Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0887100 Oryza sativa ssp. japonica HOM05D005661 ORTHO05D007997 4.8e-94 347.8 175 100.0
Zm00001eb365960 Zea mays HOM05D005661 ORTHO05D007997 1.5e-87 326.2 175 91.4
Zm00001eb145390 Zea mays HOM05D005661 ORTHO05D007997 4.1e-85 318.2 175 89.1
Manes.14G146200 Manihot esculenta HOM05D005661 ORTHO05D007997 3.8e-75 285.0 172 80.2
Potri.004G230200 Populus trichocarpa HOM05D005661 ORTHO05D007997 1.4e-74 283.1 172 79.7
unitig_21.g20570 Utricularia gibba HOM05D005661 ORTHO05D007997 3.2e-74 282.0 172 79.1
Manes.14G166900 Manihot esculenta HOM05D005661 ORTHO05D007997 5.5e-74 281.2 172 79.7
Nitab4.5_0001085g0130 Nicotiana tabacum HOM05D005661 ORTHO05D007997 1.6e-73 279.6 174 77.0
PGR142G1782 Punica granatum HOM05D005661 ORTHO05D007997 1.6e-73 279.6 172 79.1
Nitab4.5_0006159g0030 Nicotiana tabacum HOM05D005661 ORTHO05D007997 2.1e-73 279.3 172 77.9
Aqoxy1G02010 Aquilegia oxysepala HOM05D005661 ORTHO05D007997 2.7e-73 278.9 172 77.3
CAN.G1379.8 Capsicum annuum HOM05D005661 ORTHO05D007997 6.1e-73 277.7 172 77.3
PGSC0003DMG401018218 Solanum tuberosum HOM05D005661 ORTHO05D007997 1.4e-72 276.6 172 76.7
TPR.G5996 Trifolium pratense HOM05D005661 ORTHO05D007997 1.4e-72 276.6 174 79.3
Glyma.17G002400 Glycine max HOM05D005661 ORTHO05D007997 1.8e-72 276.2 172 77.9
ATR1089G013 Amborella trichopoda HOM05D005661 ORTHO05D007997 2.3e-72 275.8 172 78.5
Eucgr.I02806 Eucalyptus grandis HOM05D005661 ORTHO05D007997 2.3e-72 275.8 172 76.7
SEGI_39309 Sequoiadendron giganteum HOM05D005661 ORTHO05D007997 2.3e-72 275.8 173 77.5
Solyc01g102820.4 Solanum lycopersicum HOM05D005661 ORTHO05D007997 3.0e-72 275.4 172 76.7
Sopen01g045220 Solanum pennellii HOM05D005661 ORTHO05D007997 3.0e-72 275.4 172 76.7
Nn5g27134 Nelumbo nucifera HOM05D005661 ORTHO05D007997 3.9e-72 275.0 172 76.7
QL02p103676 Quercus lobata HOM05D005661 ORTHO05D007997 3.9e-72 275.0 172 77.3
TAR628G0241 Trochodendron aralioides HOM05D005661 ORTHO05D007997 3.9e-72 275.0 172 77.3
VMungo1215G1111 Vigna mungo HOM05D005661 ORTHO05D007997 3.9e-72 275.0 175 77.1
Dinv38445 Davidia involucrata HOM05D005661 ORTHO05D007997 6.7e-72 274.2 172 76.2
Gohir.A06G112500 Gossypium hirsutum HOM05D005661 ORTHO05D007997 6.7e-72 274.2 172 76.7
Psat0s2555g0200 Pisum sativum HOM05D005661 ORTHO05D007997 6.7e-72 274.2 172 78.5
THA.LOC104801778 Tarenaya hassleriana HOM05D005661 ORTHO05D007997 8.8e-72 273.9 172 77.9
Ciclev10002035m.g Citrus clementina HOM05D005661 ORTHO05D007997 1.1e-71 273.5 172 76.7
Dinv29650 Davidia involucrata HOM05D005661 ORTHO05D007997 1.1e-71 273.5 172 76.2
Oeu000159.1 Olea europaea HOM05D005661 ORTHO05D007997 1.1e-71 273.5 172 76.7
Carub.0005s0153 Capsella rubella HOM05D005661 ORTHO05D007997 1.5e-71 273.1 173 75.7
