Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0859400 Oryza sativa ssp. japonica HOM05D007039 ORTHO05D008886 1.6e-146 522.7 260 100.0
Zm00001eb147230 Zea mays HOM05D007039 ORTHO05D008886 4.6e-125 451.4 257 86.4
Zm00001eb366890 Zea mays HOM05D007039 ORTHO05D008886 2.5e-123 445.7 257 85.2
RcHm_v2.0_Chr1g0331721 Rosa chinensis HOM05D007039 ORTHO05D008886 4.6e-93 345.1 243 67.9
FAN01G2006 Fragaria x ananassa HOM05D007039 ORTHO05D008886 3.9e-92 342.0 257 65.0
FAN06G3803 Fragaria x ananassa HOM05D007039 ORTHO05D008886 8.7e-92 340.9 243 66.7
TAR623G0720 Trochodendron aralioides HOM05D007039 ORTHO05D008886 8.7e-92 340.9 253 66.8
HPP92_006806 Vanilla planifolia HOM05D007039 ORTHO05D008886 3.3e-91 339.0 236 68.2
GSVIVG01001001001 Vitis vinifera HOM05D007039 ORTHO05D008886 5.6e-91 338.2 253 64.0
FAN03G1588 Fragaria x ananassa HOM05D007039 ORTHO05D008886 3.7e-90 335.5 257 63.4
TWI63G1767 Tripterygium wilfordii HOM05D007039 ORTHO05D008886 5.3e-89 331.6 257 61.9
Prupe.2G067300 Prunus persica HOM05D007039 ORTHO05D008886 6.9e-89 331.3 242 65.3
PSO339G1176 Papaver somniferum HOM05D007039 ORTHO05D008886 9.0e-89 330.9 257 62.6
PSO384G1372 Papaver somniferum HOM05D007039 ORTHO05D008886 9.0e-89 330.9 257 62.6
FAN10G1571 Fragaria x ananassa HOM05D007039 ORTHO05D008886 3.4e-88 328.9 271 60.9
Hund22275 Selenicereus undatus HOM05D007039 ORTHO05D008886 4.5e-88 328.6 250 61.2
MD02G1261300 Malus domestica HOM05D007039 ORTHO05D008886 5.8e-88 328.2 241 64.7
Migut.F00878 Erythranthe guttata HOM05D007039 ORTHO05D008886 9.9e-88 327.4 240 63.8
Aqoxy2G01207 Aquilegia oxysepala HOM05D007039 ORTHO05D008886 1.3e-87 327.0 250 62.0
Oeu025598.1 Olea europaea HOM05D007039 ORTHO05D008886 1.7e-87 326.6 250 62.4
SalBow6G1307 Salvia bowleyana HOM05D007039 ORTHO05D008886 1.7e-87 326.6 244 62.7
Sc20g0001160 Simmondsia chinensis HOM05D007039 ORTHO05D008886 1.7e-87 326.6 245 63.3
AUR62041513 Chenopodium quinoa HOM05D007039 ORTHO05D008886 2.9e-87 325.9 253 59.7
Rhsim09G0142000 Rhododendron simsii HOM05D007039 ORTHO05D008886 3.8e-87 325.5 253 62.8
Cc02_g09650 Coffea canephora HOM05D007039 ORTHO05D008886 6.4e-87 324.7 257 59.9
CiPaw.14G032800 Carya illinoinensis HOM05D007039 ORTHO05D008886 1.1e-86 323.9 253 62.1
Potri.010G238700 Populus trichocarpa HOM05D007039 ORTHO05D008886 1.4e-86 323.6 252 61.5
Dinv11837 Davidia involucrata HOM05D007039 ORTHO05D008886 3.2e-86 322.4 255 61.2
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 1.6e-85 320.1 253 60.1
Nn6g34917 Nelumbo nucifera HOM05D007039 ORTHO05D008886 2.1e-85 319.7 256 60.9
Ah.06g186600 Amaranthus hybridus HOM05D007039 ORTHO05D008886 3.5e-85 318.9 251 59.4
HanXRQChr08g0217501 Helianthus annuus HOM05D007039 ORTHO05D008886 6.0e-85 318.2 239 62.3
Lsat_1_v5_gn_8_24101 Lactuca sativa HOM05D007039 ORTHO05D008886 6.0e-85 318.2 244 59.8
SGA_v2.0_scaffold62G21336 Striga asiatica HOM05D007039 ORTHO05D008886 1.0e-84 317.4 258 58.9
EL10Ac4g08687 Beta vulgaris HOM05D007039 ORTHO05D008886 1.3e-84 317.0 253 58.5
Eucgr.J00258 Eucalyptus grandis HOM05D007039 ORTHO05D008886 3.0e-84 315.8 252 58.7
Sabra10G0186900 Salix brachista HOM05D007039 ORTHO05D008886 3.9e-84 315.5 238 61.3
MD07G1059500 Malus domestica HOM05D007039 ORTHO05D008886 5.1e-84 315.1 241 61.4
