Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0858900 Oryza sativa ssp. japonica HOM05D003642 ORTHO05D004460 1.8e-226 788.9 394 100.0
Zm00001eb366950 Zea mays HOM05D003642 ORTHO05D004460 6.0e-177 624.4 399 80.7
Zm00001eb147290 Zea mays HOM05D003642 ORTHO05D004460 5.6e-167 591.3 399 77.2
MBI17_g01557_MAGBIO Magnolia biondii HOM05D003642 ORTHO05D004460 4.7e-97 359.0 408 47.8
MD03G1142400 Malus domestica HOM05D003642 ORTHO05D004460 1.0e-96 357.8 414 49.8
Prupe.6G127500 Prunus persica HOM05D003642 ORTHO05D004460 1.4e-96 357.5 411 49.9
VMungo1127G0822 Vigna mungo HOM05D003642 ORTHO05D004460 1.8e-96 357.1 417 49.9
Hma1.2p1_0305F.1_g119710 Hydrangea macrophylla HOM05D003642 ORTHO05D004460 6.7e-96 355.1 412 49.8
Hma1.2p1_0305F.1_g119720 Hydrangea macrophylla HOM05D003642 ORTHO05D004460 6.7e-96 355.1 412 49.8
Hma1.2p1_0578F.1_g182375 Hydrangea macrophylla HOM05D003642 ORTHO05D004460 6.7e-96 355.1 412 49.8
FAN25G1659 Fragaria x ananassa HOM05D003642 ORTHO05D004460 1.2e-95 354.4 408 50.5
Ca_19399_v3 Cicer arietinum L. HOM05D003642 ORTHO05D004460 1.5e-95 354.0 416 48.8
Phvul.011G093000 Phaseolus vulgaris HOM05D003642 ORTHO05D004460 2.0e-95 353.6 421 48.5
Psat7g189000 Pisum sativum HOM05D003642 ORTHO05D004460 2.0e-95 353.6 409 49.1
Lj3g0020685 Lotus japonicus HOM05D003642 ORTHO05D004460 2.6e-95 353.2 414 48.6
Medtr4g053520 Medicago truncatula HOM05D003642 ORTHO05D004460 2.6e-95 353.2 412 48.1
FAN21G1092 Fragaria x ananassa HOM05D003642 ORTHO05D004460 3.3e-95 352.8 409 50.9
RcHm_v2.0_Chr5g0044221 Rosa chinensis HOM05D003642 ORTHO05D004460 4.4e-95 352.4 412 49.8
Glyma.12G088200 Glycine max HOM05D003642 ORTHO05D004460 9.7e-95 351.3 426 47.7
FAN16G3636 Fragaria x ananassa HOM05D003642 ORTHO05D004460 1.3e-94 350.9 409 50.1
Actinidia07238 Actinidia chinensis HOM05D003642 ORTHO05D004460 1.7e-94 350.5 412 49.5
Glyma.11G184200 Glycine max HOM05D003642 ORTHO05D004460 2.2e-94 350.1 419 48.2
ATR0820G225 Amborella trichopoda HOM05D003642 ORTHO05D004460 2.8e-94 349.7 415 46.0
Nn2g14115 Nelumbo nucifera HOM05D003642 ORTHO05D004460 4.8e-94 349.0 397 50.4
MBI01_g03598_MAGBIO Magnolia biondii HOM05D003642 ORTHO05D004460 3.1e-93 346.3 405 46.7
HPP92_025134 Vanilla planifolia HOM05D003642 ORTHO05D004460 3.1e-93 346.3 381 50.4
CsaV3_6G015050 Cucumis sativus L. HOM05D003642 ORTHO05D004460 4.1e-93 345.9 412 47.3
MD11G1162900 Malus domestica HOM05D003642 ORTHO05D004460 4.1e-93 345.9 410 48.3
HPP92_026090 Vanilla planifolia HOM05D003642 ORTHO05D004460 4.1e-93 345.9 381 50.4