GSVIVG01023131001 Vitis vinifera HOM05D005661 ORTHO05D007997 1.5e-71 273.1 172 76.7
CARHR145060 Cardamine hirsuta HOM05D005661 ORTHO05D007997 2.0e-71 272.7 173 75.1
COL.COLO4_31208 Corchorus olitorius HOM05D005661 ORTHO05D007997 2.6e-71 272.3 172 76.7
TWI23G0175 Tripterygium wilfordii HOM05D005661 ORTHO05D007997 3.3e-71 271.9 171 77.2
CSS0021874 Camellia sinensis var. sinensis HOM05D005661 ORTHO05D007997 4.4e-71 271.6 172 76.7
Peaxi162Scf00194g01045 Petunia axillaris HOM05D005661 ORTHO05D007997 4.4e-71 271.6 172 76.2
MSTRG.16459 Avicennia marina HOM05D005661 ORTHO05D007997 5.7e-71 271.2 172 76.2
FAN08G1685 Fragaria x ananassa HOM05D005661 ORTHO05D007997 5.7e-71 271.2 172 76.2
Prupe.1G586600 Prunus persica HOM05D005661 ORTHO05D007997 5.7e-71 271.2 172 77.9
Cc02_g23630 Coffea canephora HOM05D005661 ORTHO05D007997 7.4e-71 270.8 171 77.8
ECA246G0516 Erigeron canadensis HOM05D005661 ORTHO05D007997 7.4e-71 270.8 172 76.7
AL5G11770 Arabidopsis lyrata HOM05D005661 ORTHO05D007997 9.7e-71 270.4 173 74.6
Lsat_1_v5_gn_9_124861 Lactuca sativa HOM05D005661 ORTHO05D007997 9.7e-71 270.4 172 76.2
MD15G1444200 Malus domestica HOM05D005661 ORTHO05D007997 9.7e-71 270.4 172 76.2
Cfa004424 Carpinus fangiana HOM05D005661 ORTHO05D007997 1.7e-70 269.6 172 74.4
FAN04G2212 Fragaria x ananassa HOM05D005661 ORTHO05D007997 1.7e-70 269.6 172 75.6
Gorai.010G134700 Gossypium raimondii HOM05D005661 ORTHO05D007997 1.7e-70 269.6 172 76.2
PSO210G4998 Papaver somniferum HOM05D005661 ORTHO05D007997 2.2e-70 269.2 174 76.4
Thecc.06G064100 Theobroma cacao HOM05D005661 ORTHO05D007997 2.2e-70 269.2 172 75.0
Sc09g0007750 Simmondsia chinensis HOM05D005661 ORTHO05D007997 2.8e-70 268.9 175 70.9
CANSAT01G0358 Cannabis sativa HOM05D005661 ORTHO05D007997 3.7e-70 268.5 172 74.4
DCAR_031998 Daucus carota HOM05D005661 ORTHO05D007997 3.7e-70 268.5 172 75.0
HanXRQChr09g0249911 Helianthus annuus HOM05D005661 ORTHO05D007997 3.7e-70 268.5 172 75.6
HPP92_003715 Vanilla planifolia HOM05D005661 ORTHO05D007997 3.7e-70 268.5 170 76.5
AT2G02500 Arabidopsis thaliana HOM05D005661 ORTHO05D007997 4.8e-70 268.1 173 74.0
Gohir.D06G117100 Gossypium hirsutum HOM05D005661 ORTHO05D007997 4.8e-70 268.1 172 75.6
HPP92_003721 Vanilla planifolia HOM05D005661 ORTHO05D007997 4.8e-70 268.1 168 76.8
BcaB07g30331 Brassica carinata HOM05D005661 ORTHO05D007997 6.3e-70 267.7 172 75.0
C02p50650 Brassica napus HOM05D005661 ORTHO05D007997 6.3e-70 267.7 172 74.4
Migut.B00706 Erythranthe guttata HOM05D005661 ORTHO05D007997 6.3e-70 267.7 172 75.6
Actinidia11729 Actinidia chinensis HOM05D005661 ORTHO05D007997 8.2e-70 267.3 176 74.4
Aa31LG2G7610 Aethionema arabicum HOM05D005661 ORTHO05D007997 8.2e-70 267.3 172 74.4
Thhalv10004647m.g Eutrema salsugineum HOM05D005661 ORTHO05D007997 8.2e-70 267.3 172 75.0
