Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0865100 Oryza sativa ssp. japonica HOM05D006018 ORTHO05D007545 3.9e-102 374.8 187 100.0
Zm00001eb146880 Zea mays HOM05D006018 ORTHO05D007545 5.1e-78 294.7 160 91.2
Migut.F00847 Erythranthe guttata HOM05D006018 ORTHO05D007545 4.7e-55 218.4 156 65.4
SalBow3G1532 Salvia bowleyana HOM05D006018 ORTHO05D007545 3.0e-54 215.7 157 62.4
MD07G1062200 Malus domestica HOM05D006018 ORTHO05D007545 6.8e-54 214.5 163 66.3
TWI38G2380 Tripterygium wilfordii HOM05D006018 ORTHO05D007545 3.4e-53 212.2 158 63.9
COL.COLO4_07822 Corchorus olitorius HOM05D006018 ORTHO05D007545 4.4e-53 211.8 160 65.0
TAR623G0250 Trochodendron aralioides HOM05D006018 ORTHO05D007545 9.8e-53 210.7 158 62.7
MSTRG.9035 Avicennia marina HOM05D006018 ORTHO05D007545 1.3e-52 210.3 158 62.0
PSO384G0865 Papaver somniferum HOM05D006018 ORTHO05D007545 1.3e-52 210.3 156 62.2
CDE02G2990 Ceratophyllum demersum HOM05D006018 ORTHO05D007545 2.2e-52 209.5 156 64.7
Dinv08587 Davidia involucrata HOM05D006018 ORTHO05D007545 2.2e-52 209.5 158 61.4
HPP92_027461 Vanilla planifolia HOM05D006018 ORTHO05D007545 2.2e-52 209.5 160 61.9
PSO339G6589 Papaver somniferum HOM05D006018 ORTHO05D007545 2.8e-52 209.1 156 61.5
Rhsim09G0141100 Rhododendron simsii HOM05D006018 ORTHO05D007545 8.3e-52 207.6 158 61.4
Aqoxy1G00667 Aquilegia oxysepala HOM05D006018 ORTHO05D007545 1.4e-51 206.8 162 61.7
ECA238G1473 Erigeron canadensis HOM05D006018 ORTHO05D007545 1.4e-51 206.8 158 60.8
THA.LOC104823771 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 3.1e-51 205.7 159 62.3
ATR0772G096 Amborella trichopoda HOM05D006018 ORTHO05D007545 4.1e-51 205.3 161 62.7
AT2G26230 Arabidopsis thaliana HOM05D006018 ORTHO05D007545 7.0e-51 204.5 159 64.2
Nn6g34699 Nelumbo nucifera HOM05D006018 ORTHO05D007545 7.0e-51 204.5 158 60.8
FvH4_7g03231 Fragaria vesca HOM05D006018 ORTHO05D007545 9.1e-51 204.1 156 62.8
FAN10G2047 Fragaria x ananassa HOM05D006018 ORTHO05D007545 9.1e-51 204.1 156 62.8
Gorai.012G019800 Gossypium raimondii HOM05D006018 ORTHO05D007545 1.2e-50 203.8 163 62.0
Manes.10G059900 Manihot esculenta HOM05D006018 ORTHO05D007545 1.2e-50 203.8 158 61.4
CARHR103400 Cardamine hirsuta HOM05D006018 ORTHO05D007545 1.6e-50 203.4 159 62.9
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 1.6e-50 203.4 159 61.0
Gohir.D04G017100 Gossypium hirsutum HOM05D006018 ORTHO05D007545 1.6e-50 203.4 163 61.3
Lsat_1_v5_gn_2_105841 Lactuca sativa HOM05D006018 ORTHO05D007545 1.6e-50 203.4 158 58.9
VMungo0720G2948 Vigna mungo HOM05D006018 ORTHO05D007545 1.6e-50 203.4 160 58.8
GSVIVG01034634001 Vitis vinifera HOM05D006018 ORTHO05D007545 1.6e-50 203.4 158 61.4
