Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 3.0e-63 245.0 120 100.0
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 4.7e-24 114.8 88 62.5
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 4.7e-24 114.8 101 61.4
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 6.1e-24 114.4 89 64.0
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 2.0e-22 109.4 89 59.6
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 2.6e-22 109.0 89 60.7
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 2.6e-22 109.0 90 62.2
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 4.4e-22 108.2 95 55.8
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 4.4e-22 108.2 90 58.9
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 4.4e-22 108.2 89 60.7
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 5.7e-22 107.8 89 61.8
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 5.7e-22 107.8 89 61.8
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 5.7e-22 107.8 89 61.8
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 5.7e-22 107.8 89 59.6
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 7.5e-22 107.5 90 61.1
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 1.3e-21 106.7 83 57.8
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 2.2e-21 105.9 95 57.9
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 2.8e-21 105.5 89 60.7
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 3.7e-21 105.1 95 57.9
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 3.7e-21 105.1 89 56.2
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 3.7e-21 105.1 95 56.8
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 4.8e-21 104.8 91 59.3
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 4.8e-21 104.8 89 58.4
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 4.8e-21 104.8 89 58.4
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 4.8e-21 104.8 95 55.8
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 4.8e-21 104.8 93 58.1
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 6.3e-21 104.4 89 57.3
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 6.3e-21 104.4 95 53.7
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 6.3e-21 104.4 83 57.8
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 6.3e-21 104.4 95 58.9
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 8.3e-21 104.0 92 59.8
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 1.1e-20 103.6 90 60.0
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 1.1e-20 103.6 83 57.8
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 1.4e-20 103.2 95 56.8
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 1.4e-20 103.2 93 55.9
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 1.8e-20 102.8 90 58.9
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 1.8e-20 102.8 90 55.6
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 1.8e-20 102.8 89 55.1
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.8e-20 102.8 86 53.5
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 2.4e-20 102.4 89 58.4
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 2.4e-20 102.4 93 57.0
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 3.1e-20 102.1 83 60.2
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 3.1e-20 102.1 87 57.5
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 3.1e-20 102.1 95 52.6
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 3.1e-20 102.1 89 55.1
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 3.1e-20 102.1 89 57.3
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 3.1e-20 102.1 86 55.8
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 4.1e-20 101.7 85 56.5
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 4.1e-20 101.7 83 59.0
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 4.1e-20 101.7 89 55.1
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 5.3e-20 101.3 89 58.4
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 5.3e-20 101.3 89 58.4
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 7.0e-20 100.9 93 52.7
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 7.0e-20 100.9 94 55.3
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 7.0e-20 100.9 89 57.3
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 9.1e-20 100.5 83 55.4
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 9.1e-20 100.5 89 55.1
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 1.2e-19 100.1 95 51.6
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 1.2e-19 100.1 89 55.1
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 1.6e-19 99.8 83 55.4
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 2.0e-19 99.4 83 54.2
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 2.0e-19 99.4 94 54.3
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 2.0e-19 99.4 99 53.5
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 2.0e-19 99.4 99 53.5
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 2.7e-19 99.0 90 55.6
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 3.5e-19 98.6 86 55.8
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 3.5e-19 98.6 87 54.0
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 3.5e-19 98.6 89 52.8
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 3.5e-19 98.6 89 52.8
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 5.9e-19 97.8 89 51.7
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 5.9e-19 97.8 89 52.8
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 5.9e-19 97.8 97 52.6
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 1.0e-18 97.1 95 50.5
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 1.3e-18 96.7 95 50.5
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 1.3e-18 96.7 94 52.1
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 1.7e-18 96.3 83 54.2
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 1.7e-18 96.3 94 52.1
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 1.7e-18 96.3 90 53.3
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 2.2e-18 95.9 89 53.9
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 2.9e-18 95.5 85 50.6
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 8.5e-18 94.0 83 53.0
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 8.5e-18 94.0 81 53.1
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 1.1e-17 93.6 90 50.0
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 1.5e-17 93.2 95 48.4
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 2.5e-17 92.4 88 53.4
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 2.1e-16 89.4 115 42.6
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 4.7e-16 88.2 89 50.6
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 6.1e-16 87.8 83 50.6
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 4.0e-15 85.1 83 49.4
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 4.0e-15 85.1 84 50.0
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 6.8e-15 84.3 89 50.6
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 8.8e-15 84.0 96 46.9
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 8.8e-15 84.0 87 50.6
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 3.4e-14 82.0 85 50.6
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 5.7e-14 81.3 83 50.6
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 1.4e-12 76.6 95 48.4
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 1.8e-12 76.3 83 49.4
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 3.1e-12 75.5 79 48.1
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 7.0e-12 74.3 83 45.8
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 7.0e-12 74.3 83 45.8
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 7.0e-12 74.3 83 45.8
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.7e-11 72.4 89 48.3
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 3.5e-11 72.0 83 44.6
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.3e-10 70.1 92 46.7
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 1.7e-10 69.7 41 70.7
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 1.7e-10 69.7 41 73.2
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 6.6e-10 67.8 63 49.2
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 4.2e-09 65.1 62 50.0
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 4.2e-09 65.1 89 41.6
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 2.8e-08 62.4 89 42.7
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 3.6e-08 62.0 83 43.4
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 4.7e-08 61.6 67 46.3
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.8e-07 59.7 83 42.2
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 4.0e-07 58.5 41 58.5
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 1.2e-06 57.0 44 61.4
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 1.5e-06 56.6 55 49.1
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 3.4e-06 55.5 44 61.4


User provided reference genes

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