Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0842801 Oryza sativa ssp. japonica HOM05D000081 ORTHO05D008417 1.8e-94 349.4 196 100.0
Zm00001eb148260 Zea mays HOM05D000081 ORTHO05D008417 3.8e-31 139.0 177 49.2
Zm00001eb367920 Zea mays HOM05D000081 ORTHO05D008417 1.1e-30 137.5 179 50.3
Gorai.012G104800 Gossypium raimondii HOM05D000081 ORTHO05D008417 4.5e-16 89.0 86 58.1
RcHm_v2.0_Chr3g0466341 Rosa chinensis HOM05D000081 ORTHO05D008417 4.5e-16 89.0 160 37.5
TAR369G0297 Trochodendron aralioides HOM05D000081 ORTHO05D008417 4.5e-16 89.0 96 50.0
Gohir.D04G121900 Gossypium hirsutum HOM05D000081 ORTHO05D008417 7.7e-16 88.2 86 58.1
Gohir.A04G083200 Gossypium hirsutum HOM05D000081 ORTHO05D008417 1.7e-15 87.0 81 58.0
MD04G1131000 Malus domestica HOM05D000081 ORTHO05D008417 2.9e-15 86.3 87 55.2
GSVIVG01034148001 Vitis vinifera HOM05D000081 ORTHO05D008417 5.0e-15 85.5 86 50.0
TAR623G0585 Trochodendron aralioides HOM05D000081 ORTHO05D008417 8.5e-15 84.7 84 53.6
Eucgr.K03115 Eucalyptus grandis HOM05D000081 ORTHO05D008417 1.1e-14 84.3 91 51.6
FAN05G3265 Fragaria x ananassa HOM05D000081 ORTHO05D008417 1.4e-14 84.0 160 36.9
Prupe.6G257500 Prunus persica HOM05D000081 ORTHO05D008417 1.4e-14 84.0 86 54.7
MD12G1144100 Malus domestica HOM05D000081 ORTHO05D008417 1.9e-14 83.6 156 36.5
TWI74G1640 Tripterygium wilfordii HOM05D000081 ORTHO05D008417 2.5e-14 83.2 81 54.3
Ah.12g059930 Amaranthus hybridus HOM05D000081 ORTHO05D008417 3.2e-14 82.8 82 54.9
FvH4_6g13470 Fragaria vesca HOM05D000081 ORTHO05D008417 3.2e-14 82.8 160 36.2
FAN14G2222 Fragaria x ananassa HOM05D000081 ORTHO05D008417 3.2e-14 82.8 160 36.2
Lj1g0016246 Lotus japonicus HOM05D000081 ORTHO05D008417 3.2e-14 82.8 92 48.9
Phvul.008G119400 Phaseolus vulgaris HOM05D000081 ORTHO05D008417 4.2e-14 82.4 87 52.9
FAN02G1604 Fragaria x ananassa HOM05D000081 ORTHO05D008417 5.5e-14 82.0 160 36.2
Dinv37159 Davidia involucrata HOM05D000081 ORTHO05D008417 1.6e-13 80.5 85 51.8
FAN09G1616 Fragaria x ananassa HOM05D000081 ORTHO05D008417 1.6e-13 80.5 86 52.3
Sabra06G0066400 Salix brachista HOM05D000081 ORTHO05D008417 1.6e-13 80.5 86 52.3
Nn2g11153 Nelumbo nucifera HOM05D000081 ORTHO05D008417 2.1e-13 80.1 90 50.0
Nn2g13394 Nelumbo nucifera HOM05D000081 ORTHO05D008417 2.1e-13 80.1 90 51.1
TAR633G0876 Trochodendron aralioides HOM05D000081 ORTHO05D008417 2.1e-13 80.1 87 50.6
CiPaw.09G194700 Carya illinoinensis HOM05D000081 ORTHO05D008417 2.7e-13 79.7 88 46.6
Potri.006G087000 Populus trichocarpa HOM05D000081 ORTHO05D008417 2.7e-13 79.7 79 53.2
Actinidia05321 Actinidia chinensis HOM05D000081 ORTHO05D008417 4.6e-13 79.0 85 50.6
Cpa.g.sc169.18 Carica papaya HOM05D000081 ORTHO05D008417 4.6e-13 79.0 76 55.3
Potri.016G099900 Populus trichocarpa HOM05D000081 ORTHO05D008417 6.1e-13 78.6 88 50.0
Atru.chr8.1995 Acer truncatum HOM05D000081 ORTHO05D008417 7.9e-13 78.2 89 53.9
Glyma.18G183100 Glycine max HOM05D000081 ORTHO05D008417 7.9e-13 78.2 86 50.0
EL10As1g23086 Beta vulgaris HOM05D000081 ORTHO05D008417 1.0e-12 77.8 88 46.6
