Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0930000 Oryza sativa ssp. japonica HOM05D007375 ORTHO05D009293 3.8e-68 261.5 146 100.0
Zm00001eb370040 Zea mays HOM05D007375 ORTHO05D009293 2.7e-42 175.6 154 66.2
Sc21g0006670 Simmondsia chinensis HOM05D007375 ORTHO05D009293 3.0e-33 145.6 85 74.1
ECA233G1923 Erigeron canadensis HOM05D000870 ORTHO05D000715 4.8e-31 138.3 91 71.4
Atru.chr3.3047 Acer truncatum HOM05D007375 ORTHO05D009293 2.4e-30 136.0 85 74.1
Atru.chr3.3056 Acer truncatum HOM05D007375 ORTHO05D009293 2.4e-30 136.0 85 74.1
Hma1.2p1_1811F.1_g303540 Hydrangea macrophylla HOM05D007375 ORTHO05D009293 5.3e-30 134.8 76 75.0
HanXRQChr13g0404191 Helianthus annuus HOM05D007375 ORTHO05D009293 6.9e-30 134.4 84 73.8
CSS0023504 Camellia sinensis var. sinensis HOM05D007375 ORTHO05D009293 1.5e-29 133.3 84 73.8
EL10Ac7g16260 Beta vulgaris HOM05D007375 ORTHO05D009293 1.0e-28 130.6 85 68.2
AUR62020198 Chenopodium quinoa HOM05D007375 ORTHO05D009293 2.2e-28 129.4 91 63.7
SEGI_05685 Sequoiadendron giganteum HOM05D007375 ORTHO05D009293 2.2e-28 129.4 87 69.0
Lsat_1_v5_gn_6_49101 Lactuca sativa HOM05D007375 ORTHO05D009293 3.8e-28 128.6 82 72.0
Rhsim01G0198300 Rhododendron simsii HOM05D007375 ORTHO05D009293 3.8e-28 128.6 134 53.7
Potri.009G155700 Populus trichocarpa HOM05D007375 ORTHO05D009293 5.0e-28 128.3 84 71.4
Sabra09G0122000 Salix brachista HOM05D007375 ORTHO05D009293 5.0e-28 128.3 84 71.4
Cc01_g08020 Coffea canephora HOM05D007375 ORTHO05D009293 1.4e-27 126.7 84 67.9
Thecc.09G269700 Theobroma cacao HOM05D007375 ORTHO05D009293 1.4e-27 126.7 85 68.2
AagrBONN_evm.TU.Sc2ySwM_362.1659 Anthoceros agrestis HOM05D007375 ORTHO05D009293 2.5e-27 125.9 84 66.7
Lj2E833T0 Lonicera japonica HOM05D007375 ORTHO05D009293 5.5e-27 124.8 84 67.9
MD11G1177000 Malus domestica HOM05D007375 ORTHO05D009293 5.5e-27 124.8 85 67.1
Nn6g33246 Nelumbo nucifera HOM05D007375 ORTHO05D009293 5.5e-27 124.8 85 68.2
Manes.04G063400 Manihot esculenta HOM05D007375 ORTHO05D009293 9.4e-27 124.0 157 50.3
TAR623G0701 Trochodendron aralioides HOM05D007375 ORTHO05D009293 9.4e-27 124.0 85 67.1
FAN21G2595 Fragaria x ananassa HOM05D007375 ORTHO05D009293 1.6e-26 123.2 84 66.7
MSTRG.18802 Avicennia marina HOM05D007375 ORTHO05D009293 2.1e-26 122.9 82 67.1
RcHm_v2.0_Chr5g0049271 Rosa chinensis HOM05D007375 ORTHO05D009293 2.1e-26 122.9 84 66.7
PSO339G5659 Papaver somniferum HOM05D007375 ORTHO05D009293 3.6e-26 122.1 85 65.9
PSO384G3190 Papaver somniferum HOM05D007375 ORTHO05D009293 3.6e-26 122.1 85 65.9
GSVIVG01037526001 Vitis vinifera HOM05D007375 ORTHO05D009293 3.6e-26 122.1 85 64.7
ATR0697G291 Amborella trichopoda HOM05D007375 ORTHO05D009293 4.7e-26 121.7 85 64.7
Duzib170G0509 Durio zibethinus HOM05D007375 ORTHO05D009293 6.1e-26 121.3 85 64.7
FvH4_3g26920 Fragaria vesca HOM05D007375 ORTHO05D009293 6.1e-26 121.3 84 65.5
