Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0877300 Oryza sativa ssp. japonica HOM05D006009 ORTHO05D007389 0.0e+00 1261.9 721 100.0
MBI03_g05191_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 2.6e-194 682.9 727 55.3
Atru.chr6.240 Acer truncatum HOM05D006009 ORTHO05D007389 7.5e-194 681.4 730 54.2
QL02p103325 Quercus lobata HOM05D006009 ORTHO05D007389 1.6e-191 673.7 730 54.4
Cfa004445 Carpinus fangiana HOM05D006009 ORTHO05D007389 3.9e-190 669.1 731 53.5
Thecc.06G017900 Theobroma cacao HOM05D006009 ORTHO05D007389 1.9e-189 666.8 730 53.0
PSO017G1873 Papaver somniferum HOM05D006009 ORTHO05D007389 1.2e-188 664.1 732 53.1
TAR628G0644 Trochodendron aralioides HOM05D006009 ORTHO05D007389 4.7e-188 662.1 726 54.5
FvH4_5g27851 Fragaria vesca HOM05D006009 ORTHO05D007389 1.4e-187 660.6 730 53.4
Manes.10G106700 Manihot esculenta HOM05D006009 ORTHO05D007389 2.4e-184 649.8 730 53.2
Dinv29632 Davidia involucrata HOM05D006009 ORTHO05D007389 4.1e-184 649.0 729 52.9
Duzib160G0440 Durio zibethinus HOM05D006009 ORTHO05D007389 7.1e-184 648.3 731 52.3
Aqoxy6G00035 Aquilegia oxysepala HOM05D006009 ORTHO05D007389 9.2e-184 647.9 736 51.9
RcHm_v2.0_Chr7g0219751 Rosa chinensis HOM05D006009 ORTHO05D007389 7.8e-183 644.8 733 52.4
CsaV3_5G037180 Cucumis sativus L. HOM05D006009 ORTHO05D007389 1.7e-182 643.7 734 52.5
CiPaw.05G001600 Carya illinoinensis HOM05D006009 ORTHO05D007389 3.9e-182 642.5 729 52.3
CSS0016468 Camellia sinensis var. sinensis HOM05D006009 ORTHO05D007389 2.5e-181 639.8 731 52.7
Rhsim11G0117900 Rhododendron simsii HOM05D006009 ORTHO05D007389 5.6e-181 638.6 757 50.9
Actinidia00150 Actinidia chinensis HOM05D006009 ORTHO05D007389 1.6e-180 637.1 729 52.4
Haze_09985 Corylus avellana HOM05D006009 ORTHO05D007389 1.6e-180 637.1 818 47.6
Ca_13530_v3 Cicer arietinum L. HOM05D006009 ORTHO05D007389 3.6e-180 636.0 725 52.1
MELO3C022930.2 Cucumis melo HOM05D006009 ORTHO05D007389 1.4e-179 634.0 734 51.8
HanXRQChr10g0301411 Helianthus annuus HOM05D006009 ORTHO05D007389 1.4e-179 634.0 728 53.2
arahy.Tifrunner.gnm1.ann1.WHZ4K1 Arachis hypogaea HOM05D006009 ORTHO05D007389 1.2e-178 630.9 670 54.0
arahy.Tifrunner.gnm1.ann1.AUD1A6 Arachis hypogaea HOM05D006009 ORTHO05D007389 1.5e-178 630.6 728 51.4
Lsat_1_v5_gn_5_104280 Lactuca sativa HOM05D006009 ORTHO05D007389 2.9e-177 626.3 729 51.2
Nn5g27199 Nelumbo nucifera HOM05D006009 ORTHO05D007389 2.9e-177 626.3 725 54.5
ClCG11G000290 Citrullus lanatus HOM05D006009 ORTHO05D007389 1.1e-176 624.4 732 51.4
COL.COLO4_31132 Corchorus olitorius HOM05D006009 ORTHO05D007389 1.9e-176 623.6 705 51.8
THA.LOC104806651 Tarenaya hassleriana HOM05D006009 ORTHO05D007389 1.6e-175 620.5 734 51.0
Solyc01g103040.4 Solanum lycopersicum HOM05D006009 ORTHO05D007389 2.7e-175 619.8 730 51.2