HanXRQChr05g0153021 Helianthus annuus HOM05D005661 ORTHO05D007997 8.2e-70 267.3 172 75.6
FvH4_5g27480 Fragaria vesca HOM05D005661 ORTHO05D007997 1.1e-69 266.9 172 75.0
BcaC03g17145 Brassica carinata HOM05D005661 ORTHO05D007997 1.4e-69 266.5 172 73.8
A02p32920 Brassica napus HOM05D005661 ORTHO05D007997 1.4e-69 266.5 172 74.4
BraA02t08315Z Brassica rapa HOM05D005661 ORTHO05D007997 1.4e-69 266.5 172 74.4
BolC2t11148H Brassica oleracea HOM05D005661 ORTHO05D007997 3.1e-69 265.4 172 73.8
RcHm_v2.0_Chr7g0218881 Rosa chinensis HOM05D005661 ORTHO05D007997 4.1e-69 265.0 172 75.0
MSTRG.20341 Avicennia marina HOM05D005661 ORTHO05D007997 5.3e-69 264.6 172 75.6
MELO3C016431.2 Cucumis melo HOM05D005661 ORTHO05D007997 7.0e-69 264.2 172 73.8
CsaV3_3G006740 Cucumis sativus L. HOM05D005661 ORTHO05D007997 7.0e-69 264.2 172 74.4
MD08G1249400 Malus domestica HOM05D005661 ORTHO05D007997 7.0e-69 264.2 172 75.0
Sp2g13750 Schrenkiella parvula HOM05D005661 ORTHO05D007997 7.0e-69 264.2 172 73.8
Rhsim11G0115300 Rhododendron simsii HOM05D005661 ORTHO05D007997 1.2e-68 263.5 183 71.0
Mapoly0006s0146 Marchantia polymorpha HOM05D005661 ORTHO05D007997 1.5e-68 263.1 175 73.7
Pp3c15_1010 Physcomitrium patens HOM05D005661 ORTHO05D007997 2.6e-68 262.3 173 72.3
DCAR_001732 Daucus carota HOM05D005661 ORTHO05D007997 3.5e-68 261.9 172 75.0
MBI06_g17067_MAGBIO Magnolia biondii HOM05D005661 ORTHO05D007997 3.5e-68 261.9 172 73.3
FAN13G1518 Fragaria x ananassa HOM05D005661 ORTHO05D007997 7.7e-68 260.8 172 73.3
Pp3c9_590 Physcomitrium patens HOM05D005661 ORTHO05D007997 1.7e-67 259.6 173 71.1
Phvul.003G090900 Phaseolus vulgaris HOM05D005661 ORTHO05D007997 2.9e-67 258.8 172 73.8
Lj4g0018255 Lotus japonicus HOM05D005661 ORTHO05D007997 3.8e-67 258.5 173 74.0
AUR62042241 Chenopodium quinoa HOM05D005661 ORTHO05D007997 1.1e-66 256.9 182 68.7
Ca_13523_v3 Cicer arietinum L. HOM05D005661 ORTHO05D007997 6.1e-65 251.1 161 77.0
SMO367G1090 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 2.3e-64 249.2 171 69.6
Haze_09964 Corylus avellana HOM05D005661 ORTHO05D007997 1.5e-63 246.5 156 76.3
Medtr4g134540 Medicago truncatula HOM05D005661 ORTHO05D007997 3.3e-63 245.4 161 75.8
Sabra01G0175500 Salix brachista HOM05D005661 ORTHO05D007997 7.4e-63 244.2 244 56.1
EL10Ac6g13962 Beta vulgaris HOM05D005661 ORTHO05D007997 8.2e-62 240.7 157 74.5
AUR62032486 Chenopodium quinoa HOM05D005661 ORTHO05D007997 1.1e-61 240.4 182 67.6
Lalb_Chr07g0176831 Lupinus albus HOM05D005661 ORTHO05D007997 2.4e-61 239.2 160 72.5
arahy.Tifrunner.gnm1.ann1.PPAS6H Arachis hypogaea HOM05D005661 ORTHO05D007997 1.9e-58 229.6 175 65.7
MCO15G500 Micromonas commoda HOM05D005661 ORTHO05D007997 5.2e-56 221.5 174 62.1
ClCG10G007530 Citrullus lanatus HOM05D005661 ORTHO05D007997 8.8e-56 220.7 264 48.9
