71.3
Gorai.004G229200 Gossypium raimondii HOM05D003665 ORTHO05D004387 1.9e-192 676.4 535 65.4
BolC3t15507H Brassica oleracea HOM05D003665 ORTHO05D004387 1.2e-191 673.7 587 60.5
CARHR121340 Cardamine hirsuta HOM05D003665 ORTHO05D004387 1.2e-191 673.7 588 58.8
BraA03t11853Z Brassica rapa HOM05D003665 ORTHO05D004387 1.6e-191 673.3 591 60.1
C03p31650 Brassica napus HOM05D003665 ORTHO05D004387 4.7e-191 671.8 586 59.9
Sabra09G0007600 Salix brachista HOM05D003665 ORTHO05D004387 4.7e-191 671.8 631 58.2
A07p18960 Brassica napus HOM05D003665 ORTHO05D004387 6.1e-191 671.4 499 66.1
arahy.Tifrunner.gnm1.ann1.567MYZ Arachis hypogaea HOM05D003665 ORTHO05D004387 8.0e-191 671.0 456 72.8
BcaB01g03101 Brassica carinata HOM05D003665 ORTHO05D004387 1.8e-190 669.8 591 59.4
Lsat_1_v5_gn_1_64201 Lactuca sativa HOM05D003665 ORTHO05D004387 1.8e-190 669.8 582 60.5
Actinidia24103 Actinidia chinensis HOM05D003665 ORTHO05D004387 2.3e-190 669.5 427 76.3
AT2G28390 Arabidopsis thaliana HOM05D003665 ORTHO05D004387 5.2e-190 668.3 600 58.2
Carub.0004s0931 Capsella rubella HOM05D003665 ORTHO05D004387 8.9e-190 667.5 596 57.9
A03p26380 Brassica napus HOM05D003665 ORTHO05D004387 1.2e-189 667.2 591 59.6
SEGI_12034 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 2.6e-189 666.0 505 65.7
TWI79G0002 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 7.5e-189 664.5 435 73.3
BcaB06g25420 Brassica carinata HOM05D003665 ORTHO05D004387 1.7e-188 663.3 564 60.8
Lsat_1_v5_gn_2_100120 Lactuca sativa HOM05D003665 ORTHO05D004387 1.7e-188 663.3 570 59.8
ATR0033G036 Amborella trichopoda HOM05D003665 ORTHO05D004387 2.2e-188 662.9 494 68.6
BraA07t29601Z Brassica rapa HOM05D003665 ORTHO05D004387 1.4e-187 660.2 499 65.3
Aa31LG5G7830 Aethionema arabicum HOM05D003665 ORTHO05D004387 1.8e-187 659.8 632 56.6
C04p23090 Brassica napus HOM05D003665 ORTHO05D004387 2.4e-187 659.4 587 59.1
BolC4t23802H Brassica oleracea HOM05D003665 ORTHO05D004387 5.4e-187 658.3 588 58.8
Aqoxy4G03025 Aquilegia oxysepala HOM05D003665 ORTHO05D004387 1.2e-186 657.1 531 65.0
arahy.Tifrunner.gnm1.ann1.RTB9TW Arachis hypogaea HOM05D003665 ORTHO05D004387 1.0e-185 654.1 516 63.6
Dinv32740 Davidia involucrata HOM05D003665 ORTHO05D004387 1.0e-185 654.1 597 59.6
arahy.Tifrunner.gnm1.ann1.IYQC31 Arachis hypogaea HOM05D003665 ORTHO05D004387 1.3e-185 653.7 518 63.3
Nitab4.5_0001195g0040 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.6e-183 646.7 455 69.7
Oeu030188.3 Olea europaea HOM05D003665 ORTHO05D004387 1.6e-183 646.7 640 54.2
COL.COLO4_18330 Corchorus olitorius HOM05D003665 ORTHO05D004387 2.1e-183 646.4 448 71.0
Dinv09884 Davidia involucrata HOM05D003665 ORTHO05D004387 1.0e-182 644.0 491 67.8
arahy.Tifrunner.gnm1.ann1.B5LWM3 Arachis hypogaea HOM05D003665 ORTHO05D004387 3.2e-179 632.5 456 69.7
SEGI_16973 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 1.4e-174 617.1 449 66.8