Thhalv10021194m.g Eutrema salsugineum HOM05D006018 ORTHO05D007545 2.0e-50 203.0 159 62.9
HanXRQChr02g0053551 Helianthus annuus HOM05D006018 ORTHO05D007545 2.0e-50 203.0 163 61.3
Aa31LG2G1810 Aethionema arabicum HOM05D006018 ORTHO05D007545 2.7e-50 202.6 156 62.8
BolC7t41872H Brassica oleracea HOM05D006018 ORTHO05D007545 2.7e-50 202.6 159 61.6
Carub.0002s0907 Capsella rubella HOM05D006018 ORTHO05D007545 2.7e-50 202.6 159 63.5
MELO3C012335.2 Cucumis melo HOM05D006018 ORTHO05D007545 2.7e-50 202.6 156 63.5
DCAR_004552 Daucus carota HOM05D006018 ORTHO05D007545 2.7e-50 202.6 158 62.0
Lj6g0008960 Lotus japonicus HOM05D006018 ORTHO05D007545 2.7e-50 202.6 155 62.6
Ca_12272_v3 Cicer arietinum L. HOM05D006018 ORTHO05D007545 3.5e-50 202.2 155 62.6
Gohir.A05G398800 Gossypium hirsutum HOM05D006018 ORTHO05D007545 3.5e-50 202.2 163 61.3
RcHm_v2.0_Chr1g0325281 Rosa chinensis HOM05D006018 ORTHO05D007545 3.5e-50 202.2 155 63.9
BraA07t28684Z Brassica rapa HOM05D006018 ORTHO05D007545 4.5e-50 201.8 156 62.8
CSS0019594 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 4.5e-50 201.8 156 60.3
CSS0043702 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 4.5e-50 201.8 156 60.3
CiPaw.13G043500 Carya illinoinensis HOM05D006018 ORTHO05D007545 4.5e-50 201.8 157 61.8
Phvul.007G234300 Phaseolus vulgaris HOM05D006018 ORTHO05D007545 4.5e-50 201.8 160 58.1
unitig_899.g14460 Utricularia gibba HOM05D006018 ORTHO05D007545 4.5e-50 201.8 158 62.0
BcaC06g35533 Brassica carinata HOM05D006018 ORTHO05D007545 5.9e-50 201.4 159 61.0
C07p13770 Brassica napus HOM05D006018 ORTHO05D007545 5.9e-50 201.4 159 61.0
CSS0004952 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 7.7e-50 201.1 156 60.3
THA.LOC104801755 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 7.7e-50 201.1 155 63.2
BcaB06g26497 Brassica carinata HOM05D006018 ORTHO05D007545 1.0e-49 200.7 159 61.0
Glyma.10G121524 Glycine max HOM05D006018 ORTHO05D007545 1.0e-49 200.7 160 59.4
Sp3g21150 Schrenkiella parvula HOM05D006018 ORTHO05D007545 1.0e-49 200.7 160 60.0
SpUn0047_0030 Schrenkiella parvula HOM05D006018 ORTHO05D007545 1.0e-49 200.7 160 60.0
THA.LOC104804947 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 1.0e-49 200.7 155 62.6
A07p08930 Brassica napus HOM05D006018 ORTHO05D007545 1.3e-49 200.3 156 62.2
Glyma.20G072400 Glycine max HOM05D006018 ORTHO05D007545 1.3e-49 200.3 160 58.1
SGA_v2.0_scaffold2G01315 Striga asiatica HOM05D006018 ORTHO05D007545 1.3e-49 200.3 156 61.5
Atru.chr12.1071 Acer truncatum HOM05D006018 ORTHO05D007545 2.2e-49 199.5 156 60.3