Gorai.010G214100 Gossypium raimondii HOM05D007039 ORTHO05D008886 1.5e-83 313.5 247 61.5
Lj2A32T31 Lonicera japonica HOM05D007039 ORTHO05D008886 1.9e-83 313.2 241 60.6
Manes.07G087400 Manihot esculenta HOM05D007039 ORTHO05D008886 1.9e-83 313.2 243 61.3
Thecc.07G140700 Theobroma cacao HOM05D007039 ORTHO05D008886 5.6e-83 311.6 241 61.0
Gohir.A06G173100 Gossypium hirsutum HOM05D007039 ORTHO05D008886 9.6e-83 310.8 247 60.7
Gorai.010G214000 Gossypium raimondii HOM05D007039 ORTHO05D008886 9.6e-83 310.8 247 61.1
CANSAT56G1368 Cannabis sativa HOM05D007039 ORTHO05D008886 1.3e-82 310.5 243 61.3
Gohir.D06G182700 Gossypium hirsutum HOM05D007039 ORTHO05D008886 1.3e-82 310.5 247 61.1
arahy.Tifrunner.gnm1.ann1.2NV5LW Arachis hypogaea HOM05D007039 ORTHO05D008886 1.6e-82 310.1 240 60.4
arahy.Tifrunner.gnm1.ann1.XC1RGZ Arachis hypogaea HOM05D007039 ORTHO05D008886 2.1e-82 309.7 240 60.4
CSS0047124 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 2.8e-82 309.3 240 60.0
Ciclev10016452m.g Citrus clementina HOM05D007039 ORTHO05D008886 4.8e-82 308.5 240 58.8
COL.COLO4_17444 Corchorus olitorius HOM05D007039 ORTHO05D008886 6.2e-82 308.1 241 61.4
Gohir.D06G183100 Gossypium hirsutum HOM05D007039 ORTHO05D008886 6.2e-82 308.1 247 61.1
Atru.chr12.1023 Acer truncatum HOM05D007039 ORTHO05D008886 1.1e-81 307.4 252 56.3
CSS0023700 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 1.1e-81 307.4 250 58.8
AUR62042080 Chenopodium quinoa HOM05D007039 ORTHO05D008886 1.4e-81 307.0 225 62.2
Duzib106G1061 Durio zibethinus HOM05D007039 ORTHO05D008886 1.8e-81 306.6 247 58.3
Oeu036842.1 Olea europaea HOM05D007039 ORTHO05D008886 2.4e-81 306.2 241 61.0
Potri.008G020500 Populus trichocarpa HOM05D007039 ORTHO05D008886 3.1e-81 305.8 239 61.1
Gohir.D06G183000 Gossypium hirsutum HOM05D007039 ORTHO05D008886 4.0e-81 305.4 247 60.3
QL04p044873 Quercus lobata HOM05D007039 ORTHO05D008886 5.3e-81 305.1 245 60.8
vmacro10308 Vaccinium macrocarpon HOM05D007039 ORTHO05D008886 1.5e-80 303.5 300 52.3
Ca_25665_v3 Cicer arietinum L. HOM05D007039 ORTHO05D008886 3.4e-80 302.4 241 61.4
TPR.G2471 Trifolium pratense HOM05D007039 ORTHO05D008886 4.5e-80 302.0 240 60.8
Glyma.20G110700 Glycine max HOM05D007039 ORTHO05D008886 5.8e-80 301.6 241 58.9
Lalb_Chr06g0166411 Lupinus albus HOM05D007039 ORTHO05D008886 1.3e-79 300.4 240 58.3
PGSC0003DMG400016998 Solanum tuberosum HOM05D007039 ORTHO05D008886 1.3e-79 300.4 240 59.2
Psat6g231000 Pisum sativum HOM05D007039 ORTHO05D008886 1.7e-79 300.1 245 61.2
Phvul.007G022300 Phaseolus vulgaris HOM05D007039 ORTHO05D008886 2.2e-79 299.7 241 57.7
Sed0014501 Sechium edule HOM05D007039 ORTHO05D008886 2.9e-79 299.3 244 58.6
Sopen04g004820 Solanum pennellii HOM05D007039 ORTHO05D008886 3.8e-79 298.9 256 56.2
HPP92_009745 Vanilla planifolia HOM05D007039 ORTHO05D008886 3.8e-79 298.9 230 59.6
Medtr1g112080 Medicago truncatula HOM05D007039 ORTHO05D008886 4.9e-79 298.5 240 59.6
Lj5g0024269 Lotus japonicus HOM05D007039 ORTHO05D008886 8.4e-79 297.7 237 59.5
Solyc04g009700.3 Solanum lycopersicum HOM05D007039 ORTHO05D008886 1.9e-78 296.6 256 55.5
THA.LOC104801579 Tarenaya hassleriana HOM05D007039 ORTHO05D008886 3.2e-78 295.8 243 58.4
unitig_748.g8774 Utricularia gibba HOM05D007039 ORTHO05D008886 1.2e-77 293.9 252 56.7