arahy.Tifrunner.gnm1.ann1.FQN863 Arachis hypogaea HOM05D005661 ORTHO05D007997 2.6e-55 219.2 172 65.7
Ah.02g128470 Amaranthus hybridus HOM05D005661 ORTHO05D007997 9.1e-53 210.7 189 57.7
CDE02G0980 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 3.8e-51 205.3 174 62.1
Cre16.g679669 Chlamydomonas reinhardtii HOM05D005661 ORTHO05D007997 1.5e-50 203.4 175 56.0
Lj5A292T53 Lonicera japonica HOM05D005661 ORTHO05D007997 1.9e-50 203.0 168 65.5
SGA_v2.0_scaffold131G34439 Striga asiatica HOM05D005661 ORTHO05D007997 2.1e-49 199.5 172 61.6
Cpa.g.sc173.2 Carica papaya HOM05D005661 ORTHO05D007997 2.7e-49 199.1 138 71.0
Lj5A292T55 Lonicera japonica HOM05D005661 ORTHO05D007997 6.1e-49 198.0 172 61.6
CiPaw.06G177000 Carya illinoinensis HOM05D005661 ORTHO05D007997 3.0e-48 195.7 127 73.2
vmacro01624 Vaccinium macrocarpon HOM05D005661 ORTHO05D007997 9.8e-47 190.7 175 62.3
Sed0000786 Sechium edule HOM05D005661 ORTHO05D007997 1.7e-46 189.9 127 71.7
CDE04G2298 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 7.0e-45 184.5 174 56.3
CBR_g214 Chara braunii HOM05D005661 ORTHO05D007997 3.0e-40 169.1 127 62.2
Actinidia00142 Actinidia chinensis HOM05D005661 ORTHO05D007997 8.0e-33 144.4 95 70.5
Atru.chr6.139 Acer truncatum HOM05D005661 ORTHO05D007997 6.4e-30 134.8 92 69.6
AUR62030219 Chenopodium quinoa HOM05D005661 ORTHO05D007997 3.2e-29 132.5 148 51.4
HanXRQChr03g0069601 Helianthus annuus HOM05D005661 ORTHO05D007997 2.7e-28 129.4 88 68.2
SMO367G1054 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 2.3e-24 116.3 144 51.4
Hund15335 Selenicereus undatus HOM05D005661 ORTHO05D007997 3.1e-24 115.9 130 50.8
AagrBONN_evm.TU.Sc2ySwM_362.419 Anthoceros agrestis HOM05D005661 ORTHO05D007997 2.7e-20 102.8 66 72.7
FvH4_5g27493 Fragaria vesca HOM05D005661 ORTHO05D007997 1.2e-17 94.0 130 45.4
FAN08G3692 Fragaria x ananassa HOM05D005661 ORTHO05D208506 3.4e-15 85.9 137 42.3
VMungo1364G0001 Vigna mungo HOM05D005661 ORTHO05D005421 4.4e-15 85.5 63 66.7
Ca_29126_v3 Cicer arietinum L. HOM05D005661 ORTHO05D148461 4.9e-14 82.0 143 35.7
HanXRQChr14g0444001 Helianthus annuus HOM05D005661 ORTHO05D007997 4.9e-14 82.0 57 64.9
FAN08G1519 Fragaria x ananassa HOM05D005661 ORTHO05D210776 1.9e-13 80.1 99 45.5
Ca_21047_v3 Cicer arietinum L. HOM05D005661 ORTHO05D147477 3.2e-13 79.3 56 69.6
AagrBONN_evm.TU.Sc2ySwM_362.430 Anthoceros agrestis HOM05D005661 ORTHO05D007997 4.1e-13 79.0 96 44.8
arahy.Tifrunner.gnm1.ann1.H0NKK3 Arachis hypogaea HOM05D005661 ORTHO05D007997 1.6e-12 77.0 53 66.0
FvH4_5g27491 Fragaria vesca HOM05D005661 ORTHO05D046262 2.3e-11 73.2 108 44.4
Lj5A292T54 Lonicera japonica HOM05D005661 ORTHO05D007997 2.1e-09 66.6 40 70.0
CAN.G242.16 Capsicum annuum HOM05D005661 ORTHO05D007997 1.8e-08 63.5 41 63.4


User provided reference genes

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