Prupe.2G072000 Prunus persica HOM05D006018 ORTHO05D007545 2.2e-49 199.5 151 63.6
arahy.Tifrunner.gnm1.ann1.QNY1I5 Arachis hypogaea HOM05D006018 ORTHO05D007545 2.9e-49 199.1 163 58.3
RcHm_v2.0_Chr1g0325311 Rosa chinensis HOM05D006018 ORTHO05D007545 2.9e-49 199.1 155 63.2
PGSC0003DMG401001978 Solanum tuberosum HOM05D006018 ORTHO05D007545 2.9e-49 199.1 156 60.9
Eucgr.J00283 Eucalyptus grandis HOM05D006018 ORTHO05D007545 3.8e-49 198.7 162 60.5
Lj3A923T60 Lonicera japonica HOM05D006018 ORTHO05D007545 3.8e-49 198.7 163 59.5
Lalb_Chr19g0128951 Lupinus albus HOM05D006018 ORTHO05D007545 3.8e-49 198.7 160 59.4
Medtr1g048370 Medicago truncatula HOM05D006018 ORTHO05D007545 3.8e-49 198.7 155 61.3
PGR044G0766 Punica granatum HOM05D006018 ORTHO05D007545 3.8e-49 198.7 158 60.8
arahy.Tifrunner.gnm1.ann1.Z7U9ST Arachis hypogaea HOM05D006018 ORTHO05D007545 5.0e-49 198.4 164 57.9
CANSAT56G4342 Cannabis sativa HOM05D006018 ORTHO05D007545 5.0e-49 198.4 158 60.1
MD02G1258600 Malus domestica HOM05D006018 ORTHO05D007545 5.0e-49 198.4 163 62.0
Psat6g049120 Pisum sativum HOM05D006018 ORTHO05D007545 5.0e-49 198.4 155 60.6
AL1G64680 Arabidopsis lyrata HOM05D006018 ORTHO05D007545 6.5e-49 198.0 159 61.6
arahy.Tifrunner.gnm1.ann1.V4FSHN Arachis hypogaea HOM05D006018 ORTHO05D007545 6.5e-49 198.0 164 57.9
TPR.G19796 Trifolium pratense HOM05D006018 ORTHO05D007545 6.5e-49 198.0 155 61.3
Sabra10G0189600 Salix brachista HOM05D006018 ORTHO05D007545 1.1e-48 197.2 163 60.7
Solyc11g006550.3 Solanum lycopersicum HOM05D006018 ORTHO05D007545 1.1e-48 197.2 156 60.3
Haze_03464 Corylus avellana HOM05D006018 ORTHO05D007545 1.9e-48 196.4 205 50.7
Peaxi162Scf00725g00522 Petunia axillaris HOM05D006018 ORTHO05D007545 1.9e-48 196.4 156 59.6
CsaV3_5G035210 Cucumis sativus L. HOM05D006018 ORTHO05D007545 2.5e-48 196.1 156 61.5
Hund06805 Selenicereus undatus HOM05D006018 ORTHO05D007545 3.2e-48 195.7 160 60.0
Sopen11g002450 Solanum pennellii HOM05D006018 ORTHO05D007545 3.2e-48 195.7 156 60.3
Duzib106G1265 Durio zibethinus HOM05D006018 ORTHO05D007545 5.5e-48 194.9 158 59.5
Nitab4.5_0007799g0030 Nicotiana tabacum HOM05D006018 ORTHO05D007545 7.2e-48 194.5 156 60.3
Sed0014972 Sechium edule HOM05D006018 ORTHO05D007545 7.2e-48 194.5 156 60.3
arahy.Tifrunner.gnm1.ann1.Z71440 Arachis hypogaea HOM05D006018 ORTHO05D007545 1.2e-47 193.7 163 58.3
Nitab4.5_0001781g0180 Nicotiana tabacum HOM05D006018 ORTHO05D007545 1.2e-47 193.7 162 58.6
Thecc.10G116100 Theobroma cacao HOM05D006018 ORTHO05D007545 2.7e-47 192.6 158 60.1
Ciclev10016037m.g Citrus clementina HOM05D006018 ORTHO05D007545 3.6e-47 192.2 163 58.9
Potri.010G242600 Populus trichocarpa HOM05D006018 ORTHO05D007545 6.1e-47 191.4 157 59.9
