Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 1.8e-151 539.3 285 100.0
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 9.5e-108 394.0 287 76.3
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 1.2e-105 387.1 269 73.2
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 2.8e-99 365.9 273 68.1
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 8.0e-99 364.4 278 67.3
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 1.8e-98 363.2 275 67.6
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 1.8e-98 363.2 269 68.4
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.8e-98 363.2 267 70.0
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 1.8e-98 363.2 273 67.8
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.1e-98 362.5 269 68.4
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.1e-98 362.5 269 68.4
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 3.1e-98 362.5 274 68.2
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 1.2e-97 360.5 279 67.4
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.5e-97 360.1 277 69.3
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 2.0e-97 359.8 268 67.9
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 2.6e-97 359.4 269 68.8
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 3.4e-97 359.0 268 67.2
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 5.8e-97 358.2 271 67.5
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 7.5e-97 357.8 269 68.4
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 9.8e-97 357.5 275 66.5
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.7e-96 356.7 269 67.3
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 1.7e-96 356.7 276 68.1
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.7e-96 356.7 269 69.1
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 1.7e-96 356.7 275 66.5
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 2.2e-96 356.3 271 67.2
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 2.2e-96 356.3 268 67.9
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 2.9e-96 355.9 279 67.0
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 3.7e-96 355.5 267 68.9
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 3.7e-96 355.5 275 67.6
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 3.7e-96 355.5 267 70.0
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 3.7e-96 355.5 267 70.0
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 4.9e-96 355.1 276 67.4
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 4.9e-96 355.1 266 67.3
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 6.4e-96 354.8 280 65.7
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 8.3e-96 354.4 276 67.4
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 8.3e-96 354.4 268 66.4
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 8.3e-96 354.4 279 66.3
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 8.3e-96 354.4 273 67.0
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 8.3e-96 354.4 273 70.0
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 8.3e-96 354.4 269 67.3
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 8.3e-96 354.4 268 66.0
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 1.1e-95 354.0 269 67.7
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 1.1e-95 354.0 270 68.1
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 1.1e-95 354.0 267 67.8
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 1.1e-95 354.0 264 68.9
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 1.1e-95 354.0 269 67.7
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 1.4e-95 353.6 274 68.2
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 1.4e-95 353.6 269 67.3
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 1.9e-95 353.2 269 67.7
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 2.4e-95 352.8 283 65.7
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 2.4e-95 352.8 269 67.7
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 2.4e-95 352.8 269 68.4
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 3.2e-95 352.4 276 67.0
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 3.2e-95 352.4 285 66.3
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 4.1e-95 352.1 264 68.9
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 5.4e-95 351.7 269 68.0
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 5.4e-95 351.7 273 69.6
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 5.4e-95 351.7 279 64.9
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 7.0e-95 351.3 285 66.3
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 7.0e-95 351.3 280 66.4
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 9.2e-95 350.9 279 67.0
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 9.2e-95 350.9 279 67.0
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 9.2e-95 350.9 280 65.4
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 1.2e-94 350.5 279 67.4
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 1.2e-94 350.5 268 65.3
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 1.6e-94 350.1 271 67.5
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 1.6e-94 350.1 269 66.2
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 1.6e-94 350.1 278 64.0
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 2.7e-94 349.4 269 66.9
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 2.7e-94 349.4 269 66.9
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 2.7e-94 349.4 269 66.9
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 2.7e-94 349.4 271 66.8
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 2.7e-94 349.4 275 66.5
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 3.5e-94 349.0 271 66.8
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 3.5e-94 349.0 271 66.8
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 3.5e-94 349.0 271 66.8
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 3.5e-94 349.0 271 66.8
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 3.5e-94 349.0 275 65.5
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 3.5e-94 349.0 264 68.2
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 4.6e-94 348.6 271 66.8
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 6.0e-94 348.2 271 67.2
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 7.8e-94 347.8 269 66.5
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 7.8e-94 347.8 290 65.9
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 1.0e-93 347.4 277 66.1
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 1.3e-93 347.1 271 68.3
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 1.7e-93 346.7 305 61.0
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 3.0e-93 345.9 269 67.3
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 5.0e-93 345.1 279 65.9
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 6.6e-93 344.7 275 65.5
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 6.6e-93 344.7 282 65.6
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 1.1e-92 344.0 279 65.2
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 1.9e-92 343.2 275 64.0