Actinidia07137 Actinidia chinensis HOM05D003665 ORTHO05D004387 3.1e-174 615.9 396 76.5
Sc06g0010260 Simmondsia chinensis HOM05D003665 ORTHO05D004387 3.7e-172 609.0 399 73.4
HPP92_006598 Vanilla planifolia HOM05D003665 ORTHO05D004387 1.9e-171 606.7 579 57.0
Psat0s134g0040 Pisum sativum HOM05D003665 ORTHO05D004387 5.4e-171 605.1 463 67.4
PGR102G1414 Punica granatum HOM05D003665 ORTHO05D004387 8.6e-169 597.8 509 61.7
Ca_01409_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 3.1e-166 589.3 412 71.4
DCAR_006064 Daucus carota HOM05D003665 ORTHO05D004387 2.9e-164 582.8 575 57.4
Zm00001eb139700 Zea mays HOM05D003665 ORTHO05D004387 6.4e-164 581.6 325 88.0
Mapoly0115s0070 Marchantia polymorpha HOM05D003665 ORTHO05D004387 1.4e-163 580.5 554 56.3
Hund03712 Selenicereus undatus HOM05D003665 ORTHO05D004387 2.4e-163 579.7 379 72.8
SMO356G0046 Selaginella moellendorffii HOM05D003665 ORTHO05D004387 8.4e-156 554.7 453 58.7
Ah.12g061180 Amaranthus hybridus HOM05D003665 ORTHO05D004387 2.7e-154 549.7 434 63.8
Gohir.D08G215600 Gossypium hirsutum HOM05D003665 ORTHO05D004387 2.3e-153 546.6 457 64.1
Pp3c3_30360 Physcomitrium patens HOM05D003665 ORTHO05D004387 8.7e-153 544.7 522 56.3
AagrBONN_evm.TU.Sc2ySwM_117.1231 Anthoceros agrestis HOM05D003665 ORTHO05D004387 1.4e-147 527.3 489 55.0
Nitab4.5_0001211g0250 Nicotiana tabacum HOM05D003665 ORTHO05D004387 6.6e-145 518.5 608 49.0
AUR62037705 Chenopodium quinoa HOM05D003665 ORTHO05D004387 2.5e-144 516.5 483 56.9
AagrBONN_evm.TU.Sc2ySwM_228.3586 Anthoceros agrestis HOM05D003665 ORTHO05D004387 1.1e-142 511.1 535 54.0
AUR62020295 Chenopodium quinoa HOM05D003665 ORTHO05D004387 2.2e-140 503.4 453 58.5
Nitab4.5_0005900g0050 Nicotiana tabacum HOM05D003665 ORTHO05D004387 6.2e-135 485.3 582 49.1
unitig_899.g14918 Utricularia gibba HOM05D003665 ORTHO05D004387 1.4e-134 484.2 561 49.4
Actinidia12926 Actinidia chinensis HOM05D003665 ORTHO05D004387 4.0e-134 482.6 342 70.2
Pp3c10_13820 Physcomitrium patens HOM05D003665 ORTHO05D004387 4.9e-132 475.7 517 52.4
Actinidia13994 Actinidia chinensis HOM05D003665 ORTHO05D004387 1.2e-130 471.1 331 69.8
Lj2C1027G11 Lonicera japonica HOM05D003665 ORTHO05D004387 1.2e-130 471.1 599 48.4
Sabra04G0142700 Salix brachista HOM05D003665 ORTHO05D004387 1.3e-127 461.1 377 62.3
CDE08G0353 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 2.1e-122 443.7 312 69.9
Peaxi162Scf00106g00431 Petunia axillaris HOM05D003665 ORTHO05D004387 3.3e-120 436.4 405 58.8
PGSC0003DMG400019504 Solanum tuberosum HOM05D003665 ORTHO05D004387 3.3e-112 409.8 306 69.0
CAN.G479.67 Capsicum annuum HOM05D003665 ORTHO05D004387 3.1e-94 350.1 264 67.4
BcaB06g25423 Brassica carinata HOM05D003665 ORTHO05D004387 7.0e-86 322.4 335 55.2
Atru.chr3.3619 Acer truncatum HOM05D003665 ORTHO05D004387 7.7e-85 318.9 249 63.5