QL01p018876 Quercus lobata HOM05D007375 ORTHO05D009293 6.1e-26 121.3 93 62.4
Duzib168G1424 Durio zibethinus HOM05D007375 ORTHO05D009293 7.9e-26 120.9 85 64.7
Migut.N02430 Erythranthe guttata HOM05D007375 ORTHO05D009293 1.0e-25 120.6 82 67.1
Gohir.A07G113900 Gossypium hirsutum HOM05D007375 ORTHO05D009293 1.0e-25 120.6 85 63.5
Peaxi162Scf00259g00119 Petunia axillaris HOM05D007375 ORTHO05D009293 1.0e-25 120.6 82 68.3
MD03G1161000 Malus domestica HOM05D007375 ORTHO05D009293 1.4e-25 120.2 165 46.1
HPP92_000979 Vanilla planifolia HOM05D007375 ORTHO05D009293 1.4e-25 120.2 92 60.9
Actinidia22459 Actinidia chinensis HOM05D007375 ORTHO05D009293 2.3e-25 119.4 145 47.6
Nitab4.5_0002498g0050 Nicotiana tabacum HOM05D007375 ORTHO05D009293 2.3e-25 119.4 84 64.3
Nitab4.5_0007815g0030 Nicotiana tabacum HOM05D007375 ORTHO05D009293 3.0e-25 119.0 84 64.3
Gohir.D07G117600 Gossypium hirsutum HOM05D007375 ORTHO05D009293 3.9e-25 118.6 85 62.4
Gorai.001G126500 Gossypium raimondii HOM05D007375 ORTHO05D009293 3.9e-25 118.6 85 62.4
Aa31LG2G17160 Aethionema arabicum HOM05D007375 ORTHO05D009293 5.1e-25 118.2 82 64.6
Ciclev10029424m.g Citrus clementina HOM05D007375 ORTHO05D009293 6.7e-25 117.9 72 73.6
FAN16G0622 Fragaria x ananassa HOM05D007375 ORTHO05D009293 1.5e-24 116.7 67 74.6
vmacro14306 Vaccinium macrocarpon HOM05D007375 ORTHO05D009293 1.5e-24 116.7 137 51.1
CANSAT54G0888 Cannabis sativa HOM05D007375 ORTHO05D009293 2.0e-24 116.3 82 65.9
CDE07G1152 Ceratophyllum demersum HOM05D007375 ORTHO05D009293 2.6e-24 115.9 82 63.4
Hund18815 Selenicereus undatus HOM05D007375 ORTHO05D009293 3.3e-24 115.5 157 42.0
ClCG06G014160 Citrullus lanatus HOM05D007375 ORTHO05D009293 4.4e-24 115.2 89 59.6
FAN11G1199 Fragaria x ananassa HOM05D007375 ORTHO05D009293 4.4e-24 115.2 67 73.1
Solyc11g071710.2 Solanum lycopersicum HOM05D007375 ORTHO05D009293 7.4e-24 114.4 84 61.9
Sopen11g029380 Solanum pennellii HOM05D007375 ORTHO05D009293 7.4e-24 114.4 84 61.9
MELO3C017379.2 Cucumis melo HOM05D007375 ORTHO05D009293 9.7e-24 114.0 84 61.9
CsaV3_1G004520 Cucumis sativus L. HOM05D007375 ORTHO05D009293 9.7e-24 114.0 84 61.9
Phvul.008G210600 Phaseolus vulgaris HOM05D007375 ORTHO05D009293 9.7e-24 114.0 83 60.2
CiPaw.13G125500 Carya illinoinensis HOM05D007375 ORTHO05D009293 1.3e-23 113.6 153 45.1
Glyma.02G271400 Glycine max HOM05D007375 ORTHO05D009293 1.3e-23 113.6 146 45.9
Cfa010224 Carpinus fangiana HOM05D007375 ORTHO05D009293 1.7e-23 113.2 70 70.0
Sed0019994 Sechium edule HOM05D007375 ORTHO05D009293 1.7e-23 113.2 84 61.9
FAN25G3479 Fragaria x ananassa HOM05D000507 ORTHO05D000416 2.8e-23 112.5 66 72.7
Thhalv10021645m.g Eutrema salsugineum HOM05D007375 ORTHO05D009293 3.7e-23 112.1 82 59.8
CAN.G742.2 Capsicum annuum HOM05D007375 ORTHO05D009293 4.8e-23 111.7 84 60.7
Sp5g17280 Schrenkiella parvula HOM05D007375 ORTHO05D009293 4.8e-23 111.7 82 61.0