Gohir.D07G113300 Gossypium hirsutum HOM05D003642 ORTHO05D004460 5.3e-93 345.5 423 46.3
Aqoxy2G01228 Aquilegia oxysepala HOM05D003642 ORTHO05D004460 1.6e-92 344.0 415 47.7
PGR102G1012 Punica granatum HOM05D003642 ORTHO05D004460 2.0e-92 343.6 407 48.4
CDE08G0849 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 5.9e-92 342.0 367 48.0
Gorai.001G121600 Gossypium raimondii HOM05D003642 ORTHO05D004460 7.7e-92 341.7 423 46.1
Eucgr.B03872 Eucalyptus grandis HOM05D003642 ORTHO05D004460 1.0e-91 341.3 433 48.5
Lalb_Chr03g0028031 Lupinus albus HOM05D003642 ORTHO05D004460 1.0e-91 341.3 412 47.1
ClCG02G022190 Citrullus lanatus HOM05D003642 ORTHO05D004460 1.3e-91 340.9 412 47.3
Duzib170G0814 Durio zibethinus HOM05D003642 ORTHO05D004460 1.3e-91 340.9 421 45.1
Migut.D02354 Erythranthe guttata HOM05D003642 ORTHO05D004460 1.3e-91 340.9 411 48.2
Actinidia24206 Actinidia chinensis HOM05D003642 ORTHO05D004460 1.7e-91 340.5 394 49.7
Thecc.09G285800 Theobroma cacao HOM05D003642 ORTHO05D004460 2.2e-91 340.1 413 46.7
Manes.11G160800 Manihot esculenta HOM05D003642 ORTHO05D004460 3.8e-91 339.3 417 47.0
SGA_v2.0_scaffold147G36369 Striga asiatica HOM05D003642 ORTHO05D004460 3.8e-91 339.3 402 48.0
HPP92_011490 Vanilla planifolia HOM05D003642 ORTHO05D004460 5.0e-91 339.0 414 46.9
MELO3C021417.2 Cucumis melo HOM05D003642 ORTHO05D004460 6.5e-91 338.6 412 46.8
CiPaw.13G137400 Carya illinoinensis HOM05D003642 ORTHO05D004460 8.5e-91 338.2 413 47.5
CDE02G0744 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 8.5e-91 338.2 410 46.8
Sabra04G0123900 Salix brachista HOM05D003642 ORTHO05D004460 8.5e-91 338.2 402 48.5
Haze_23398 Corylus avellana HOM05D003642 ORTHO05D004460 1.5e-90 337.4 416 47.1
FvH4_3g24660 Fragaria vesca HOM05D003642 ORTHO05D004460 2.5e-90 336.7 389 50.6
Cfa010037 Carpinus fangiana HOM05D003642 ORTHO05D004460 7.2e-90 335.1 420 46.7
Potri.004G184200 Populus trichocarpa HOM05D003642 ORTHO05D004460 7.2e-90 335.1 415 47.2
Peaxi162Scf00091g00013 Petunia axillaris HOM05D003642 ORTHO05D004460 1.2e-89 334.3 406 47.5
TWI31G0358 Tripterygium wilfordii HOM05D003642 ORTHO05D004460 1.6e-89 334.0 410 47.3
TAR623G1689 Trochodendron aralioides HOM05D003642 ORTHO05D004460 1.6e-89 334.0 405 47.7
TAR369G0447 Trochodendron aralioides HOM05D003642 ORTHO05D004460 2.1e-89 333.6 405 46.7
TPR.G17216 Trifolium pratense HOM05D003642 ORTHO05D004460 2.7e-89 333.2 410 44.6
COL.COLO4_19910 Corchorus olitorius HOM05D003642 ORTHO05D004460 3.6e-89 332.8 414 45.7