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 4.3e-92 342.0 269 65.8
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 5.6e-92 341.7 276 66.3
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 7.3e-92 341.3 273 65.6
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 9.5e-92 340.9 279 65.6
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 4.7e-91 338.6 279 64.9
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 4.7e-91 338.6 278 66.9
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 1.1e-90 337.4 280 63.2
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 3.1e-90 335.9 267 64.8
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 5.2e-90 335.1 270 65.9
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 3.4e-89 332.4 266 64.3
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 4.4e-89 332.0 284 64.4
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 5.8e-89 331.6 286 61.9
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 5.8e-89 331.6 284 64.1
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 2.9e-88 329.3 267 66.3
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 8.3e-88 327.8 256 67.6
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 3.2e-87 325.9 311 57.6
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 1.6e-86 323.6 266 64.3
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 2.1e-86 323.2 279 63.4
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.0e-85 320.9 293 60.8
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 2.3e-85 319.7 257 66.1
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 7.3e-84 314.7 342 53.8
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 8.1e-83 311.2 329 55.9
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 3.1e-82 309.3 267 58.1
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 1.5e-81 307.0 378 49.7
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 4.4e-81 305.4 267 58.1
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 8.1e-75 284.6 264 56.1
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 4.0e-74 282.3 264 55.3
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 9.0e-74 281.2 266 56.0
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 7.6e-73 278.1 264 55.3
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 4.9e-72 275.4 223 63.2
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 3.5e-70 269.2 263 52.9
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 1.1e-68 264.2 290 51.0
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 1.9e-68 263.5 273 51.6
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 3.6e-67 259.2 497 38.2
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 8.1e-67 258.1 249 56.6
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 8.1e-67 258.1 497 38.2
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 1.1e-63 247.7 249 55.0
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 2.1e-62 243.4 276 51.1
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 4.6e-62 242.3 252 54.8
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 1.8e-61 240.4 276 50.4
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 1.8e-61 240.4 253 54.5
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 3.9e-61 239.2 199 65.3
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 6.7e-61 238.4 276 50.7
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 3.3e-60 236.1 276 50.0
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 2.8e-59 233.0 276 49.6
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 1.2e-54 217.6 220 54.1
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 1.0e-53 214.5 267 47.6
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 3.0e-53 213.0 251 51.0
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 2.5e-52 209.9 308 46.8
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 5.3e-50 202.2 250 48.0
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 1.5e-49 200.7 147 67.3
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 5.8e-49 198.7 275 45.5
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 7.9e-46 188.3 130 74.6
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 2.3e-45 186.8 131 74.0
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.3e-43 181.0 148 64.2
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.4e-42 177.6 267 42.7
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 6.9e-42 175.3 423 32.2
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 1.0e-40 171.4 267 41.6
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 1.1e-39 167.9 245 42.4
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 1.2e-38 164.5 138 60.1
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 4.6e-38 162.5 136 64.0
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.3e-37 160.2 131 64.9
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 1.3e-35 154.5 229 43.7
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.7e-35 152.9 101 78.2
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.4e-34 151.0 96 81.2
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 5.3e-34 149.1 162 54.3
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 2.1e-30 137.1 265 34.0
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 4.1e-26 122.9 118 57.6
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 4.5e-25 119.4 273 30.0
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 7.2e-23 112.1 291 29.6
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 3.0e-21 106.7 177 43.5
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 2.6e-20 103.6 131 48.1
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 9.7e-20 101.7 73 75.3
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 4.5e-17 92.8 69 63.8
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 3.2e-15 86.7 52 84.6
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 4.2e-15 86.3 52 82.7
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 4.2e-15 86.3 52 82.7
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 4.2e-15 86.3 52 82.7
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 9.4e-15 85.1 52 82.7
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 9.4e-15 85.1 59 74.6
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 1.0e-13 81.6 72 61.1
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 1.8e-13 80.9 50 80.0
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 4.0e-13 79.7 113 42.5
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 3.1e-10 70.1 53 60.4
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 6.5e-08 62.4 60 53.3
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 6.5e-08 62.4 60 53.3
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.5e-07 61.2 60 53.3
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 2.5e-07 60.5 60 51.7
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 4.2e-07 59.7 77 40.3
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 5.5e-07 59.3 40 72.5
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.2e-06 58.2 57 52.6


User provided reference genes

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