VMungo0647G0066 Vigna mungo HOM05D007375 ORTHO05D009293 4.8e-23 111.7 83 59.0
LjContig00564g0003226 Lotus japonicus HOM05D007375 ORTHO05D009293 6.3e-23 111.3 150 46.0
CARHR152710 Cardamine hirsuta HOM05D007375 ORTHO05D009293 8.2e-23 110.9 82 61.0
PGSC0003DMG401003010 Solanum tuberosum HOM05D007375 ORTHO05D009293 8.2e-23 110.9 84 60.7
AL5G22060 Arabidopsis lyrata HOM05D007375 ORTHO05D009293 1.1e-22 110.5 82 61.0
AT3G44020 Arabidopsis thaliana HOM05D007375 ORTHO05D009293 1.1e-22 110.5 82 61.0
BcaC01g02084 Brassica carinata HOM05D007375 ORTHO05D009293 1.4e-22 110.2 82 59.8
C03p68750 Brassica napus HOM05D007375 ORTHO05D009293 1.4e-22 110.2 82 59.8
BolC3t19129H Brassica oleracea HOM05D007375 ORTHO05D009293 1.4e-22 110.2 82 59.8
Lalb_Chr10g0105741 Lupinus albus HOM05D007375 ORTHO05D009293 1.8e-22 109.8 147 44.2
BcaB01g01208 Brassica carinata HOM05D007375 ORTHO05D009293 2.4e-22 109.4 82 59.8
A06p22290 Brassica napus HOM05D007375 ORTHO05D009293 2.4e-22 109.4 82 59.8
BraA06t25313Z Brassica rapa HOM05D007375 ORTHO05D009293 2.4e-22 109.4 82 59.8
Mapoly0036s0048 Marchantia polymorpha HOM05D007375 ORTHO05D009293 2.4e-22 109.4 86 61.6
Psat2g023920 Pisum sativum HOM05D007375 ORTHO05D009293 3.1e-22 109.0 155 45.8
Carub.0005s0977 Capsella rubella HOM05D007375 ORTHO05D009293 1.0e-20 104.0 82 59.8
Pp3c7_23060 Physcomitrium patens HOM05D007375 ORTHO05D009293 3.8e-20 102.1 86 55.8
Medtr5g086670 Medicago truncatula HOM05D007375 ORTHO05D009293 6.5e-20 101.3 142 44.4
Pp3c11_5080 Physcomitrium patens HOM05D007375 ORTHO05D009293 8.5e-20 100.9 86 54.7
arahy.Tifrunner.gnm1.ann1.MUTN5S Arachis hypogaea HOM05D007375 ORTHO05D009293 1.4e-19 100.1 83 56.6
arahy.Tifrunner.gnm1.ann1.R1KXAM Arachis hypogaea HOM05D007375 ORTHO05D009293 1.4e-19 100.1 83 56.6
Eucgr.J00596 Eucalyptus grandis HOM05D007375 ORTHO05D009293 2.2e-15 86.3 47 70.2
unitig_22.g6168 Utricularia gibba HOM05D007375 ORTHO05D009293 1.4e-14 83.6 90 54.4
Cre03.g201050 Chlamydomonas reinhardtii HOM05D007375 ORTHO05D009293 1.5e-11 73.6 106 37.7
Actinidia06350 Actinidia chinensis HOM05D007375 ORTHO05D009293 1.2e-10 70.5 43 72.1
SGA_v2.0_scaffold7G04014 Striga asiatica HOM05D007375 ORTHO05D009293 2.7e-10 69.3 109 43.1
Glyma.14G019800 Glycine max HOM05D007375 ORTHO05D009293 6.7e-09 64.7 37 75.7
MCO03G284 Micromonas commoda HOM05D007375 ORTHO05D009293 2.6e-08 62.8 75 40.0
Haze_23611 Corylus avellana HOM05D007375 ORTHO05D009293 3.3e-08 62.4 39 69.2
Oeu048815.1 Olea europaea HOM05D007375 ORTHO05D009293 3.3e-08 62.4 43 67.4
Aa31LG4G13610 Aethionema arabicum HOM05D007375 ORTHO05D009293 5.7e-08 61.6 37 70.3
COL.COLO4_25390 Corchorus olitorius HOM05D007375 ORTHO05D009293 8.2e-07 57.8 31 74.2
Glyma.14G019700 Glycine max HOM05D007375 ORTHO05D009293 4.1e-06 55.5 34 70.6


User provided reference genes

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