Manes.04G004900 Manihot esculenta HOM05D003642 ORTHO05D004460 6.1e-89 332.0 420 45.0
QL01p012516 Quercus lobata HOM05D003642 ORTHO05D004460 8.0e-89 331.6 392 49.0
AUR62039222 Chenopodium quinoa HOM05D003642 ORTHO05D004460 1.0e-88 331.3 421 46.3
Eucgr.B03871 Eucalyptus grandis HOM05D003642 ORTHO05D004460 1.0e-88 331.3 402 47.5
PSO384G4986 Papaver somniferum HOM05D003642 ORTHO05D004460 1.0e-88 331.3 407 46.7
THA.LOC104826418 Tarenaya hassleriana HOM05D003642 ORTHO05D004460 1.8e-88 330.5 415 47.0
Glyma.12G088100 Glycine max HOM05D003642 ORTHO05D004460 2.3e-88 330.1 412 46.4
Lj1A233T8 Lonicera japonica HOM05D003642 ORTHO05D004460 2.3e-88 330.1 408 48.5
Atru.chr3.3290 Acer truncatum HOM05D003642 ORTHO05D004460 3.0e-88 329.7 414 45.7
Dinv29465 Davidia involucrata HOM05D003642 ORTHO05D004460 3.0e-88 329.7 394 48.2
SGA_v2.0_scaffold22G09875 Striga asiatica HOM05D003642 ORTHO05D004460 3.0e-88 329.7 412 48.5
Gohir.A07G109500 Gossypium hirsutum HOM05D003642 ORTHO05D004460 4.0e-88 329.3 271 57.6
Nitab4.5_0002002g0040 Nicotiana tabacum HOM05D003642 ORTHO05D004460 4.0e-88 329.3 359 51.0
Ah.08g215830 Amaranthus hybridus HOM05D003642 ORTHO05D004460 5.2e-88 328.9 420 46.0
Nitab4.5_0005324g0040 Nicotiana tabacum HOM05D003642 ORTHO05D004460 5.2e-88 328.9 359 51.0
Ciclev10028611m.g Citrus clementina HOM05D003642 ORTHO05D004460 6.8e-88 328.6 418 44.3
Potri.009G144000 Populus trichocarpa HOM05D003642 ORTHO05D004460 6.8e-88 328.6 409 44.7
Rhsim13G0110400 Rhododendron simsii HOM05D003642 ORTHO05D004460 1.2e-87 327.8 404 48.0
THA.LOC104800538 Tarenaya hassleriana HOM05D003642 ORTHO05D004460 1.5e-87 327.4 419 47.3
CDE06G1048 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 3.4e-87 326.2 379 45.6
HPP92_006804 Vanilla planifolia HOM05D003642 ORTHO05D004460 3.4e-87 326.2 231 65.4
vmacro03309 Vaccinium macrocarpon HOM05D003642 ORTHO05D004460 7.5e-87 325.1 401 48.1
Solyc06g074370.3 Solanum lycopersicum HOM05D003642 ORTHO05D004460 1.7e-86 323.9 409 46.9
Sopen06g030830 Solanum pennellii HOM05D003642 ORTHO05D004460 2.2e-86 323.6 409 46.7
CAN.G919.22 Capsicum annuum HOM05D003642 ORTHO05D004460 2.8e-86 323.2 403 47.4
Oeu002383.1 Olea europaea HOM05D003642 ORTHO05D004460 2.8e-86 323.2 409 47.4
CANSAT54G0701 Cannabis sativa HOM05D003642 ORTHO05D004460 3.7e-86 322.8 417 44.8
Sc12g0004420 Simmondsia chinensis HOM05D003642 ORTHO05D004460 4.8e-86 322.4 416 45.4
Cc01_g09370 Coffea canephora HOM05D003642 ORTHO05D004460 6.3e-86 322.0 409 47.4
DCAR_012184 Daucus carota HOM05D003642 ORTHO05D004460 1.1e-85 321.2 395 45.6
