Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0939400 Oryza sativa ssp. japonica HOM05D007065 ORTHO05D008960 6.2e-59 231.1 165 100.0
Zm00001eb141670 Zea mays HOM05D007065 ORTHO05D008960 1.2e-25 120.6 168 63.7
MBI13_g15309_MAGBIO Magnolia biondii HOM05D007065 ORTHO05D008960 1.2e-14 84.0 106 50.9
PSO339G2565 Papaver somniferum HOM05D007065 ORTHO05D008960 8.7e-13 77.8 105 47.6
Nn2g15140 Nelumbo nucifera HOM05D007065 ORTHO05D008960 5.6e-12 75.1 107 46.7
Cc02_g30050 Coffea canephora HOM05D007065 ORTHO05D008960 7.4e-12 74.7 103 47.6
PSO384G3763 Papaver somniferum HOM05D007065 ORTHO05D008960 7.4e-12 74.7 105 46.7
Aqoxy1G00221 Aquilegia oxysepala HOM05D007065 ORTHO05D008960 9.6e-12 74.3 95 48.4
ATR1134G106 Amborella trichopoda HOM05D007065 ORTHO05D008960 1.3e-11 73.9 98 48.0
Sc10g0004180 Simmondsia chinensis HOM05D007065 ORTHO05D008960 1.6e-11 73.6 104 48.1
Dinv05022 Davidia involucrata HOM05D007065 ORTHO05D008960 2.1e-11 73.2 102 46.1
QL04p012215 Quercus lobata HOM05D007065 ORTHO05D008960 2.8e-11 72.8 103 46.6
Psat5g211000 Pisum sativum HOM05D007065 ORTHO05D008960 6.2e-11 71.6 98 44.9
Hund13309 Selenicereus undatus HOM05D007065 ORTHO05D008960 6.2e-11 71.6 100 46.0
Ca_14187_v3 Cicer arietinum L. HOM05D007065 ORTHO05D008960 8.1e-11 71.2 182 34.6
FvH4_7g02000 Fragaria vesca HOM05D007065 ORTHO05D008960 8.1e-11 71.2 100 50.0
FAN01G0916 Fragaria x ananassa HOM05D007065 ORTHO05D008960 8.1e-11 71.2 100 50.0
FAN06G0835 Fragaria x ananassa HOM05D007065 ORTHO05D008960 8.1e-11 71.2 100 50.0
Medtr3g436080 Medicago truncatula HOM05D007065 ORTHO05D008960 1.1e-10 70.9 95 45.3
RcHm_v2.0_Chr1g0318991 Rosa chinensis HOM05D007065 ORTHO05D008960 1.4e-10 70.5 98 48.0
CiPaw.13G009300 Carya illinoinensis HOM05D007065 ORTHO05D008960 1.8e-10 70.1 105 45.7
Nitab4.5_0016351g0020 Nicotiana tabacum HOM05D007065 ORTHO05D008960 1.8e-10 70.1 101 43.6
HPP92_001654 Vanilla planifolia HOM05D007065 ORTHO05D008960 1.8e-10 70.1 104 44.2
CsaV3_5G024860 Cucumis sativus L. HOM05D007065 ORTHO05D008960 2.4e-10 69.7 94 47.9
Glyma.11G157140 Glycine max HOM05D007065 ORTHO05D008960 2.4e-10 69.7 89 47.2
Nitab4.5_0000316g0330 Nicotiana tabacum HOM05D007065 ORTHO05D008960 3.1e-10 69.3 101 43.6
GSVIVG01001464001 Vitis vinifera HOM05D007065 ORTHO05D008960 3.1e-10 69.3 104 43.3
AUR62037250 Chenopodium quinoa HOM05D007065 ORTHO05D008960 9.0e-10 67.8 102 42.2
Peaxi162Scf01115g00011 Petunia axillaris HOM05D007065 ORTHO05D008960 9.0e-10 67.8 102 42.2
