Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0866600 Oryza sativa ssp. japonica HOM05D006928 ORTHO05D008618 1.3e-32 142.5 74 100.0
Zm00001eb146740 Zea mays HOM05D006928 ORTHO05D008618 2.5e-28 128.3 76 94.7
CDE04G1901 Ceratophyllum demersum HOM05D006928 ORTHO05D008618 1.3e-19 99.4 64 78.1
CDE12G0365 Ceratophyllum demersum HOM05D006928 ORTHO05D008618 2.8e-19 98.2 63 77.8
PSO541G1601 Papaver somniferum HOM05D006928 ORTHO05D008618 1.1e-18 96.3 66 75.8
THA.LOC104799431 Tarenaya hassleriana HOM05D006928 ORTHO05D008618 1.1e-18 96.3 65 72.3
CSS0007569 Camellia sinensis var. sinensis HOM05D006928 ORTHO05D008618 2.4e-18 95.1 63 77.8
CSS0018620 Camellia sinensis var. sinensis HOM05D006928 ORTHO05D008618 2.4e-18 95.1 63 77.8
TAR376G0498 Trochodendron aralioides HOM05D006928 ORTHO05D008618 4.0e-18 94.4 63 76.2
Haze_25192 Corylus avellana HOM05D006928 ORTHO05D008618 9.0e-18 93.2 64 75.0
Haze_25196 Corylus avellana HOM05D006928 ORTHO05D008618 9.0e-18 93.2 64 75.0
Haze_25197 Corylus avellana HOM05D006928 ORTHO05D008618 9.0e-18 93.2 64 75.0
Cfa002868 Carpinus fangiana HOM05D006928 ORTHO05D008618 1.2e-17 92.8 64 73.4
CiPaw.04G083900 Carya illinoinensis HOM05D006928 ORTHO05D008618 1.2e-17 92.8 64 73.4
Prupe.6G162900 Prunus persica HOM05D006928 ORTHO05D008618 1.2e-17 92.8 71 71.8
Thhalv10015138m.g Eutrema salsugineum HOM05D006928 ORTHO05D008618 1.5e-17 92.4 65 72.3
PSO675G6866 Papaver somniferum HOM05D006928 ORTHO05D008618 1.5e-17 92.4 66 72.7
TAR381G0700 Trochodendron aralioides HOM05D006928 ORTHO05D008618 1.5e-17 92.4 63 73.0
Aa31LG1G17250 Aethionema arabicum HOM05D006928 ORTHO05D008618 2.0e-17 92.0 73 65.8
Migut.H01113 Erythranthe guttata HOM05D006928 ORTHO05D008618 2.0e-17 92.0 73 68.5
Potri.001G309200 Populus trichocarpa HOM05D006928 ORTHO05D008618 2.0e-17 92.0 63 73.0
QL06p051863 Quercus lobata HOM05D006928 ORTHO05D008618 2.0e-17 92.0 64 73.4
Actinidia17615 Actinidia chinensis HOM05D006928 ORTHO05D008618 2.6e-17 91.7 64 73.4
Aqoxy3G02632 Aquilegia oxysepala HOM05D006928 ORTHO05D008618 2.6e-17 91.7 69 68.1
Sc16g0003960 Simmondsia chinensis HOM05D006928 ORTHO05D008618 2.6e-17 91.7 57 78.9
THA.LOC104818466 Tarenaya hassleriana HOM05D006928 ORTHO05D008618 2.6e-17 91.7 65 73.8
Eucgr.I00245 Eucalyptus grandis HOM05D006928 ORTHO05D008618 3.4e-17 91.3 69 66.7
MBI09_g18622_MAGBIO Magnolia biondii HOM05D006928 ORTHO05D008618 3.4e-17 91.3 63 73.0