TWI59G1011 Tripterygium wilfordii HOM05D006009 ORTHO05D007389 1.3e-174 617.5 694 52.9
MD08G1248100 Malus domestica HOM05D006009 ORTHO05D007389 3.0e-174 616.3 731 50.8
Cc02_g23590 Coffea canephora HOM05D006009 ORTHO05D007389 3.9e-174 615.9 734 51.0
Nitab4.5_0002261g0040 Nicotiana tabacum HOM05D006009 ORTHO05D007389 3.9e-174 615.9 732 50.4
Lalb_Chr12g0195841 Lupinus albus HOM05D006009 ORTHO05D007389 1.1e-173 614.4 726 51.0
Thhalv10012797m.g Eutrema salsugineum HOM05D006009 ORTHO05D007389 1.5e-173 614.0 743 49.3
SGA_v2.0_scaffold131G34411 Striga asiatica HOM05D006009 ORTHO05D007389 1.5e-173 614.0 733 51.0
Sabra03G0000300 Salix brachista HOM05D006009 ORTHO05D007389 2.5e-173 613.2 733 51.3
Lj4g0014586 Lotus japonicus HOM05D006009 ORTHO05D007389 3.3e-173 612.8 728 50.7
Psat4g001000 Pisum sativum HOM05D006009 ORTHO05D007389 4.3e-173 612.5 724 49.9
Eucgr.I02796 Eucalyptus grandis HOM05D006009 ORTHO05D007389 9.6e-173 611.3 725 51.6
Ciclev10000419m.g Citrus clementina HOM05D006009 ORTHO05D007389 1.2e-172 610.9 733 51.6
Gohir.D06G150100 Gossypium hirsutum HOM05D006009 ORTHO05D007389 1.2e-172 610.9 732 49.7
TPR.G5949 Trifolium pratense HOM05D006009 ORTHO05D007389 2.1e-172 610.1 724 50.3
BcaB08g35360 Brassica carinata HOM05D006009 ORTHO05D007389 3.6e-172 609.4 730 49.6
Potri.003G000900 Populus trichocarpa HOM05D006009 ORTHO05D007389 1.8e-171 607.1 733 51.0
CARHR258850 Cardamine hirsuta HOM05D006009 ORTHO05D007389 3.1e-171 606.3 732 49.9
Migut.B00722 Erythranthe guttata HOM05D006009 ORTHO05D007389 3.1e-171 606.3 733 51.4
Medtr4g134640 Medicago truncatula HOM05D006009 ORTHO05D007389 3.1e-171 606.3 724 49.6
Prupe.1G585300 Prunus persica HOM05D006009 ORTHO05D007389 3.1e-171 606.3 672 54.3
ECA234G2369 Erigeron canadensis HOM05D006009 ORTHO05D007389 5.2e-171 605.5 719 51.2
PGR142G3497 Punica granatum HOM05D006009 ORTHO05D007389 4.4e-170 602.4 735 49.3
Sopen01g045450 Solanum pennellii HOM05D006009 ORTHO05D007389 4.4e-170 602.4 730 50.4
Glyma.17G001700 Glycine max HOM05D006009 ORTHO05D007389 7.6e-170 601.7 727 50.2
AL8G23820 Arabidopsis lyrata HOM05D006009 ORTHO05D007389 9.9e-170 601.3 733 49.4
MD15G1442900 Malus domestica HOM05D006009 ORTHO05D007389 1.3e-169 600.9 724 49.6
HPP92_003614 Vanilla planifolia HOM05D006009 ORTHO05D007389 1.3e-169 600.9 728 52.1
Sc03g0005770 Simmondsia chinensis HOM05D006009 ORTHO05D007389 1.7e-169 600.5 728 49.2
MSTRG.16468 Avicennia marina HOM05D006009 ORTHO05D007389 2.2e-169 600.1 705 51.3
Nitab4.5_0005110g0010 Nicotiana tabacum HOM05D006009 ORTHO05D007389 1.1e-168 597.8 750 48.7
BraSC37t46134Z Brassica rapa HOM05D006009 ORTHO05D007389 1.9e-168 597.0 732 49.5
Sp6g11340 Schrenkiella parvula HOM05D006009 ORTHO05D007389 5.4e-168 595.5 729 49.1
AT5G49880 Arabidopsis thaliana HOM05D006009 ORTHO05D007389 1.2e-167 594.3 731 49.0