SGA_v2.0_scaffold4G02459 Striga asiatica HOM05D007065 ORTHO05D008960 9.0e-10 67.8 181 33.7
THA.LOC104819111 Tarenaya hassleriana HOM05D007065 ORTHO05D008960 9.0e-10 67.8 104 40.4
unitig_22.g5430 Utricularia gibba HOM05D007065 ORTHO05D008960 9.0e-10 67.8 104 40.4
MSTRG.20552 Avicennia marina HOM05D007065 ORTHO05D008960 1.2e-09 67.4 100 41.0
MD07G1026200 Malus domestica HOM05D007065 ORTHO05D008960 1.2e-09 67.4 103 43.7
Phvul.005G034300 Phaseolus vulgaris HOM05D007065 ORTHO05D008960 1.2e-09 67.4 90 45.6
ClCG01G007790 Citrullus lanatus HOM05D007065 ORTHO05D008960 1.5e-09 67.0 98 41.8
HanXRQChr01g0020971 Helianthus annuus HOM05D007065 ORTHO05D008960 1.5e-09 67.0 95 44.2
MELO3C005114.2 Cucumis melo HOM05D007065 ORTHO05D008960 2.0e-09 66.6 102 42.2
AUR62030541 Chenopodium quinoa HOM05D007065 ORTHO05D008960 2.6e-09 66.2 102 41.2
Aa31LG11G7640 Aethionema arabicum HOM05D007065 ORTHO05D008960 3.4e-09 65.9 96 40.6
Lalb_Chr04g0263741 Lupinus albus HOM05D007065 ORTHO05D008960 3.4e-09 65.9 106 39.6
MSTRG.17000 Avicennia marina HOM05D007065 ORTHO05D008960 4.5e-09 65.5 97 41.2
Carub.0006s1163 Capsella rubella HOM05D007065 ORTHO05D008960 4.5e-09 65.5 97 45.4
MD02G1298000 Malus domestica HOM05D007065 ORTHO05D008960 4.5e-09 65.5 103 43.7
Mapoly0014s0118 Marchantia polymorpha HOM05D007065 ORTHO05D008960 4.5e-09 65.5 97 44.3
Sp6g30550 Schrenkiella parvula HOM05D007065 ORTHO05D008960 4.5e-09 65.5 97 46.4
FAN28G1096 Fragaria x ananassa HOM05D007065 ORTHO05D008960 5.8e-09 65.1 63 58.7
Peaxi162Scf01115g00110 Petunia axillaris HOM05D007065 ORTHO05D008960 5.8e-09 65.1 102 41.2
Pp3c19_1440 Physcomitrium patens HOM05D007065 ORTHO05D008960 5.8e-09 65.1 87 47.1
Lsat_1_v5_gn_1_99921 Lactuca sativa HOM05D007065 ORTHO05D008960 7.6e-09 64.7 95 43.2
Solyc01g088140.3 Solanum lycopersicum HOM05D007065 ORTHO05D008960 7.6e-09 64.7 94 41.5
Thecc.10G002700 Theobroma cacao HOM05D007065 ORTHO05D008960 1.7e-08 63.5 102 42.2
Actinidia19434 Actinidia chinensis HOM05D007065 ORTHO05D008960 2.2e-08 63.2 82 48.8
A10p24790 Brassica napus HOM05D007065 ORTHO05D008960 2.2e-08 63.2 95 45.3
C09p63610 Brassica napus HOM05D007065 ORTHO05D008960 2.2e-08 63.2 95 45.3
BolC9t59205H Brassica oleracea HOM05D007065 ORTHO05D008960 2.2e-08 63.2 95 45.3
AagrBONN_evm.TU.Sc2ySwM_228.825 Anthoceros agrestis HOM05D007065 ORTHO05D008960 3.8e-08 62.4 163 35.6
Duzib128G1478 Durio zibethinus HOM05D007065 ORTHO05D008960 3.8e-08 62.4 179 34.6
Sed0022285 Sechium edule HOM05D007065 ORTHO05D008960 3.8e-08 62.4 98 40.8