MBI09_g20115_MAGBIO Magnolia biondii HOM05D006928 ORTHO05D008618 3.4e-17 91.3 63 73.0
Sabra16G0195000 Salix brachista HOM05D006928 ORTHO05D008618 3.4e-17 91.3 63 73.0
BraA09t36529Z Brassica rapa HOM05D006928 ORTHO05D008618 4.5e-17 90.9 63 71.4
BcaC04g23298 Brassica carinata HOM05D006928 ORTHO05D008618 5.8e-17 90.5 69 66.7
CsaV3_2G018080 Cucumis sativus L. HOM05D006928 ORTHO05D008618 5.8e-17 90.5 63 71.4
Dinv09934 Davidia involucrata HOM05D006928 ORTHO05D008618 5.8e-17 90.5 63 73.0
Nn1g06098 Nelumbo nucifera HOM05D006928 ORTHO05D008618 5.8e-17 90.5 63 69.8
PGR119G2472 Punica granatum HOM05D006928 ORTHO05D008618 5.8e-17 90.5 71 69.0
Atru.chr4.541 Acer truncatum HOM05D006928 ORTHO05D008618 7.6e-17 90.1 69 65.2
Carub.0006s0825 Capsella rubella HOM05D006928 ORTHO05D008618 7.6e-17 90.1 65 72.3
RcHm_v2.0_Chr2g0119151 Rosa chinensis HOM05D006928 ORTHO05D008618 7.6e-17 90.1 68 69.1
Sp2g27750 Schrenkiella parvula HOM05D006928 ORTHO05D008618 7.6e-17 90.1 70 65.7
Sed0020530 Sechium edule HOM05D006928 ORTHO05D008618 7.6e-17 90.1 63 71.4
Hund03424 Selenicereus undatus HOM05D006928 ORTHO05D008618 7.6e-17 90.1 66 71.2
ClCG02G000690 Citrullus lanatus HOM05D006928 ORTHO05D008618 9.9e-17 89.7 63 69.8
MD15G1343100 Malus domestica HOM05D006928 ORTHO05D008618 9.9e-17 89.7 68 67.6
Sp6g33580 Schrenkiella parvula HOM05D006928 ORTHO05D008618 9.9e-17 89.7 65 70.8
Actinidia26282 Actinidia chinensis HOM05D006928 ORTHO05D008618 1.3e-16 89.4 63 73.0
BcaB04g19985 Brassica carinata HOM05D006928 ORTHO05D008618 1.3e-16 89.4 62 71.0
A10p27630 Brassica napus HOM05D006928 ORTHO05D008618 1.3e-16 89.4 66 68.2
BolC9t53907H Brassica oleracea HOM05D006928 ORTHO05D008618 1.3e-16 89.4 69 65.2
CANSAT01G1375 Cannabis sativa HOM05D006928 ORTHO05D008618 1.3e-16 89.4 68 67.6
COL.COLO4_22417 Corchorus olitorius HOM05D006928 ORTHO05D008618 1.3e-16 89.4 69 68.1
FvH4_1g23590 Fragaria vesca HOM05D006928 ORTHO05D008618 1.3e-16 89.4 68 69.1
FAN19G2906 Fragaria x ananassa HOM05D006928 ORTHO05D008618 1.3e-16 89.4 68 69.1
FAN23G1796 Fragaria x ananassa HOM05D006928 ORTHO05D008618 1.3e-16 89.4 68 69.1
FAN28G2803 Fragaria x ananassa HOM05D006928 ORTHO05D008618 1.3e-16 89.4 68 69.1
Rhsim08G0003500 Rhododendron simsii HOM05D002612 ORTHO05D008618 1.3e-16 89.4 63 71.4
HPP92_027450 Vanilla planifolia HOM05D006928 ORTHO05D008618 1.3e-16 89.4 60 70.0
AL6G20240 Arabidopsis lyrata HOM05D006928 ORTHO05D008618 1.7e-16 89.0 73 67.1
