Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 1.2e-306 1055.8 600 100.0
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 1.2e-250 869.8 600 77.3
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.0e-183 645.2 612 60.1
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 9.1e-177 624.4 608 56.1
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 1.1e-174 617.5 626 54.5
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 7.2e-174 614.8 626 58.0
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 6.7e-172 608.2 609 58.8
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 6.7e-172 608.2 531 59.7
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 1.7e-170 603.6 524 59.5
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 2.8e-170 602.8 617 53.5
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 2.8e-170 602.8 626 57.5
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 1.4e-169 600.5 662 51.8
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 1.4e-169 600.5 626 57.0
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 3.1e-169 599.4 627 56.3
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 5.3e-169 598.6 608 58.1
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 7.0e-169 598.2 608 57.7
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 7.0e-169 598.2 605 53.2
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 1.2e-168 597.4 626 57.2
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 3.5e-168 595.9 625 57.1
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 3.5e-168 595.9 625 57.0
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 1.7e-167 593.6 625 57.0
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 5.0e-167 592.0 605 52.7
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 3.6e-165 585.9 626 50.8
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 6.1e-165 585.1 634 52.2
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 1.4e-164 583.9 607 57.3
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 1.4e-164 583.9 609 52.7
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 3.0e-164 582.8 626 50.5
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 4.0e-164 582.4 601 53.9
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 2.6e-163 579.7 606 52.6
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 4.4e-163 578.9 605 52.7
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 7.5e-163 578.2 628 51.9
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 7.5e-163 578.2 605 52.6
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 3.7e-162 575.9 545 56.3
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 3.7e-162 575.9 602 51.7
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 1.8e-161 573.5 608 53.9
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 7.0e-161 571.6 531 56.5
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 7.0e-161 571.6 620 52.7
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 9.1e-161 571.2 612 58.5
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 9.1e-161 571.2 611 56.6
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 1.6e-160 570.5 616 51.3
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 2.0e-160 570.1 608 51.3
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 2.0e-160 570.1 608 51.3
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 2.7e-160 569.7 618 51.1
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 2.7e-160 569.7 607 52.1
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 1.0e-159 567.8 620 52.1
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 1.3e-159 567.4 608 55.4
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 1.3e-159 567.4 615 51.1
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 2.2e-159 566.6 525 56.2
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 2.9e-159 566.2 626 53.2
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 3.8e-159 565.8 609 55.0
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 3.8e-159 565.8 611 56.0
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 5.0e-159 565.5 606 56.3
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 1.1e-158 564.3 613 55.3
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 1.9e-158 563.5 607 55.8
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 2.5e-158 563.1 608 54.4
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.2e-157 560.8 600 56.3
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 2.7e-157 559.7 640 53.4
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 1.0e-156 557.8 608 54.9
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.0e-156 557.8 600 56.0
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 6.8e-156 555.1 553 59.3
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 6.8e-156 555.1 629 52.8
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 1.2e-155 554.3 657 50.1
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 3.4e-155 552.7 526 60.1
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 3.4e-155 552.7 600 57.2
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 3.4e-155 552.7 570 52.3
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 5.7e-155 552.0 511 59.5
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 7.5e-155 551.6 628 55.4
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 7.5e-155 551.6 582 52.6
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 1.3e-154 550.8 611 50.4
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 2.2e-154 550.1 612 54.4
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 3.7e-154 549.3 609 54.5
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 8.3e-154 548.1 612 54.7
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 4.1e-153 545.8 597 56.3
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 9.1e-153 544.7 631 53.6
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 1.7e-151 540.4 648 49.7
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 5.0e-151 538.9 628 49.0
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 3.0e-148 529.6 607 56.2
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 6.8e-148 528.5 607 56.2
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 4.4e-147 525.8 613 53.5
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 9.2e-145 518.1 629 54.1
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 5.9e-144 515.4 629 53.6
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 1.7e-143 513.8 614 52.6
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 9.5e-142 508.1 610 51.0
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 6.1e-141 505.4 612 52.3
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 8.0e-141 505.0 597 48.6
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 8.3e-138 495.0 618 51.5
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.3e-135 487.6 465 57.2
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 3.3e-134 483.0 507 57.0
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 5.6e-134 482.3 612 50.5
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 7.8e-128 461.8 637 47.3
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 1.1e-126 458.0 436 56.4
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.9e-126 457.2 501 51.3
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 1.4e-124 451.1 452 54.2
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 3.4e-123 446.4 604 47.5
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 8.6e-119 431.8 631 44.4
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.6e-109 401.0 387 56.6
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 6.9e-108 395.6 610 44.4
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.0e-107 394.0 314 61.1
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 4.4e-107 392.9 626 40.3
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 9.9e-99 365.2 356 56.2
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 9.3e-97 358.6 372 57.3
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 1.5e-91 341.3 597 42.5
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 1.0e-90 338.6 356 50.6
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 2.2e-90 337.4 502 46.2
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 2.1e-85 320.9 286 61.5
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 8.7e-79 298.9 316 50.6
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.0e-67 261.2 507 35.5
MBI11_g46351_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 3.4e-67 260.4 249 59.8
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.4e-60 238.4 205 57.1
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.1e-60 237.3 217 54.8
CDE06G0744 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 3.2e-57 227.3 171 67.3
VMungo1309G0829 Vigna mungo HOM05D005390 ORTHO05D007086 9.4e-57 225.7 251 51.8
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.8e-53 214.2 195 54.9
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.6e-48 198.4 179 54.7
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 1.7e-37 161.8 194 57.2
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 4.5e-35 153.7 352 32.4
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.5e-35 153.7 118 60.2
Hma1.2p1_2683F.1_g326890 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 5.0e-34 150.2 140 58.6
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 2.0e-30 138.3 168 50.0
CsaV3_3G015410 Cucumis sativus L. HOM05D005390 ORTHO05D007086 5.9e-27 126.7 240 38.3
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.6e-26 123.2 97 59.8
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.1e-25 122.5 160 58.1
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 2.5e-25 121.3 160 57.5
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.2e-24 119.0 161 42.9
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.6e-24 117.5 93 61.3
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.4e-22 110.9 105 50.5
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.7e-21 108.6 76 65.8
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 2.9e-21 107.8 161 52.8
CARHR043650 Cardamine hirsuta HOM05D005390 ORTHO05D007086 1.5e-17 95.5 152 43.4
Nn1g06248 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.3e-17 93.2 52 84.6
CDE06G2390 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 5.2e-15 87.0 105 50.5
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 2.6e-14 84.7 304 26.0
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 6.4e-13 80.1 69 53.6
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 4.1e-12 77.4 78 51.3
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 1.9e-09 68.6 40 72.5
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 7.3e-09 66.6 62 51.6
Psat7g117320 Pisum sativum HOM05D005390 ORTHO05D004709 2.1e-08 65.1 63 54.0
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 8.1e-08 63.2 42 66.7
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 1.2e-06 59.3 42 54.8
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 1.2e-06 59.3 42 54.8
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 1.2e-06 59.3 42 54.8


User provided reference genes

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