Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 0.0e+00 1585.9 941 100.0
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 0.0e+00 1077.8 950 72.6
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 2.4e-301 1038.9 975 68.5
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 5.6e-149 532.7 871 46.5
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 1.6e-135 488.0 860 45.3
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 1.3e-134 485.0 871 45.7
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 2.0e-130 471.1 868 43.7
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 5.9e-130 469.5 848 43.3
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.0e-129 468.8 841 43.2
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 3.8e-129 466.8 884 38.7
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 5.0e-129 466.5 862 42.3
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 8.5e-129 465.7 890 42.6
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 1.9e-128 464.5 852 40.3
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 3.2e-128 463.8 846 45.2
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 7.2e-128 462.6 827 40.0
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 9.4e-128 462.2 858 45.7
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 9.4e-128 462.2 842 47.0
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 2.1e-127 461.1 839 42.7
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 2.1e-127 461.1 875 42.2
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 2.7e-127 460.7 856 40.7
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 2.7e-127 460.7 858 43.1
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 3.6e-127 460.3 887 40.6
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 3.6e-127 460.3 846 38.2
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 3.6e-127 460.3 868 41.0
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 7.9e-127 459.1 846 45.0
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 1.0e-126 458.8 858 45.5
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 1.8e-126 458.0 872 44.2
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 1.8e-126 458.0 876 45.2
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 3.0e-126 457.2 833 40.0
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 3.0e-126 457.2 900 41.8
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 3.9e-126 456.8 898 42.8
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 8.8e-126 455.7 872 43.2
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 1.1e-125 455.3 851 45.6
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 1.1e-125 455.3 863 43.1
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 2.5e-125 454.1 872 43.1
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 3.3e-125 453.8 876 45.4
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 3.3e-125 453.8 864 43.4
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 1.3e-124 451.8 860 39.9
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 2.8e-124 450.7 882 42.0
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 3.7e-124 450.3 853 43.1
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 8.2e-124 449.1 856 41.1
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 1.4e-123 448.4 844 39.0
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 2.4e-123 447.6 857 43.9
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 4.1e-123 446.8 855 43.0
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 9.1e-123 445.7 873 42.5
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 1.2e-122 445.3 890 38.4
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 2.6e-122 444.1 847 41.0
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 4.5e-122 443.4 848 40.6
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 5.9e-122 443.0 853 42.8
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 5.9e-122 443.0 860 45.9
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 1.0e-121 442.2 864 41.7
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 1.7e-121 441.4 882 40.4
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 1.7e-121 441.4 876 45.2
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 3.8e-121 440.3 866 42.3
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 1.9e-120 438.0 870 43.6
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 2.5e-120 437.6 858 44.8
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 2.5e-120 437.6 856 43.9
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 3.6e-119 433.7 880 44.2
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.4e-118 431.8 844 44.2
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 3.9e-118 430.3 857 38.5
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 5.1e-118 429.9 911 38.1
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 6.7e-118 429.5 880 41.2
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 2.6e-117 427.6 883 42.2
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 7.4e-117 426.0 890 41.7
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 7.4e-117 426.0 890 43.6
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 1.7e-116 424.9 904 41.3
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 1.7e-116 424.9 869 41.0
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 3.7e-116 423.7 853 41.0
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 6.3e-116 422.9 858 41.5
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 8.2e-116 422.5 929 40.4
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 2.4e-115 421.0 890 42.1
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 1.7e-113 414.8 883 41.8
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 5.0e-113 413.3 861 38.7
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 8.5e-113 412.5 874 41.1
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 1.1e-112 412.1 891 42.4
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 1.5e-112 411.8 898 41.8
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 1.6e-111 408.3 874 40.8
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 1.6e-111 408.3 869 42.6
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 4.7e-111 406.8 845 40.5
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 8.0e-111 406.0 848 40.4
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 1.8e-110 404.8 817 45.2
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 3.0e-110 404.1 823 41.2
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 6.7e-110 402.9 845 40.1
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 2.6e-109 401.0 846 40.5
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 1.3e-108 398.7 850 43.4
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 3.7e-108 397.1 888 39.8
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 1.1e-107 395.6 873 40.5
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 1.1e-107 395.6 870 38.6
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 1.4e-107 395.2 839 36.4
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 1.8e-107 394.8 900 36.0
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 2.6e-106 391.0 892 42.4
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 2.9e-105 387.5 894 43.1
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 3.8e-105 387.1 847 40.6
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 3.2e-104 384.0 847 40.5
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 5.5e-104 383.3 743 42.9
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 3.6e-103 380.6 851 40.5
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 6.1e-103 379.8 889 41.7
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 8.0e-103 379.4 851 40.4
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 1.0e-102 379.0 869 36.9
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 1.0e-102 379.0 871 40.0
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 1.6e-98 365.2 749 41.1
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 2.1e-95 354.8 855 38.7
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 2.2e-92 344.7 521 44.7
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 3.1e-91 340.9 840 36.2
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 4.1e-91 340.5 737 41.5
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 3.7e-84 317.4 1000 32.6
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 1.4e-83 315.5 496 43.5
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 3.2e-83 314.3 824 37.0
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 3.0e-81 307.8 786 40.2
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 1.1e-70 272.7 495 40.0
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 1.4e-62 245.7 667 38.4
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 7.6e-53 213.4 517 35.2
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 2.9e-52 211.5 517 35.4
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 8.4e-52 209.9 225 55.6
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 6.2e-47 193.7 191 60.2
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 1.5e-45 189.1 731 33.7
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 1.0e-41 176.4 862 27.8
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 9.0e-38 163.3 448 31.7
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 3.4e-37 161.4 370 34.9
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 9.3e-35 153.3 631 26.6
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 4.6e-34 151.0 318 35.8
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 3.0e-33 148.3 138 63.8
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 1.5e-29 136.0 108 67.6
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 1.0e-28 133.3 208 43.8
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 1.6e-26 125.9 109 56.9
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 4.6e-26 124.4 165 42.4
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 1.6e-23 115.9 225 35.6
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 3.4e-21 108.2 247 36.0
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 9.3e-19 100.1 189 36.5
Cre12.g550152 Chlamydomonas reinhardtii HOM05D005855 ORTHO05D006406 3.9e-09 68.2 124 41.9
MCO02G251 Micromonas commoda HOM05D005855 ORTHO05D006406 1.1e-06 60.1 369 24.1
RcHm_v2.0_Chr5g0011851 Rosa chinensis HOM05D005855 ORTHO05D006406 5.3e-06 57.8 47 55.3


User provided reference genes

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