Gohir.A05G081500 Gossypium hirsutum HOM05D003642 ORTHO05D004460 1.1e-85 321.2 411 46.2
Gorai.009G086400 Gossypium raimondii HOM05D003642 ORTHO05D004460 1.1e-85 321.2 417 44.8
HanXRQChr01g0024131 Helianthus annuus HOM05D003642 ORTHO05D004460 1.1e-85 321.2 422 44.5
AUR62009777 Chenopodium quinoa HOM05D003642 ORTHO05D004460 1.8e-85 320.5 364 48.9
PGSC0003DMG400007143 Solanum tuberosum HOM05D003642 ORTHO05D004460 3.1e-85 319.7 409 46.7
EL10Ac7g15808 Beta vulgaris HOM05D003642 ORTHO05D004460 4.1e-85 319.3 417 45.3
HanXRQChr11g0346801 Helianthus annuus HOM05D003642 ORTHO05D004460 9.1e-85 318.2 406 44.1
Sabra09G0111700 Salix brachista HOM05D003642 ORTHO05D004460 1.2e-84 317.8 387 45.7
Sed0019020 Sechium edule HOM05D003642 ORTHO05D004460 1.6e-84 317.4 410 44.6
MSTRG.18752 Avicennia marina HOM05D003642 ORTHO05D004460 2.0e-84 317.0 398 47.2
Nn6g34944 Nelumbo nucifera HOM05D003642 ORTHO05D004460 2.0e-84 317.0 231 64.5
ECA248G0168 Erigeron canadensis HOM05D003642 ORTHO05D002466 3.5e-84 316.2 359 47.9
Sabra09G0114400 Salix brachista HOM05D003642 ORTHO05D004460 5.9e-84 315.5 386 45.6
Duzib150G1635 Durio zibethinus HOM05D003642 ORTHO05D004460 1.0e-83 314.7 353 47.3
CSS0018533 Camellia sinensis var. sinensis HOM05D003642 ORTHO05D004460 2.9e-83 313.2 401 47.6
Lsat_1_v5_gn_1_61681 Lactuca sativa HOM05D003642 ORTHO05D004460 2.9e-83 313.2 415 44.6
SEGI_33073 Sequoiadendron giganteum HOM05D003642 ORTHO05D004460 3.8e-83 312.8 388 46.1
vmacro03307 Vaccinium macrocarpon HOM05D003642 ORTHO05D004460 1.1e-82 311.2 372 47.8
CSS0027733 Camellia sinensis var. sinensis HOM05D003642 ORTHO05D004460 4.2e-82 309.3 386 46.6
CSS0037628 Camellia sinensis var. sinensis HOM05D003642 ORTHO05D004460 4.2e-82 309.3 386 46.6
Glyma.12G088000 Glycine max HOM05D003642 ORTHO05D004460 5.5e-82 308.9 413 43.6
ECA233G1545 Erigeron canadensis HOM05D003642 ORTHO05D004460 2.8e-81 306.6 403 46.2
Os04g0506800 Oryza sativa ssp. japonica HOM05D003642 ORTHO05D004460 2.8e-81 306.6 298 56.7
Gohir.A08G004800 Gossypium hirsutum HOM05D003642 ORTHO05D004460 4.7e-81 305.8 415 43.6
Zm00001eb196980 Zea mays HOM05D003642 ORTHO05D004460 6.1e-81 305.4 290 55.2
Gohir.D05G084500 Gossypium hirsutum HOM05D003642 ORTHO05D004460 1.0e-80 304.7 411 44.8
Lsat_1_v5_gn_6_40461 Lactuca sativa HOM05D003642 ORTHO05D004460 1.4e-80 304.3 406 44.6
SalBow6G1534 Salvia bowleyana HOM05D003642 ORTHO05D004460 1.8e-80 303.9 229 65.5
Gorai.004G009500 Gossypium raimondii HOM05D003642 ORTHO05D004460 4.0e-80 302.8 415 43.1