Cfa017357 Carpinus fangiana HOM05D000081 ORTHO05D008417 1.0e-12 77.8 90 50.0
QL07p048759 Quercus lobata HOM05D000081 ORTHO05D008417 1.0e-12 77.8 86 50.0
Glyma.07G133700 Glycine max HOM05D000081 ORTHO05D008417 1.4e-12 77.4 86 50.0
ATR0559G094 Amborella trichopoda HOM05D000081 ORTHO05D008417 1.8e-12 77.0 90 46.7
Thecc.05G037200 Theobroma cacao HOM05D000081 ORTHO05D008417 1.8e-12 77.0 87 49.4
VMungo1383G0693 Vigna mungo HOM05D000081 ORTHO05D008417 1.8e-12 77.0 82 53.7
Manes.08G084300 Manihot esculenta HOM05D000081 ORTHO05D008417 2.3e-12 76.6 92 47.8
PGR004G2790 Punica granatum HOM05D000081 ORTHO05D008417 2.3e-12 76.6 93 47.3
Haze_20816 Corylus avellana HOM05D000081 ORTHO05D008417 3.0e-12 76.3 90 50.0
Lalb_Chr01g0022561 Lupinus albus HOM05D000081 ORTHO05D008417 3.0e-12 76.3 85 49.4
Cc06_g02490 Coffea canephora HOM05D000081 ORTHO05D008417 5.1e-12 75.5 90 46.7
COL.COLO4_14779 Corchorus olitorius HOM05D000181 ORTHO05D003134 5.1e-12 75.5 87 50.6
MBI05_g46007_MAGBIO Magnolia biondii HOM05D000081 ORTHO05D008417 5.1e-12 75.5 89 47.2
Psat3g139280 Pisum sativum HOM05D000081 ORTHO05D008417 5.1e-12 75.5 85 49.4
CsaV3_4G025110 Cucumis sativus L. HOM05D000081 ORTHO05D008417 6.7e-12 75.1 85 50.6
arahy.Tifrunner.gnm1.ann1.UJY589 Arachis hypogaea HOM05D000081 ORTHO05D008417 8.8e-12 74.7 93 46.2
MELO3C003140.2 Cucumis melo HOM05D000081 ORTHO05D008417 1.1e-11 74.3 85 50.6
Duzib106G0090 Durio zibethinus HOM05D000081 ORTHO05D008417 1.1e-11 74.3 87 49.4
Lsat_1_v5_gn_9_33061 Lactuca sativa HOM05D000081 ORTHO05D008417 1.5e-11 73.9 87 48.3
Duzib128G0900 Durio zibethinus HOM05D000081 ORTHO05D008417 2.0e-11 73.6 87 47.1
Medtr7g062220 Medicago truncatula HOM05D000081 ORTHO05D008417 2.0e-11 73.6 86 47.7
Os01g0972800 Oryza sativa ssp. japonica HOM05D000081 ORTHO05D008417 2.0e-11 73.6 97 45.4
PSO063G0390 Papaver somniferum HOM05D000081 ORTHO05D008417 2.0e-11 73.6 94 46.8
TPR.G40440 Trifolium pratense HOM05D000081 ORTHO05D008417 2.0e-11 73.6 84 48.8
Rhsim04G0158500 Rhododendron simsii HOM05D000081 ORTHO05D008417 3.3e-11 72.8 81 50.6
arahy.Tifrunner.gnm1.ann1.CJ9CGG Arachis hypogaea HOM05D000081 ORTHO05D008417 7.4e-11 71.6 92 44.6
Ciclev10013616m.g Citrus clementina HOM05D000081 ORTHO05D008417 7.4e-11 71.6 80 51.2
MBI05_g29696_MAGBIO Magnolia biondii HOM05D000081 ORTHO05D008417 9.7e-11 71.2 99 45.5
PSO339G6317 Papaver somniferum HOM05D000081 ORTHO05D008417 9.7e-11 71.2 84 46.4
Zm00001eb139800 Zea mays HOM05D000081 ORTHO05D008417 9.7e-11 71.2 96 45.8
Aqoxy2G02261 Aquilegia oxysepala HOM05D000081 ORTHO05D008417 1.3e-10 70.9 91 45.1
Oeu001862.1 Olea europaea HOM05D000181 ORTHO05D003134 1.3e-10 70.9 82 48.8
Hma1.2p1_0936F.1_g238870 Hydrangea macrophylla HOM05D000081 ORTHO05D008417 1.7e-10 70.5 78 52.6
Oeu038420.1 Olea europaea HOM05D000081 ORTHO05D008417 1.7e-10 70.5 83 49.4
HanXRQChr16g0499001 Helianthus annuus HOM05D000081 ORTHO05D008417 2.2e-10 70.1 87 44.8
Nitab4.5_0008284g0010 Nicotiana tabacum HOM05D000081 ORTHO05D008417 2.2e-10 70.1 88 40.9
Nitab4.5_0000705g0150 Nicotiana tabacum HOM05D000081 ORTHO05D008417 4.8e-10 68.9 91 40.7