BcaB08g37169 Brassica carinata HOM05D006928 ORTHO05D008618 1.7e-16 89.0 65 69.2
C09p67690 Brassica napus HOM05D006928 ORTHO05D008618 1.7e-16 89.0 65 69.2
BolC9t59531H Brassica oleracea HOM05D006928 ORTHO05D008618 1.7e-16 89.0 65 69.2
BraA10t44815Z Brassica rapa HOM05D006928 ORTHO05D008618 1.7e-16 89.0 65 69.2
Glyma.08G146400 Glycine max HOM05D006928 ORTHO05D008618 2.2e-16 88.6 63 69.8
Manes.12G150300 Manihot esculenta HOM05D006928 ORTHO05D008618 2.2e-16 88.6 63 69.8
Medtr8g092690 Medicago truncatula HOM05D006928 ORTHO05D008618 2.2e-16 88.6 63 68.3
Phvul.002G269100 Phaseolus vulgaris HOM05D006928 ORTHO05D008618 2.2e-16 88.6 63 69.8
TPR.G2179 Trifolium pratense HOM05D006928 ORTHO05D008618 2.2e-16 88.6 63 68.3
Gohir.A02G138100 Gossypium hirsutum HOM05D006928 ORTHO05D008618 2.9e-16 88.2 68 67.6
Gohir.D03G048800 Gossypium hirsutum HOM05D006928 ORTHO05D008618 2.9e-16 88.2 68 67.6
Gorai.003G050100 Gossypium raimondii HOM05D006928 ORTHO05D008618 2.9e-16 88.2 68 67.6
Lj4g0006915 Lotus japonicus HOM05D006928 ORTHO05D008618 2.9e-16 88.2 63 68.3
Lalb_Chr12g0203321 Lupinus albus HOM05D006928 ORTHO05D008618 2.9e-16 88.2 63 69.8
Thecc.01G120800 Theobroma cacao HOM05D006928 ORTHO05D008618 2.9e-16 88.2 63 71.4
GSVIVG01026587001 Vitis vinifera HOM05D006928 ORTHO05D008618 2.9e-16 88.2 73 67.1
CARHR203570 Cardamine hirsuta HOM05D006928 ORTHO05D008618 3.8e-16 87.8 74 67.6
Thhalv10005190m.g Eutrema salsugineum HOM05D006928 ORTHO05D008618 3.8e-16 87.8 70 64.3
Psat7g048720 Pisum sativum HOM05D006928 ORTHO05D008618 3.8e-16 87.8 63 68.3
AagrBONN_evm.TU.Sc2ySwM_344.3776 Anthoceros agrestis HOM05D006928 ORTHO05D008618 4.9e-16 87.4 61 70.5
AL8G42110 Arabidopsis lyrata HOM05D006928 ORTHO05D008618 4.9e-16 87.4 66 68.2
AT5G09830 Arabidopsis thaliana HOM05D006928 ORTHO05D008618 4.9e-16 87.4 73 64.4
Ciclev10026852m.g Citrus clementina HOM05D006928 ORTHO05D008618 8.4e-16 86.7 66 66.7
DCAR_027258 Daucus carota HOM05D006928 ORTHO05D008618 8.4e-16 86.7 57 71.9
Glyma.05G188300 Glycine max HOM05D006928 ORTHO05D008618 8.4e-16 86.7 63 68.3
HanXRQChr15g0471661 Helianthus annuus HOM05D006928 ORTHO05D008618 8.4e-16 86.7 63 68.3
Ah.03g146570 Amaranthus hybridus HOM05D006928 ORTHO05D008618 1.1e-15 86.3 69 65.2
EL10Ac6g15253 Beta vulgaris HOM05D006928 ORTHO05D008618 1.1e-15 86.3 69 65.2
SGA_v2.0_scaffold137G35109 Striga asiatica HOM05D006928 ORTHO05D008618 1.1e-15 86.3 61 68.9
CARHR278670 Cardamine hirsuta HOM05D006928 ORTHO05D008618 1.4e-15 85.9 66 65.2