unitig_0.g1479 Utricularia gibba HOM05D003642 ORTHO05D004460 4.0e-80 302.8 395 46.3
arahy.Tifrunner.gnm1.ann1.H74NZW Arachis hypogaea HOM05D003642 ORTHO05D004460 2.0e-79 300.4 283 55.1
HanXRQChr12g0364601 Helianthus annuus HOM05D003642 ORTHO05D004460 2.0e-79 300.4 381 46.2
vmacro03308 Vaccinium macrocarpon HOM05D003642 ORTHO05D004460 9.8e-79 298.1 368 46.5
Zm00001eb077930 Zea mays HOM05D003642 ORTHO05D004460 9.8e-79 298.1 398 46.7
Os12g0151500 Oryza sativa ssp. japonica HOM05D003642 ORTHO05D004460 2.8e-78 296.6 246 59.8
PSO210G3660 Papaver somniferum HOM05D003642 ORTHO05D004460 1.1e-77 294.7 359 46.5
Zm00001eb426190 Zea mays HOM05D003642 ORTHO05D004460 2.4e-77 293.5 371 46.6
AL1G18680 Arabidopsis lyrata HOM05D003642 ORTHO05D004460 9.2e-77 291.6 415 42.9
CARHR008130 Cardamine hirsuta HOM05D003642 ORTHO05D004460 9.2e-77 291.6 413 43.8
Mapoly0005s0249 Marchantia polymorpha HOM05D003642 ORTHO05D004460 2.0e-76 290.4 236 58.9
SMO145G0137 Selaginella moellendorffii HOM05D003642 ORTHO05D004460 2.0e-76 290.4 294 48.6
Sp1g06910 Schrenkiella parvula HOM05D003642 ORTHO05D004460 4.5e-76 289.3 417 42.4
AT1G08280 Arabidopsis thaliana HOM05D003642 ORTHO05D004460 1.7e-75 287.3 419 42.0
Thhalv10007826m.g Eutrema salsugineum HOM05D003642 ORTHO05D004460 2.3e-75 287.0 416 43.0
BcaB07g34071 Brassica carinata HOM05D003642 ORTHO05D004460 2.9e-75 286.6 421 42.8
SMO331G0026 Selaginella moellendorffii HOM05D003642 ORTHO05D004460 5.0e-75 285.8 274 53.3
BraA06t23738Z Brassica rapa HOM05D003642 ORTHO05D004460 6.6e-75 285.4 425 42.1
C05p06380 Brassica napus HOM05D003642 ORTHO05D004460 1.1e-74 284.6 421 42.5
BolC5t29393H Brassica oleracea HOM05D003642 ORTHO05D004460 1.1e-74 284.6 421 42.5
arahy.Tifrunner.gnm1.ann1.U1TIAA Arachis hypogaea HOM05D003642 ORTHO05D004460 4.3e-74 282.7 201 64.2
BcaB07g34070 Brassica carinata HOM05D003642 ORTHO05D004460 5.6e-74 282.3 365 45.8
Rhsim13G0110200 Rhododendron simsii HOM05D003642 ORTHO05D004460 9.5e-74 281.6 414 42.8
A06p05300 Brassica napus HOM05D003642 ORTHO05D004460 2.1e-73 280.4 421 42.0
Mapoly0001s0264 Marchantia polymorpha HOM05D003642 ORTHO05D004460 4.7e-73 279.3 361 42.9
arahy.Tifrunner.gnm1.ann1.SR1X9W Arachis hypogaea HOM05D003642 ORTHO05D004460 4.0e-72 276.2 199 63.3
Carub.0001s0763 Capsella rubella HOM05D003642 ORTHO05D004460 1.7e-70 270.8 217 58.5
Zm00001eb092710 Zea mays HOM05D003642 ORTHO05D004460 9.2e-69 265.0 264 52.3
TWI75G1212 Tripterygium wilfordii HOM05D003642 ORTHO05D004460 4.6e-68 262.7 373 41.0