Peaxi162Scf00011g01924 Petunia axillaris HOM05D006009 ORTHO05D007389 1.6e-167 594.0 737 50.3
Hma1.2p1_0052F.1_g030000 Hydrangea macrophylla HOM05D006009 ORTHO05D007389 4.6e-167 592.4 712 50.8
Gorai.010G175200 Gossypium raimondii HOM05D006009 ORTHO05D007389 6.0e-167 592.0 733 49.0
PSO170G2218 Papaver somniferum HOM05D006009 ORTHO05D007389 1.0e-166 591.3 702 50.0
A10p08680 Brassica napus HOM05D006009 ORTHO05D007389 3.3e-165 586.3 732 48.9
Phvul.003G076200 Phaseolus vulgaris HOM05D006009 ORTHO05D007389 3.3e-165 586.3 696 50.4
ATR1089G153 Amborella trichopoda HOM05D006009 ORTHO05D007389 1.6e-164 583.9 733 50.8
Carub.0008s0974 Capsella rubella HOM05D006009 ORTHO05D007389 1.6e-164 583.9 734 48.2
BcaC04g20834 Brassica carinata HOM05D006009 ORTHO05D007389 3.4e-162 576.2 730 48.2
vmacro01680 Vaccinium macrocarpon HOM05D006009 ORTHO05D007389 3.2e-160 569.7 818 45.0
C09p38660 Brassica napus HOM05D006009 ORTHO05D007389 1.2e-159 567.8 732 48.1
BolC9t56722H Brassica oleracea HOM05D006009 ORTHO05D007389 1.2e-159 567.8 732 48.1
Ah.03g136790 Amaranthus hybridus HOM05D006009 ORTHO05D007389 1.5e-157 560.8 724 48.2
FAN08G0569 Fragaria x ananassa HOM05D006009 ORTHO05D007389 2.8e-156 556.6 801 46.1
Zm00001eb145920 Zea mays HOM05D006009 ORTHO05D007389 1.8e-155 553.9 444 72.1
unitig_8.g4550 Utricularia gibba HOM05D006009 ORTHO05D007389 5.3e-155 552.4 666 48.8
Lj5C283T7 Lonicera japonica HOM05D006009 ORTHO05D007389 7.6e-154 548.5 719 48.7
Glyma.07G272700 Glycine max HOM05D006009 ORTHO05D007389 4.9e-153 545.8 701 48.4
AUR62042641 Chenopodium quinoa HOM05D006009 ORTHO05D007389 6.4e-153 545.4 748 45.5
Potri.004G228900 Populus trichocarpa HOM05D006009 ORTHO05D007389 1.4e-152 544.3 729 47.5
Aa31sc62G20 Aethionema arabicum HOM05D006009 ORTHO05D007389 4.0e-147 526.2 729 46.0
DCAR_001725 Daucus carota HOM05D006009 ORTHO05D007389 9.0e-147 525.0 701 45.2
AUR62032470 Chenopodium quinoa HOM05D006009 ORTHO05D007389 8.7e-142 508.4 728 44.1
FAN04G2183 Fragaria x ananassa HOM05D006009 ORTHO05D007389 4.3e-141 506.1 674 48.1
EL10Ac6g13997 Beta vulgaris HOM05D006009 ORTHO05D007389 1.8e-139 500.7 780 42.6
Gohir.A06G144400 Gossypium hirsutum HOM05D006009 ORTHO05D007389 3.1e-139 500.0 732 44.7
CDE05G2940 Ceratophyllum demersum HOM05D006009 ORTHO05D007389 1.9e-136 490.7 573 51.1
Oeu043610.2 Olea europaea HOM05D006009 ORTHO05D007389 1.8e-131 474.2 672 45.4
CANSAT01G0444 Cannabis sativa HOM05D006009 ORTHO05D007389 1.2e-109 401.7 603 42.8
CAN.G855.52 Capsicum annuum HOM05D006009 ORTHO05D007389 1.9e-104 384.4 355 60.0
Cpa.g.sc173.18 Carica papaya HOM05D006009 ORTHO05D007389 2.7e-103 380.6 372 56.5
Sed0013076 Sechium edule HOM05D006009 ORTHO05D007389 7.5e-93 345.9 579 42.8
GSVIVG01023147001 Vitis vinifera HOM05D006009 ORTHO05D007389 4.1e-91 340.1 303 61.1
