Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 1.9e-198 695.7 351 100.0
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 2.7e-152 542.3 345 77.4
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 2.9e-135 485.7 321 73.5
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 8.0e-133 477.6 330 70.6
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 1.0e-132 477.2 329 70.8
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 1.4e-132 476.9 337 70.0
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 1.4e-132 476.9 350 68.3
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 1.8e-132 476.5 335 69.3
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 4.0e-132 475.3 334 71.0
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 4.0e-132 475.3 321 70.7
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 8.9e-132 474.2 321 72.6
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 8.9e-132 474.2 319 71.8
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 1.2e-131 473.8 321 71.0
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 1.5e-131 473.4 321 71.3
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 1.5e-131 473.4 334 69.5
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 3.4e-131 472.2 333 69.4
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 9.8e-131 470.7 333 69.4
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.3e-130 470.3 332 69.3
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 1.7e-130 469.9 333 69.4
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 2.9e-130 469.2 334 69.5
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 2.9e-130 469.2 332 69.3
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 3.7e-130 468.8 333 68.5
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 3.7e-130 468.8 330 70.0
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 4.9e-130 468.4 352 67.3
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 4.9e-130 468.4 326 70.6
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 6.4e-130 468.0 320 70.3
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 8.3e-130 467.6 334 68.0
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 1.1e-129 467.2 348 67.5
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.4e-129 466.8 324 70.1
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 1.4e-129 466.8 328 69.5
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 1.9e-129 466.5 324 70.4
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.2e-129 465.7 333 68.2
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 3.2e-129 465.7 334 67.4
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 4.1e-129 465.3 349 67.9
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 4.1e-129 465.3 321 71.0
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 5.4e-129 464.9 328 69.2
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 7.0e-129 464.5 350 69.1
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 9.2e-129 464.2 335 67.8
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 1.2e-128 463.8 349 66.8
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 2.0e-128 463.0 323 68.7
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 2.0e-128 463.0 350 66.9
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 2.0e-128 463.0 332 69.0
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 2.7e-128 462.6 316 72.5
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 2.7e-128 462.6 331 68.6
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 3.5e-128 462.2 349 67.6
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 4.6e-128 461.8 346 66.8
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 1.0e-127 460.7 331 68.9
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 1.3e-127 460.3 333 67.6
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 1.7e-127 459.9 334 67.7
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 2.3e-127 459.5 332 67.5
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 3.0e-127 459.1 349 66.5
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 3.9e-127 458.8 332 68.1
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 8.6e-127 457.6 337 67.7
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 8.6e-127 457.6 325 69.2
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 1.9e-126 456.4 331 68.0
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 1.9e-126 456.4 347 66.0
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 2.5e-126 456.1 331 68.0
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 2.5e-126 456.1 350 65.1
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 2.5e-126 456.1 350 65.1
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 2.5e-126 456.1 322 68.9
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 2.5e-126 456.1 335 67.2
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 4.3e-126 455.3 332 67.8
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 5.6e-126 454.9 350 64.9
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 7.3e-126 454.5 350 64.9
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 7.3e-126 454.5 350 66.0
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.1e-125 453.0 337 67.1
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 2.8e-125 452.6 338 66.9
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 8.0e-125 451.1 367 63.2
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 1.8e-124 449.9 347 65.1
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 8.9e-124 447.6 339 66.4
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 1.2e-123 447.2 352 64.8
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 1.2e-123 447.2 350 66.9
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 1.2e-123 447.2 327 68.5
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 1.5e-123 446.8 323 67.8
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 2.0e-123 446.4 347 64.6
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 2.0e-123 446.4 387 60.7
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 2.6e-123 446.0 346 64.5