SGA_v2.0_scaffold126G33773 Striga asiatica HOM05D000081 ORTHO05D008417 4.8e-10 68.9 81 46.9
THA.LOC104827022 Tarenaya hassleriana HOM05D000081 ORTHO05D008417 6.3e-10 68.6 87 48.3
vmacro08644 Vaccinium macrocarpon HOM05D000081 ORTHO05D008417 6.3e-10 68.6 88 44.3
CANSAT11G0955 Cannabis sativa HOM05D000081 ORTHO05D008417 1.1e-09 67.8 93 44.1
CAN.G1293.3 Capsicum annuum HOM05D000081 ORTHO05D008417 6.9e-09 65.1 151 32.5
Migut.J00318 Erythranthe guttata HOM05D000081 ORTHO05D008417 1.2e-08 64.3 106 40.6
Haze_20730 Corylus avellana HOM05D000081 ORTHO05D008417 1.5e-08 63.9 96 41.7
Gohir.D09G150400 Gossypium hirsutum HOM05D000081 ORTHO05D008417 1.5e-08 63.9 81 45.7
Gorai.006G171700 Gossypium raimondii HOM05D000081 ORTHO05D008417 1.5e-08 63.9 81 45.7
SEGI_11981 Sequoiadendron giganteum HOM05D000081 ORTHO05D008417 1.5e-08 63.9 117 38.5
SEGI_14586 Sequoiadendron giganteum HOM05D000081 ORTHO05D008417 1.5e-08 63.9 117 38.5
CSS0026457 Camellia sinensis var. sinensis HOM05D000081 ORTHO05D008417 2.6e-08 63.2 75 50.7
Solyc09g010960.3 Solanum lycopersicum HOM05D000081 ORTHO05D008417 2.6e-08 63.2 37 67.6
Sopen09g005680 Solanum pennellii HOM05D000081 ORTHO05D008417 2.6e-08 63.2 37 67.6
Gohir.A09G154900 Gossypium hirsutum HOM05D000081 ORTHO05D008417 3.4e-08 62.8 81 44.4
SEGI_28147 Sequoiadendron giganteum HOM05D000081 ORTHO05D008417 5.9e-08 62.0 107 38.3
Sed0001321 Sechium edule HOM05D000081 ORTHO05D008417 7.7e-08 61.6 40 67.5
AL8G17120 Arabidopsis lyrata HOM05D000081 ORTHO05D008417 1.3e-07 60.8 83 45.8
AL97U10020 Arabidopsis lyrata HOM05D000081 ORTHO05D008417 1.3e-07 60.8 83 45.8
MSTRG.5653 Avicennia marina HOM05D000081 ORTHO05D008417 1.3e-07 60.8 84 44.0
ECA247G0532 Erigeron canadensis HOM05D000081 ORTHO05D008417 1.3e-07 60.8 91 40.7
Sc20g0005020 Simmondsia chinensis HOM05D000081 ORTHO05D008417 3.8e-07 59.3 37 67.6
HPP92_012598 Vanilla planifolia HOM05D000081 ORTHO05D008417 3.8e-07 59.3 80 41.2
AL8G17140 Arabidopsis lyrata HOM05D000081 ORTHO05D008417 5.0e-07 58.9 80 43.8
AL8G17150 Arabidopsis lyrata HOM05D000081 ORTHO05D008417 5.0e-07 58.9 80 43.8
AL97U10010 Arabidopsis lyrata HOM05D000081 ORTHO05D008417 5.0e-07 58.9 80 43.8
AT5G43290 Arabidopsis thaliana HOM05D000081 ORTHO05D008417 5.0e-07 58.9 80 42.5
CiPaw.10G146700 Carya illinoinensis HOM05D000081 ORTHO05D008417 5.0e-07 58.9 81 48.1
Thhalv10003250m.g Eutrema salsugineum HOM05D000081 ORTHO05D008417 5.0e-07 58.9 80 45.0
HPP92_006624 Vanilla planifolia HOM05D000081 ORTHO05D008417 5.0e-07 58.9 82 39.0
Peaxi162Scf00165g00815 Petunia axillaris HOM05D000081 ORTHO05D008417 6.5e-07 58.5 88 39.8
Sp2g08100 Schrenkiella parvula HOM05D000081 ORTHO05D008417 1.1e-06 57.8 79 44.3
TPR.G1686 Trifolium pratense HOM05D000081 ORTHO05D008417 1.1e-06 57.8 37 64.9
DCAR_028753 Daucus carota HOM05D000081 ORTHO05D008417 1.4e-06 57.4 39 61.5
A09p20260 Brassica napus HOM05D000081 ORTHO05D008417 5.5e-06 55.5 77 42.9


User provided reference genes

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