BraA10t44543Z Brassica rapa HOM05D007065 ORTHO05D008960 4.9e-08 62.0 95 45.3
Rhsim07G0061200 Rhododendron simsii HOM05D007065 ORTHO05D008960 4.9e-08 62.0 87 44.8
Sopen01g035020 Solanum pennellii HOM05D007065 ORTHO05D008960 4.9e-08 62.0 170 31.8
Actinidia06280 Actinidia chinensis HOM05D007065 ORTHO05D008960 6.5e-08 61.6 106 43.4
AL6G24090 Arabidopsis lyrata HOM05D007065 ORTHO05D008960 6.5e-08 61.6 97 43.3
AT5G13470 Arabidopsis thaliana HOM05D007065 ORTHO05D008960 6.5e-08 61.6 97 43.3
Manes.04G064100 Manihot esculenta HOM05D007065 ORTHO05D008960 6.5e-08 61.6 106 43.4
C02p06180 Brassica napus HOM05D007065 ORTHO05D008960 1.1e-07 60.8 169 36.1
BolC2t06559H Brassica oleracea HOM05D007065 ORTHO05D008960 1.1e-07 60.8 169 36.1
Potri.003G203900 Populus trichocarpa HOM05D007065 ORTHO05D008960 1.1e-07 60.8 102 43.1
BcaNung01886 Brassica carinata HOM05D007065 ORTHO05D002715 1.4e-07 60.5 93 45.2
COL.COLO4_19334 Corchorus olitorius HOM05D002616 ORTHO05D003192 1.4e-07 60.5 98 41.8
Eucgr.G03272 Eucalyptus grandis HOM05D007065 ORTHO05D008960 1.4e-07 60.5 184 32.6
Lj3g0026300 Lotus japonicus HOM05D007065 ORTHO05D008960 1.4e-07 60.5 95 40.0
BcaNung01150 Brassica carinata HOM05D007065 ORTHO05D008960 2.5e-07 59.7 169 35.5
A02p01960 Brassica napus HOM05D007065 ORTHO05D008960 2.5e-07 59.7 169 35.5
BraA02t05169Z Brassica rapa HOM05D007065 ORTHO05D008960 3.2e-07 59.3 169 35.5
TWI09G1481 Tripterygium wilfordii HOM05D007065 ORTHO05D008960 3.2e-07 59.3 95 45.3
EL10Ac2g02888 Beta vulgaris HOM05D007065 ORTHO05D008960 4.2e-07 58.9 101 44.6
SalBow5G0133 Salvia bowleyana HOM05D007065 ORTHO05D008960 4.2e-07 58.9 90 42.2
ECA248G1453 Erigeron canadensis HOM05D007065 ORTHO05D008960 5.5e-07 58.5 171 33.9
Gohir.D13G013700 Gossypium hirsutum HOM05D007065 ORTHO05D008960 5.5e-07 58.5 95 42.1
SalBow5G3075 Salvia bowleyana HOM05D007065 ORTHO05D008960 1.2e-06 57.4 88 42.0
CANSAT80G2361 Cannabis sativa HOM05D007065 ORTHO05D008960 2.7e-06 56.2 62 51.6
Migut.B01254 Erythranthe guttata HOM05D007065 ORTHO05D008960 2.7e-06 56.2 176 30.7
PGR031G2384 Punica granatum HOM05D007065 ORTHO05D008960 2.7e-06 56.2 106 37.7
Oeu027356.1 Olea europaea HOM05D007065 ORTHO05D008960 3.5e-06 55.8 97 39.2
Sabra01G0015300 Salix brachista HOM05D007065 ORTHO05D008960 3.5e-06 55.8 104 40.4
Duzib114G0680 Durio zibethinus HOM05D007065 ORTHO05D008960 6.0e-06 55.1 103 37.9
Thecc.03G067800 Theobroma cacao HOM05D007065 ORTHO05D008960 6.0e-06 55.1 74 43.2


User provided reference genes

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