Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0911900 Oryza sativa ssp. japonica HOM05D000595 ORTHO05D008454 2.4e-267 924.9 447 100.0
Nn1g07860 Nelumbo nucifera HOM05D000595 ORTHO05D008454 3.8e-188 661.8 426 72.8
HPP92_008949 Vanilla planifolia HOM05D000595 ORTHO05D008454 8.2e-183 644.0 439 69.5
TAR636G3484 Trochodendron aralioides HOM05D000595 ORTHO05D008454 1.1e-182 643.7 422 70.9
Aqoxy2G03878 Aquilegia oxysepala HOM05D000595 ORTHO05D008454 4.1e-182 641.7 431 68.9
PSO017G5401 Papaver somniferum HOM05D000595 ORTHO05D008454 1.3e-180 636.7 423 70.0
Sc13g0000130 Simmondsia chinensis HOM05D000595 ORTHO05D008454 1.9e-179 632.9 423 69.5
Dinv29591 Davidia involucrata HOM05D000595 ORTHO05D008454 3.2e-179 632.1 453 67.3
arahy.Tifrunner.gnm1.ann1.897VZR Arachis hypogaea HOM05D000595 ORTHO05D008454 4.2e-179 631.7 435 70.3
arahy.Tifrunner.gnm1.ann1.G7HRZN Arachis hypogaea HOM05D000595 ORTHO05D008454 7.2e-179 630.9 435 70.3
PSO063G0672 Papaver somniferum HOM05D000595 ORTHO05D008454 1.6e-178 629.8 423 69.3
Prupe.1G006900 Prunus persica HOM05D000595 ORTHO05D008454 4.7e-178 628.2 419 70.9
Atru.chr4.1710 Acer truncatum HOM05D000595 ORTHO05D008454 1.0e-177 627.1 422 70.1
MD04G1008200 Malus domestica HOM05D000595 ORTHO05D008454 1.0e-177 627.1 422 70.4
Lj6g0010121 Lotus japonicus HOM05D000595 ORTHO05D008454 2.3e-177 625.9 438 68.9
CSS0010328 Camellia sinensis var. sinensis HOM05D000595 ORTHO05D008454 5.2e-177 624.8 409 70.4
Potri.001G314700 Populus trichocarpa HOM05D000595 ORTHO05D008454 5.2e-177 624.8 421 71.0
Psat1g165160 Pisum sativum HOM05D000595 ORTHO05D008454 6.8e-177 624.4 422 69.7
RcHm_v2.0_Chr4g0415411 Rosa chinensis HOM05D000595 ORTHO05D008454 5.7e-176 621.3 419 70.6
TWI53G1083 Tripterygium wilfordii HOM05D000595 ORTHO05D008454 5.7e-176 621.3 422 70.9
ATR1145G018 Amborella trichopoda HOM05D000595 ORTHO05D008454 1.3e-175 620.2 407 70.8
Glyma.15G133500 Glycine max HOM05D000595 ORTHO05D008454 1.3e-175 620.2 422 69.2
Lj6C558G7 Lonicera japonica HOM05D000595 ORTHO05D008454 3.7e-175 618.6 419 69.2
THA.LOC104801033 Tarenaya hassleriana HOM05D000595 ORTHO05D008454 4.8e-175 618.2 422 68.5
Ca_00886_v3 Cicer arietinum L. HOM05D000595 ORTHO05D001274 6.3e-175 617.8 421 68.9
TPR.G22264 Trifolium pratense HOM05D000595 ORTHO05D008454 6.3e-175 617.8 434 68.0
VMungo0540G0041 Vigna mungo HOM05D000595 ORTHO05D001274 6.3e-175 617.8 424 67.2
Cc03_g07770 Coffea canephora HOM05D000595 ORTHO05D008454 8.3e-175 617.5 430 67.0
Gorai.011G158900 Gossypium raimondii HOM05D000595 ORTHO05D008454 5.4e-174 614.8 417 70.3