CiPaw.14G101500 Carya illinoinensis HOM05D003642 ORTHO05D004460 6.0e-68 262.3 413 40.9
AagrBONN_evm.TU.Sc2ySwM_228.2668 Anthoceros agrestis HOM05D003642 ORTHO05D004460 3.3e-66 256.5 377 41.6
unitig_746.g26606 Utricularia gibba HOM05D003642 ORTHO05D004460 1.4e-64 251.1 252 50.4
arahy.Tifrunner.gnm1.ann1.GDD8RQ Arachis hypogaea HOM05D003642 ORTHO05D004460 1.2e-63 248.1 218 55.0
FAN11G1888 Fragaria x ananassa HOM05D003642 ORTHO05D004460 4.9e-62 242.7 389 42.2
unitig_899.g15371 Utricularia gibba HOM05D003642 ORTHO05D004460 9.2e-61 238.4 260 48.8
Pp3c14_26500 Physcomitrium patens HOM05D003642 ORTHO05D004460 1.6e-57 227.6 267 43.1
TAR369G0931 Trochodendron aralioides HOM05D003642 ORTHO05D004460 1.7e-51 207.6 152 64.5
GSVIVG01036150001 Vitis vinifera HOM05D003642 ORTHO05D004460 4.3e-50 203.0 408 35.0
Mapoly0032s0065 Marchantia polymorpha HOM05D003642 ORTHO05D004460 2.8e-49 200.3 261 41.8
Mapoly0028s0144 Marchantia polymorpha HOM05D003642 ORTHO05D004460 5.2e-48 196.1 247 44.1
Cpa.g.sc32.97 Carica papaya HOM05D003642 ORTHO05D004460 1.2e-47 194.9 414 36.2
Lj1A242T18 Lonicera japonica HOM05D003642 ORTHO05D004460 4.4e-47 193.0 369 38.8
PSO339G5820 Papaver somniferum HOM05D003642 ORTHO05D004460 7.8e-44 182.2 127 66.1
arahy.Tifrunner.gnm1.ann1.52W323 Arachis hypogaea HOM05D003642 ORTHO05D004460 8.1e-41 172.2 146 56.8
CBR_g16841 Chara braunii HOM05D003642 ORTHO05D004460 3.0e-35 153.7 225 39.1
unitig_899.g15372 Utricularia gibba HOM05D003642 ORTHO05D004460 4.3e-34 149.8 197 43.7
Gohir.D08G015066 Gossypium hirsutum HOM05D003642 ORTHO05D004460 5.3e-32 142.9 109 56.9
Pp3c15_22480 Physcomitrium patens HOM05D003642 ORTHO05D004460 9.0e-32 142.1 163 43.6
CDE06G0775 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 7.6e-31 139.0 93 61.3
Lj2C980T3 Lonicera japonica HOM05D003642 ORTHO05D004460 2.1e-28 131.0 410 30.5
CDE08G1668 Ceratophyllum demersum HOM05D003642 ORTHO05D003759 1.6e-20 104.8 118 46.6
Pp3c6_3550 Physcomitrium patens HOM05D003642 ORTHO05D004460 2.8e-17 94.0 190 31.6
CAN.G225.12 Capsicum annuum HOM05D003642 ORTHO05D004460 4.0e-16 90.1 86 53.5
Pp3c15_12330 Physcomitrium patens HOM05D003642 ORTHO05D004460 6.9e-16 89.4 118 38.1
Lalb_Chr19g0136571 Lupinus albus HOM05D003642 ORTHO05D004460 4.3e-10 70.1 50 58.0
CBR_g4114 Chara braunii HOM05D000019 ORTHO05D000353 4.1e-08 63.5 106 37.7
CBR_g39359 Chara braunii HOM05D000019 ORTHO05D000048 9.0e-08 62.4 216 30.1


User provided reference genes

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