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 3.4e-123 445.7 331 67.7
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 3.4e-123 445.7 346 64.5
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 7.5e-123 444.5 337 66.5
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 1.3e-122 443.7 343 64.7
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 1.7e-122 443.4 369 60.2
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 1.7e-122 443.4 322 68.9
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 6.4e-122 441.4 366 61.2
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 2.4e-121 439.5 325 65.8
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 1.2e-120 437.2 349 65.6
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 1.1e-118 430.6 334 64.7
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 1.9e-118 429.9 307 68.4
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 2.5e-118 429.5 325 65.2
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 2.5e-118 429.5 325 65.2
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 3.3e-118 429.1 335 63.9
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 7.3e-118 427.9 401 56.9
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 8.1e-117 424.5 336 65.8
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 2.3e-116 422.9 350 63.1
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 2.0e-115 419.9 323 63.5
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 6.4e-114 414.8 349 61.3
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 6.0e-112 408.3 323 63.8
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 6.2e-109 398.3 329 60.2
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 1.2e-104 384.0 251 74.1
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 1.6e-104 383.6 251 74.5
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 3.3e-102 375.9 250 74.4
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 3.3e-102 375.9 251 70.9
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 1.2e-99 367.5 246 70.7
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 1.4e-92 344.0 245 66.9
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 3.8e-90 335.9 322 55.9
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.1e-89 334.3 294 59.2
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 5.4e-89 332.0 318 55.0
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 4.6e-88 328.9 326 54.0
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 4.6e-88 328.9 320 53.1
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 9.6e-86 321.2 371 49.1
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 1.3e-82 310.8 199 75.9
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 6.7e-71 271.9 234 56.4
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 2.2e-66 256.9 350 41.4
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 7.9e-64 248.4 265 48.7
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 2.0e-62 243.8 165 69.7
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 2.5e-57 226.9 215 55.8
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 7.9e-56 221.9 369 39.8
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 1.4e-52 211.1 141 74.5
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 3.1e-52 209.9 175 61.7
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 1.0e-50 204.9 137 71.5
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 1.2e-48 198.0 130 73.1
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-33 147.9 165 46.7
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.0e-30 137.5 112 58.9
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 5.7e-30 136.0 112 58.0
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 9.8e-30 135.2 112 57.1
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 2.0e-27 127.5 101 59.4
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 2.7e-27 127.1 104 60.6
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.7e-27 127.1 101 59.4
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.7e-27 127.1 101 59.4
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 2.7e-27 127.1 111 58.6
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.9e-27 125.9 119 53.8
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 4.7e-24 116.3 182 42.3
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 2.3e-23 114.0 77 72.7
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 2.4e-20 104.0 73 65.8
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 3.5e-19 100.1 77 63.6
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 4.7e-16 89.7 61 68.9
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 4.9e-13 79.7 66 60.6
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 1.1e-12 78.6 95 45.3
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 5.4e-12 76.3 180 34.4
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 8.6e-10 68.9 41 70.7
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 1.5e-09 68.2 66 54.5
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 1.9e-09 67.8 92 47.8
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 1.6e-08 64.7 61 50.8
DCAR_025440 Daucus carota HOM05D000874 ORTHO05D001049 3.6e-08 63.5 172 28.5
Lj1g0025553 Lotus japonicus HOM05D000874 ORTHO05D001049 1.8e-07 61.2 239 27.2
CsaV3_4G010290 Cucumis sativus L. HOM05D000874 ORTHO05D001049 2.3e-07 60.8 193 31.1
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 5.2e-07 59.7 166 28.3
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 6.8e-07 59.3 180 28.9
Aqoxy3G03673 Aquilegia oxysepala HOM05D000874 ORTHO05D001049 1.2e-06 58.5 180 25.6
Oeu025532.3 Olea europaea HOM05D000874 ORTHO05D001049 1.5e-06 58.2 163 28.2
TWI09G0140 Tripterygium wilfordii HOM05D000874 ORTHO05D001049 1.5e-06 58.2 172 28.5
unitig_899.g15103 Utricularia gibba HOM05D000874 ORTHO05D001049 2.6e-06 57.4 184 27.2
Carub.0005s0832 Capsella rubella HOM05D000874 ORTHO05D001049 3.4e-06 57.0 206 26.7
EL10Ac5g11156 Beta vulgaris HOM05D000874 ORTHO05D001049 5.8e-06 56.2 186 26.9


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