Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0835600 Oryza sativa ssp. japonica HOM05D007382 ORTHO05D009012 7.4e-145 517.3 284 100.0
Zm00001eb148770 Zea mays HOM05D007382 ORTHO05D009012 2.5e-60 236.5 292 53.1
MBI04_g28758_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 9.0e-26 121.7 139 43.9
MBI04_g38440_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 1.2e-25 121.3 139 43.9
Ciclev10012925m.g Citrus clementina HOM05D007382 ORTHO05D009012 5.9e-25 119.0 138 47.1
MD12G1130200 Malus domestica HOM05D007382 ORTHO05D009012 1.0e-24 118.2 113 47.8
CiPaw.10G139200 Carya illinoinensis HOM05D007382 ORTHO05D009012 2.9e-24 116.7 113 49.6
Potri.006G216000 Populus trichocarpa HOM05D007382 ORTHO05D009012 5.0e-24 115.9 162 42.6
Nn2g10574 Nelumbo nucifera HOM05D007382 ORTHO05D009012 1.1e-23 114.8 113 51.3
Prupe.6G245200 Prunus persica HOM05D007382 ORTHO05D009012 1.1e-23 114.8 147 44.2
Sabra06G0166500 Salix brachista HOM05D007382 ORTHO05D009012 1.1e-23 114.8 162 41.4
TAR369G0081 Trochodendron aralioides HOM05D007382 ORTHO05D009012 1.1e-23 114.8 163 41.1
TWI77G0838 Tripterygium wilfordii HOM05D007382 ORTHO05D009012 1.4e-23 114.4 115 48.7
Nn3g20330 Nelumbo nucifera HOM05D007382 ORTHO05D009012 1.9e-23 114.0 110 50.0
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 3.2e-23 113.2 156 41.0
CANSAT80G2903 Cannabis sativa HOM05D007382 ORTHO05D009012 4.2e-23 112.8 114 49.1
Lsat_1_v5_gn_2_111101 Lactuca sativa HOM05D007382 ORTHO05D009012 4.2e-23 112.8 138 45.7
Hma1.2p1_0111F.1_g053520 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 5.5e-23 112.5 137 46.0
Nitab4.5_0007103g0020 Nicotiana tabacum HOM05D007382 ORTHO05D009012 7.2e-23 112.1 116 50.0
Lsat_1_v5_gn_2_110741 Lactuca sativa HOM05D007382 ORTHO05D009012 9.4e-23 111.7 138 45.7
CSS0017861 Camellia sinensis var. sinensis HOM05D007382 ORTHO05D009012 2.1e-22 110.5 113 50.4
Nitab4.5_0000202g0370 Nicotiana tabacum HOM05D007382 ORTHO05D009012 2.1e-22 110.5 116 48.3
Cfa017470 Carpinus fangiana HOM05D007382 ORTHO05D009012 2.7e-22 110.2 123 46.3
Haze_20685 Corylus avellana HOM05D007382 ORTHO05D009012 3.6e-22 109.8 112 46.4
HanXRQChr07g0195861 Helianthus annuus HOM05D007382 ORTHO05D009012 3.6e-22 109.8 147 41.5
Hma1.2p1_0111F.1_g053480 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 3.6e-22 109.8 146 44.5
Phvul.001G173000 Phaseolus vulgaris HOM05D007382 ORTHO05D009012 4.6e-22 109.4 126 45.2
SEGI_34495 Sequoiadendron giganteum HOM05D007382 ORTHO05D009012 6.1e-22 109.0 139 46.0
RcHm_v2.0_Chr3g0468081 Rosa chinensis HOM05D007382 ORTHO05D009012 7.9e-22 108.6 137 45.3
Cc06_g15490 Coffea canephora HOM05D007382 ORTHO05D009012 1.0e-21 108.2 132 44.7
Dinv37282 Davidia involucrata HOM05D007382 ORTHO05D009012 1.0e-21 108.2 114 47.4
Lsat_1_v5_gn_2_110841 Lactuca sativa HOM05D007382 ORTHO05D009012 1.0e-21 108.2 116 49.1
VMungo1383G3160 Vigna mungo HOM05D007382 ORTHO05D009012 1.0e-21 108.2 112 47.3
Duzib093G1372 Durio zibethinus HOM05D007382 ORTHO05D009012 1.4e-21 107.8 136 43.4