Eucgr.H02785 Eucalyptus grandis HOM05D000595 ORTHO05D008454 2.0e-173 612.8 422 67.5
Thecc.04G204800 Theobroma cacao HOM05D000595 ORTHO05D008454 3.5e-173 612.1 422 69.7
Duzib151G0403 Durio zibethinus HOM05D000595 ORTHO05D008454 4.5e-173 611.7 422 69.9
Peaxi162Scf00652g00421 Petunia axillaris HOM05D000595 ORTHO05D008454 5.9e-173 611.3 421 68.6
Phvul.006G125200 Phaseolus vulgaris HOM05D000595 ORTHO05D008454 1.7e-172 609.8 422 68.0
Nitab4.5_0000850g0080 Nicotiana tabacum HOM05D000595 ORTHO05D008454 1.5e-171 606.7 435 67.1
Lalb_Chr15g0088911 Lupinus albus HOM05D000595 ORTHO05D008454 1.9e-171 606.3 422 68.2
PGR083G2732 Punica granatum HOM05D000595 ORTHO05D008454 1.9e-171 606.3 422 69.2
HanXRQChr07g0185731 Helianthus annuus HOM05D000595 ORTHO05D008454 5.5e-171 604.7 445 64.3
CAN.G767.41 Capsicum annuum HOM05D000595 ORTHO05D008454 9.5e-171 604.0 429 67.6
FvH4_4g15840 Fragaria vesca HOM05D000595 ORTHO05D008454 1.2e-170 603.6 419 68.3
Solyc12g098360.2 Solanum lycopersicum HOM05D000595 ORTHO05D008454 1.6e-170 603.2 423 68.1
Sopen12g033140 Solanum pennellii HOM05D000595 ORTHO05D008454 2.1e-170 602.8 423 68.3
Nitab4.5_0000676g0200 Nicotiana tabacum HOM05D000595 ORTHO05D008454 4.7e-170 601.7 425 67.1
CsaV3_1G042950 Cucumis sativus L. HOM05D000595 ORTHO05D008454 6.1e-170 601.3 420 68.8
Carub.0001s0414 Capsella rubella HOM05D000595 ORTHO05D008454 1.0e-169 600.5 422 66.6
Thhalv10007628m.g Eutrema salsugineum HOM05D000595 ORTHO05D008454 1.4e-169 600.1 422 66.4
Sed0004774 Sechium edule HOM05D000595 ORTHO05D008454 1.4e-169 600.1 443 67.0
ClCG05G003330 Citrullus lanatus HOM05D000595 ORTHO05D008454 5.2e-169 598.2 424 69.1
Nitab4.5_0005206g0070 Nicotiana tabacum HOM05D000595 ORTHO05D008454 6.8e-169 597.8 444 65.1
Aa31LG1G19900 Aethionema arabicum HOM05D000595 ORTHO05D008454 8.9e-169 597.4 421 65.1
Migut.N00379 Erythranthe guttata HOM05D000595 ORTHO05D008454 8.9e-169 597.4 422 67.1
AL1G14620 Arabidopsis lyrata HOM05D000595 ORTHO05D008454 1.2e-168 597.0 422 66.4
A10p03330 Brassica napus HOM05D000595 ORTHO05D008454 3.4e-168 595.5 423 66.2
BraA10t42609Z Brassica rapa HOM05D000595 ORTHO05D008454 3.4e-168 595.5 423 66.2
AT1G04900 Arabidopsis thaliana HOM05D000595 ORTHO05D008454 7.5e-168 594.3 422 66.1
FAN12G2005 Fragaria x ananassa HOM05D000595 ORTHO05D008454 2.8e-167 592.4 414 67.9
C05p03050 Brassica napus HOM05D000595 ORTHO05D008454 2.4e-166 589.3 424 65.8
BolC5t29087H Brassica oleracea HOM05D000595 ORTHO05D008454 2.4e-166 589.3 423 65.7