VMungo0720G0617 Vigna mungo HOM05D007039 ORTHO05D008886 1.2e-77 293.9 241 57.3
CAN.G186.55 Capsicum annuum HOM05D007039 ORTHO05D008886 2.7e-77 292.7 240 58.3
MELO3C019894.2 Cucumis melo HOM05D007039 ORTHO05D008886 2.7e-77 292.7 244 58.2
HPP92_009768 Vanilla planifolia HOM05D007039 ORTHO05D008886 1.0e-76 290.8 229 58.1
ClCG08G008260 Citrullus lanatus HOM05D007039 ORTHO05D008886 5.1e-76 288.5 284 51.4
Nitab4.5_0003927g0060 Nicotiana tabacum HOM05D007039 ORTHO05D008886 2.0e-72 276.6 242 57.4
TAR633G1803 Trochodendron aralioides HOM05D007039 ORTHO05D008886 3.4e-72 275.8 236 54.2
Zm00001eb092690 Zea mays HOM05D007039 ORTHO05D008886 1.0e-71 274.2 229 54.6
Peaxi162Scf00195g01020 Petunia axillaris HOM05D007039 ORTHO05D008886 1.0e-68 264.2 253 53.8
Os12g0152800 Oryza sativa ssp. japonica HOM05D007039 ORTHO05D008886 1.9e-67 260.0 237 50.6
Cpa.g.sc56.15 Carica papaya HOM05D007039 ORTHO05D008886 3.3e-67 259.2 180 63.9
Dinv09617 Davidia involucrata HOM05D007039 ORTHO05D008886 2.8e-66 256.1 253 52.6
ECA233G2799 Erigeron canadensis HOM05D007039 ORTHO05D008886 4.5e-64 248.8 186 62.4
FvH4_7g05130 Fragaria vesca HOM05D007039 ORTHO05D008886 2.5e-62 243.0 182 63.2
Mapoly0010s0050 Marchantia polymorpha HOM05D007039 ORTHO05D008886 1.7e-58 230.3 245 45.3
MSTRG.9060 Avicennia marina HOM05D007039 ORTHO05D008886 2.8e-58 229.6 182 58.2
Glyma.10G279000 Glycine max HOM05D007039 ORTHO05D008886 1.8e-57 226.9 237 50.6
AagrBONN_evm.TU.Sc2ySwM_362.1562 Anthoceros agrestis HOM05D007039 ORTHO05D008886 9.1e-57 224.6 213 48.4
Oeu036841.1 Olea europaea HOM05D007039 ORTHO05D008886 1.2e-56 224.2 183 57.4
Pp3c15_5790 Physcomitrium patens HOM05D007039 ORTHO05D008886 2.0e-56 223.4 203 49.3
SMO367G0592 Selaginella moellendorffii HOM05D007039 ORTHO05D008886 2.6e-56 223.0 228 49.1
PGR142G0235 Punica granatum HOM05D007039 ORTHO05D008886 4.5e-56 222.2 181 55.8
PGSC0003DMG400023289 Solanum tuberosum HOM05D007039 ORTHO05D008886 2.5e-54 216.5 183 54.6
CsaV3_6G004220 Cucumis sativus L. HOM05D007039 ORTHO05D008886 7.2e-54 214.9 180 56.7
Eucgr.J00257 Eucalyptus grandis HOM05D007039 ORTHO05D008886 2.1e-53 213.4 179 57.0
AagrBONN_evm.TU.Sc2ySwM_228.3073 Anthoceros agrestis HOM05D007039 ORTHO05D008886 3.6e-53 212.6 181 53.0
CBR_g32363 Chara braunii HOM05D007039 ORTHO05D008886 1.8e-52 210.3 195 49.2
CDE08G0883 Ceratophyllum demersum HOM05D007039 ORTHO05D008886 1.7e-50 203.8 147 59.9
CSS0008887 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 4.8e-50 202.2 187 51.9
Zm00001eb197030 Zea mays HOM05D007039 ORTHO05D008886 8.2e-50 201.4 178 50.0
CSS0041399 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 9.7e-43 177.9 178 49.4
DCAR_019005 Daucus carota HOM05D007039 ORTHO05D008886 1.7e-39 167.2 109 66.1
SMO353G0277 Selaginella moellendorffii HOM05D007039 ORTHO05D008886 5.0e-39 165.6 180 47.2
Cre01.g018100 Chlamydomonas reinhardtii HOM05D007039 ORTHO05D008886 8.3e-34 148.3 205 36.1
Nitab4.5_0000691g0070 Nicotiana tabacum HOM05D007039 ORTHO05D008886 9.8e-27 124.8 241 35.7
PRCOL_00002076 Prasinoderma coloniale HOM05D007039 ORTHO05D008886 1.6e-24 117.5 237 29.5
MD04G1248500 Malus domestica HOM05D007039 ORTHO05D008886 1.0e-20 104.8 105 49.5


User provided reference genes

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