CDE02G0373 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 4.7e-74 283.1 218 63.8
CBR_g29308 Chara braunii HOM05D000019 ORTHO05D000002 3.0e-73 280.4 212 63.2
CDE08G1291 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 6.1e-66 256.1 206 63.1
Lsat_1_v5_gn_8_29480 Lactuca sativa HOM05D003665 ORTHO05D004387 3.0e-60 237.3 163 69.3
Cre03.g154500 Chlamydomonas reinhardtii HOM05D003665 ORTHO05D004387 3.5e-53 213.8 437 33.6
CDE02G1163 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 7.3e-51 206.1 214 53.3
MCO05G084 Micromonas commoda HOM05D003665 ORTHO05D004387 8.1e-50 202.6 639 24.9
Lsat_1_v5_gn_6_45780 Lactuca sativa HOM05D003665 ORTHO05D004387 9.9e-48 195.7 133 69.9
Cfa025752 Carpinus fangiana HOM05D003665 ORTHO05D004387 1.3e-47 195.3 442 31.4
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 2.9e-47 194.1 139 66.9
Actinidia13995 Actinidia chinensis HOM05D003665 ORTHO05D004387 1.9e-46 191.4 105 85.7
SHI09320 Sapria himalayana HOM05D003665 ORTHO05D004387 4.1e-46 190.3 186 52.7
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 7.8e-45 186.0 132 66.7
Lsat_1_v5_gn_6_39960 Lactuca sativa HOM05D003665 ORTHO05D004387 7.3e-43 179.5 123 69.9
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 7.6e-40 169.5 152 58.6
TPR.G35439 Trifolium pratense HOM05D003665 ORTHO05D004387 1.6e-37 161.8 146 60.3
Duzib235G1059 Durio zibethinus HOM05D003665 ORTHO05D004387 1.0e-36 159.1 152 56.6
arahy.Tifrunner.gnm1.ann1.3H693L Arachis hypogaea HOM05D003665 ORTHO05D004387 3.4e-32 144.1 126 60.3
SHI09317 Sapria himalayana HOM05D003665 ORTHO05D004387 1.5e-27 128.6 78 78.2
Duzib084G1104 Durio zibethinus HOM05D003665 ORTHO05D004387 9.0e-25 119.4 73 76.7
Ca_23093_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 8.4e-23 112.8 65 81.5
TPR.G15544 Trifolium pratense HOM05D003665 ORTHO05D004387 1.9e-22 111.7 63 74.6
VMungo1074G0001 Vigna mungo HOM05D003665 ORTHO05D004387 7.1e-22 109.8 115 53.0
VMungo0225G0001 Vigna mungo HOM05D003665 ORTHO05D004387 9.3e-22 109.4 68 76.5
SHI09316 Sapria himalayana HOM05D003665 ORTHO05D004387 6.7e-20 103.2 70 65.7
Glyma.11G146000 Glycine max HOM05D003665 ORTHO05D004387 5.6e-19 100.1 109 54.1
SHI09315 Sapria himalayana HOM05D003665 ORTHO05D004387 1.6e-18 98.6 60 76.7
BolC4t27275H Brassica oleracea HOM05D003665 ORTHO05D004387 5.1e-12 77.0 125 42.4
Lalb_Chr22g0350671 Lupinus albus HOM05D003665 ORTHO05D004387 6.2e-10 70.1 42 81.0
HanXRQChr06g0179151 Helianthus annuus HOM05D003665 ORTHO05D004387 3.4e-08 64.3 36 77.8
BraA04t17717Z Brassica rapa HOM05D003665 ORTHO05D040370 1.0e-07 62.8 64 48.4
C04p57550 Brassica napus HOM05D003665 ORTHO05D040370 3.2e-06 57.8 41 53.7
HanXRQChr04g0103101 Helianthus annuus HOM05D003665 ORTHO05D004387 5.5e-06 57.0 32 75.0


User provided reference genes

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