Gohir.A10G123700 Gossypium hirsutum HOM05D000595 ORTHO05D008454 5.9e-165 584.7 422 67.8
Sabra16G0199100 Salix brachista HOM05D000595 ORTHO05D008454 5.0e-164 581.6 485 60.4
Rhsim09G0055700 Rhododendron simsii HOM05D000595 ORTHO05D008454 4.3e-163 578.6 521 56.8
EL10Ac3g07487 Beta vulgaris HOM05D000595 ORTHO05D008454 7.3e-163 577.8 426 65.3
MELO3C015176.2 Cucumis melo HOM05D000595 ORTHO05D008454 8.0e-162 574.3 450 63.6
Ah.13g078130 Amaranthus hybridus HOM05D000595 ORTHO05D008454 3.7e-159 565.5 410 67.1
vmacro00479 Vaccinium macrocarpon HOM05D000595 ORTHO05D008454 3.7e-159 565.5 549 54.5
CARHR004300 Cardamine hirsuta HOM05D000595 ORTHO05D008454 3.9e-156 555.4 422 62.6
Actinidia37010 Actinidia chinensis HOM05D000595 ORTHO05D008454 5.0e-156 555.1 393 67.4
COL.COLO4_09879 Corchorus olitorius HOM05D000595 ORTHO05D008454 4.3e-155 552.0 372 71.5
Ciclev10005247m.g Citrus clementina HOM05D000595 ORTHO05D008454 8.3e-151 537.7 365 69.0
ECA233G5324 Erigeron canadensis HOM05D000595 ORTHO05D008454 9.2e-150 534.3 378 66.9
Gohir.D10G142300 Gossypium hirsutum HOM05D000595 ORTHO05D008454 7.8e-149 531.2 362 69.6
FAN07G1333 Fragaria x ananassa HOM05D000595 ORTHO05D008454 1.7e-148 530.0 424 62.0
Lsat_1_v5_gn_6_60501 Lactuca sativa HOM05D000595 ORTHO05D008454 3.7e-143 512.3 362 64.9
FAN19G1967 Fragaria x ananassa HOM05D000595 ORTHO05D008454 6.0e-141 505.0 419 59.9
Haze_11606 Corylus avellana HOM05D000595 ORTHO05D008454 2.5e-139 499.6 393 63.4
AUR62020816 Chenopodium quinoa HOM05D000595 ORTHO05D008454 1.6e-138 496.9 382 63.1
DCAR_002262 Daucus carota HOM05D000595 ORTHO05D008454 4.0e-137 492.3 365 64.7
Medtr2g031240 Medicago truncatula HOM05D000595 ORTHO05D008454 4.4e-136 488.8 345 66.4
GSVIVG01000528001 Vitis vinifera HOM05D000595 ORTHO05D008454 2.1e-133 479.9 356 65.4
Sp1g03740 Schrenkiella parvula HOM05D000595 ORTHO05D008454 3.5e-133 479.2 347 65.1
QL06p024408 Quercus lobata HOM05D000595 ORTHO05D008454 4.3e-131 472.2 321 69.8
Lj6A570G15 Lonicera japonica HOM05D000595 ORTHO05D008454 5.6e-131 471.9 425 55.3
Manes.15G053200 Manihot esculenta HOM05D000595 ORTHO05D008454 8.4e-127 458.0 318 68.6
SGA_v2.0_scaffold216G42389 Striga asiatica HOM05D000595 ORTHO05D008454 3.3e-123 446.0 362 58.8
Pp3c9_4240 Physcomitrium patens HOM05D000595 ORTHO05D008454 3.1e-121 439.5 409 51.8
Zm00001eb143660 Zea mays HOM05D000595 ORTHO05D008454 1.2e-120 437.6 243 87.2
Mapoly0090s0077 Marchantia polymorpha HOM05D000595 ORTHO05D008454 2.2e-119 433.3 429 52.7
AUR62032918 Chenopodium quinoa HOM05D000595 ORTHO05D008454 7.4e-115 418.3 382 56.0