CAN.G143.25 Capsicum annuum HOM05D006018 ORTHO05D007545 4.0e-46 188.7 156 59.0
Cpa.g.sc54.21 Carica papaya HOM05D006018 ORTHO05D007545 6.8e-46 188.0 156 59.0
EL10Ac4g08718 Beta vulgaris HOM05D006018 ORTHO05D007545 3.4e-45 185.7 160 53.1
Cc02_g09390 Coffea canephora HOM05D006018 ORTHO05D007545 3.4e-45 185.7 160 57.5
AUR62034490 Chenopodium quinoa HOM05D006018 ORTHO05D007545 5.7e-45 184.9 156 57.7
Pp3c14_15560 Physcomitrium patens HOM05D006018 ORTHO05D007545 1.3e-41 173.7 155 56.1
Ah.06g186820 Amaranthus hybridus HOM05D006018 ORTHO05D007545 1.5e-40 170.2 174 49.4
ClCG05G021930 Citrullus lanatus HOM05D006018 ORTHO05D007545 1.5e-40 170.2 160 54.4
vmacro10321 Vaccinium macrocarpon HOM05D006018 ORTHO05D007545 1.9e-40 169.9 199 46.2
FAN01G2803 Fragaria x ananassa HOM05D006018 ORTHO05D007545 4.3e-40 168.7 159 54.1
Mapoly0079s0008 Marchantia polymorpha HOM05D006018 ORTHO05D007545 1.0e-38 164.1 155 53.5
Nn2g14297 Nelumbo nucifera HOM05D006018 ORTHO05D007545 7.5e-37 157.9 123 60.2
CBR_g20325 Chara braunii HOM05D006018 ORTHO05D007545 1.3e-36 157.1 151 49.7
FAN03G1346 Fragaria x ananassa HOM05D006018 ORTHO05D007545 8.3e-36 154.5 118 61.9
AagrBONN_evm.TU.Sc2ySwM_344.453 Anthoceros agrestis HOM05D006018 ORTHO05D007545 7.0e-35 151.4 151 49.0
SMO134G0227 Selaginella moellendorffii HOM05D006018 ORTHO05D007545 3.5e-34 149.1 162 46.9
Actinidia34731 Actinidia chinensis HOM05D006018 ORTHO05D007545 4.3e-32 142.1 97 64.9
Hma1.2p1_0381F.1_g139980 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 3.1e-30 136.0 93 66.7
Cre12.g504950 Chlamydomonas reinhardtii HOM05D006018 ORTHO05D007545 1.9e-27 126.7 151 43.0
AUR62034169 Chenopodium quinoa HOM05D006018 ORTHO05D007545 8.6e-25 117.9 93 57.0
arahy.Tifrunner.gnm1.ann1.BN00BV Arachis hypogaea HOM05D006018 ORTHO05D007545 1.5e-21 107.1 92 57.6
arahy.Tifrunner.gnm1.ann1.WX42FR Arachis hypogaea HOM05D006018 ORTHO05D007545 2.0e-21 106.7 100 53.0
MCO08G151 Micromonas commoda HOM05D006018 ORTHO05D007545 6.4e-20 101.7 151 37.1
PRCOL_00005817 Prasinoderma coloniale HOM05D006018 ORTHO05D007545 4.1e-19 99.0 163 41.1
QL04p047894 Quercus lobata HOM05D006018 ORTHO05D007545 1.1e-16 90.9 62 62.9
Eucgr.J00287 Eucalyptus grandis HOM05D006018 ORTHO05D007545 7.3e-16 88.2 60 68.3
Sc09g0005130 Simmondsia chinensis HOM05D006018 ORTHO05D007545 2.8e-15 86.3 63 58.7
SEGI_33218 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 6.2e-15 85.1 73 61.6
SEGI_30780 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 3.1e-14 82.8 68 63.2


User provided reference genes

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