Oeu028479.1 Olea europaea HOM05D006009 ORTHO05D007389 8.0e-87 325.9 261 64.8
FAN18G4220 Fragaria x ananassa HOM05D006009 ORTHO05D007389 1.4e-86 325.1 560 40.5
Manes.10G107000 Manihot esculenta HOM05D006009 ORTHO05D007389 4.0e-86 323.6 434 47.9
Pp3c17_20400 Physcomitrium patens HOM05D006009 ORTHO05D007389 1.2e-82 312.0 690 33.8
GSVIVG01023148001 Vitis vinifera HOM05D006009 ORTHO05D007389 8.6e-81 305.8 431 45.7
AagrBONN_evm.TU.Sc2ySwM_228.1218 Anthoceros agrestis HOM05D006009 ORTHO05D007389 1.1e-70 272.3 734 31.6
Mapoly0034s0031 Marchantia polymorpha HOM05D006009 ORTHO05D007389 1.5e-69 268.5 665 30.5
ECA234G2367 Erigeron canadensis HOM05D000005 ORTHO05D000012 2.3e-65 254.6 343 51.0
CBR_g38734 Chara braunii HOM05D006009 ORTHO05D007389 3.3e-64 250.8 718 29.1
CAN.G855.51 Capsicum annuum HOM05D006009 ORTHO05D007389 1.5e-61 241.9 377 42.7
SMO343G0014 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 3.5e-58 230.7 763 28.0
Cpa.g.sc173.20 Carica papaya HOM05D006009 ORTHO05D007389 1.3e-49 202.2 381 39.1
Oeu028480.1 Olea europaea HOM05D006009 ORTHO05D007389 1.6e-47 195.3 275 46.9
Sabra01G0173900 Salix brachista HOM05D006009 ORTHO05D007389 1.8e-46 191.8 534 33.3
SHI05061 Sapria himalayana HOM05D000030 ORTHO05D000009 7.6e-45 186.4 422 36.3
SEGI_19376 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 1.9e-24 118.6 109 56.0
SEGI_34522 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 9.0e-22 109.8 82 59.8
Eucgr.D02407 Eucalyptus grandis HOM05D006009 ORTHO05D007389 1.7e-20 105.5 131 47.3
PRCOL_00003389 Prasinoderma coloniale HOM05D006009 ORTHO05D007389 3.9e-17 94.4 507 23.5
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 7.4e-16 90.1 56 83.9
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 9.7e-16 89.7 107 47.7
SEGI_26370 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 6.3e-15 87.0 130 40.0
Zm00001eb351220 Zea mays HOM05D006009 ORTHO05D007389 1.2e-13 82.8 61 72.1
MCO13G251 Micromonas commoda HOM05D006009 ORTHO05D007389 6.5e-12 77.0 114 35.1
MBI18_g20174_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 1.4e-11 75.9 69 55.1
SMO343G0089 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 2.5e-11 75.1 237 32.1
QL08p014094 Quercus lobata HOM05D006009 ORTHO05D007389 3.2e-11 74.7 99 42.4
SEGI_01187 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 2.1e-10 72.0 143 36.4
Oeu028483.1 Olea europaea HOM05D006009 ORTHO05D007389 1.0e-09 69.7 93 46.2
Hund15371 Selenicereus undatus HOM05D006009 ORTHO05D007389 6.7e-09 67.0 162 37.7
MBI06_g11892_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D004199 3.3e-08 64.7 100 43.0
RhsimUnG0219700 Rhododendron simsii HOM05D006009 ORTHO05D007389 6.9e-06 57.0 41 68.3


User provided reference genes

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