SMO367G0911 Selaginella moellendorffii HOM05D000595 ORTHO05D008454 3.4e-112 409.5 407 48.4
AagrBONN_evm.TU.Sc2ySwM_344.3272 Anthoceros agrestis HOM05D000595 ORTHO05D008454 4.9e-111 405.6 408 49.0
CiPaw.01G121900 Carya illinoinensis HOM05D000595 ORTHO05D008454 9.3e-110 401.4 286 67.1
unitig_744.g24024 Utricularia gibba HOM05D000595 ORTHO05D008454 3.4e-104 382.9 315 57.5
Cpa.g.sc59.134 Carica papaya HOM05D000595 ORTHO05D008454 8.2e-90 335.1 235 67.7
SEGI_10928 Sequoiadendron giganteum HOM05D000595 ORTHO05D008454 6.3e-82 308.9 230 63.0
FvH4_1g23291 Fragaria vesca HOM05D000595 ORTHO05D008454 2.5e-70 270.4 197 66.5
MCO01G355 Micromonas commoda HOM05D000595 ORTHO05D008454 2.0e-64 250.8 435 37.5
PRCOL_00005088 Prasinoderma coloniale HOM05D000595 ORTHO05D008454 4.0e-60 236.5 413 35.6
Actinidia33191 Actinidia chinensis HOM05D000595 ORTHO05D008454 1.0e-55 221.9 171 66.7
CiPaw.01G121800 Carya illinoinensis HOM05D000595 ORTHO05D008454 3.3e-54 216.9 140 72.9
FAN17G1124 Fragaria x ananassa HOM05D000595 ORTHO05D008454 4.1e-49 199.9 127 74.0
CBR_g19088 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-44 185.3 192 49.5
Cre13.g584700 Chlamydomonas reinhardtii HOM05D000595 ORTHO05D008454 3.4e-43 180.3 426 29.8
Cfa022406 Carpinus fangiana HOM05D000595 ORTHO05D008454 9.8e-43 178.7 436 30.5
Oeu016734.1 Olea europaea HOM05D000595 ORTHO05D008454 4.0e-36 156.8 236 37.7
CsaV3_6G039270 Cucumis sativus L. HOM05D000595 ORTHO05D008454 3.0e-31 140.6 89 73.0
QL06p024418 Quercus lobata HOM05D000595 ORTHO05D008454 1.1e-30 138.7 126 57.1
GSVIVG01000526001 Vitis vinifera HOM05D000595 ORTHO05D008454 7.3e-30 136.0 89 71.9
EL10Ac4g09027 Beta vulgaris HOM05D000595 ORTHO05D008454 2.4e-25 120.9 115 53.0
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 9.2e-25 119.0 125 48.0
CsaV3_6G039250 Cucumis sativus L. HOM05D000595 ORTHO05D008454 5.1e-23 113.2 72 72.2
Nn1g07859 Nelumbo nucifera HOM05D000595 ORTHO05D008454 5.4e-17 93.2 84 56.0
CDE09G0179 Ceratophyllum demersum HOM05D000595 ORTHO05D008454 7.1e-17 92.8 73 63.0
SEGI_41312 Sequoiadendron giganteum HOM05D000595 ORTHO05D008454 4.6e-16 90.1 50 78.0
unitig_744.g24023 Utricularia gibba HOM05D000595 ORTHO05D008454 1.3e-15 88.6 65 64.6
AUR62032919 Chenopodium quinoa HOM05D000595 ORTHO05D008454 1.1e-14 85.5 45 84.4
SEGI_06009 Sequoiadendron giganteum HOM05D000595 ORTHO05D008454 2.1e-08 64.7 63 44.4
Aqoxy3G00773 Aquilegia oxysepala HOM05D000595 ORTHO05D008454 2.7e-08 64.3 32 75.0


User provided reference genes

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