AUR62003624 Chenopodium quinoa HOM05D006928 ORTHO05D008618 1.4e-15 85.9 69 63.8
Duzib187G1761 Durio zibethinus HOM05D006928 ORTHO05D008618 1.4e-15 85.9 69 65.2
Lsat_1_v5_gn_2_66720 Lactuca sativa HOM05D006928 ORTHO05D008618 1.4e-15 85.9 70 62.9
Pp3c4_15580 Physcomitrium patens HOM05D006928 ORTHO05D008618 1.4e-15 85.9 72 63.9
SalBow1G8150 Salvia bowleyana HOM05D006928 ORTHO05D008618 1.4e-15 85.9 61 70.5
MSTRG.2691 Avicennia marina HOM05D006928 ORTHO05D008618 1.9e-15 85.5 61 70.5
AUR62017933 Chenopodium quinoa HOM05D006928 ORTHO05D008618 1.9e-15 85.5 72 63.9
Cc00_g00790 Coffea canephora HOM05D006928 ORTHO05D008618 1.9e-15 85.5 69 62.3
Cc07_g17360 Coffea canephora HOM05D006928 ORTHO05D008618 1.9e-15 85.5 69 62.3
Duzib264G0933 Durio zibethinus HOM05D006928 ORTHO05D008618 1.9e-15 85.5 73 64.4
SMO351G0462 Selaginella moellendorffii HOM05D006928 ORTHO05D008618 1.9e-15 85.5 74 62.2
ECA238G4197 Erigeron canadensis HOM05D006928 ORTHO05D008618 2.4e-15 85.1 57 71.9
Carub.0008s2549 Capsella rubella HOM05D006928 ORTHO05D008618 5.4e-15 84.0 63 65.1
Peaxi162Scf00025g02217 Petunia axillaris HOM05D006928 ORTHO05D008618 5.4e-15 84.0 69 63.8
Cpa.g.sc1003.1 Carica papaya HOM05D006928 ORTHO05D008618 7.1e-15 83.6 71 63.4
TWI75G0630 Tripterygium wilfordii HOM05D006928 ORTHO05D008618 7.1e-15 83.6 68 63.2
unitig_0.g37 Utricularia gibba HOM05D006928 ORTHO05D008618 7.1e-15 83.6 63 66.7
Solyc11g005360.2 Solanum lycopersicum HOM05D006928 ORTHO05D008618 1.2e-14 82.8 72 63.9
Sopen11g001370 Solanum pennellii HOM05D006928 ORTHO05D008618 1.2e-14 82.8 72 63.9
Nitab4.5_0002064g0030 Nicotiana tabacum HOM05D006928 ORTHO05D008618 1.6e-14 82.4 69 62.3
Nitab4.5_0010284g0020 Nicotiana tabacum HOM05D006928 ORTHO05D008618 2.1e-14 82.0 69 62.3
Cre03.g164550 Chlamydomonas reinhardtii HOM05D006928 ORTHO05D008618 4.6e-14 80.9 66 62.1
Mapoly0023s0156 Marchantia polymorpha HOM05D006928 ORTHO05D008618 1.3e-13 79.3 61 60.7
CAN.G249.11 Capsicum annuum HOM05D006928 ORTHO05D008618 1.8e-13 79.0 69 60.9
C09p09990 Brassica napus HOM05D006928 ORTHO05D008618 3.0e-13 78.2 62 62.9
CBR_g19927 Chara braunii HOM05D006928 ORTHO05D008618 8.1e-11 70.1 58 58.6
SEGI_33222 Sequoiadendron giganteum HOM05D006928 ORTHO05D008618 1.2e-09 66.2 54 61.1
BcaB08g37178 Brassica carinata HOM05D006928 ORTHO05D008618 1.7e-08 62.4 65 53.8


User provided reference genes

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