AUR62036838 Chenopodium quinoa HOM05D007382 ORTHO05D009012 1.8e-21 107.5 127 44.9
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 1.8e-21 107.5 199 36.7
QL07p045887 Quercus lobata HOM05D007382 ORTHO05D009012 1.8e-21 107.5 113 46.0
Solyc07g014660.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 2.3e-21 107.1 117 49.6
Thecc.05G050100 Theobroma cacao HOM05D007382 ORTHO05D009012 2.3e-21 107.1 129 44.2
MSTRG.19120 Avicennia marina HOM05D007382 ORTHO05D009012 3.0e-21 106.7 119 47.9
FvH4_6g14870 Fragaria vesca HOM05D007382 ORTHO05D009012 3.0e-21 106.7 163 42.3
Migut.J00393 Erythranthe guttata HOM05D007382 ORTHO05D009012 3.9e-21 106.3 119 45.4
FAN05G3594 Fragaria x ananassa HOM05D007382 ORTHO05D009012 3.9e-21 106.3 145 42.8
Eucgr.A01209 Eucalyptus grandis HOM05D007382 ORTHO05D009012 5.1e-21 105.9 112 47.3
Sopen07g005520 Solanum pennellii HOM05D007382 ORTHO05D009012 5.1e-21 105.9 117 49.6
FAN09G0189 Fragaria x ananassa HOM05D007382 ORTHO05D009012 6.7e-21 105.5 140 43.6
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 6.7e-21 105.5 140 43.6
PSO384G2862 Papaver somniferum HOM05D007382 ORTHO05D009012 6.7e-21 105.5 152 41.4
Gohir.D04G117000 Gossypium hirsutum HOM05D007382 ORTHO05D009012 8.8e-21 105.1 111 49.5
Gorai.009G421900 Gossypium raimondii HOM05D007382 ORTHO05D009012 8.8e-21 105.1 111 49.5
Lj1g0005181 Lotus japonicus HOM05D007382 ORTHO05D009012 8.8e-21 105.1 123 44.7
Oeu029114.1 Olea europaea HOM05D007382 ORTHO05D009012 8.8e-21 105.1 113 48.7
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 1.5e-20 104.4 198 38.4
ATR0709G053 Amborella trichopoda HOM05D007382 ORTHO05D009012 2.0e-20 104.0 117 46.2
COL.COLO4_10307 Corchorus olitorius HOM05D007382 ORTHO05D009012 2.0e-20 104.0 121 44.6
Gohir.A04G077800 Gossypium hirsutum HOM05D007382 ORTHO05D009012 4.3e-20 102.8 111 48.6
EL10Ac7g17270 Beta vulgaris HOM05D007382 ORTHO05D009012 5.7e-20 102.4 127 43.3
Glyma.03G175900 Glycine max HOM05D007382 ORTHO05D009012 5.7e-20 102.4 122 42.6
CAN.G435.4 Capsicum annuum HOM05D007382 ORTHO05D009012 7.4e-20 102.1 115 46.1
Ah.08g212080 Amaranthus hybridus HOM05D007382 ORTHO05D009012 9.7e-20 101.7 137 43.1
Peaxi162Scf00472g00081 Petunia axillaris HOM05D007382 ORTHO05D009012 9.7e-20 101.7 117 45.3
Hund10951 Selenicereus undatus HOM05D007382 ORTHO05D009012 9.7e-20 101.7 127 44.9
Manes.09G071800 Manihot esculenta HOM05D007382 ORTHO05D009012 1.3e-19 101.3 123 43.1
SGA_v2.0_scaffold126G33863 Striga asiatica HOM05D007382 ORTHO05D009012 1.7e-19 100.9 116 47.4
PGSC0003DMG400038088 Solanum tuberosum HOM05D007382 ORTHO05D009012 2.2e-19 100.5 117 43.6
BcaB02g08277 Brassica carinata HOM05D007382 ORTHO05D009012 3.7e-19 99.8 107 43.9
ECA238G1385 Erigeron canadensis HOM05D007382 ORTHO05D009012 4.8e-19 99.4 116 42.2
Glyma.19G176400 Glycine max HOM05D007382 ORTHO05D009012 4.8e-19 99.4 126 44.4
Aa31LG10G12820 Aethionema arabicum HOM05D007382 ORTHO05D009012 6.3e-19 99.0 124 41.9
MELO3C003080.2 Cucumis melo HOM05D007382 ORTHO05D009012 6.3e-19 99.0 116 44.8
HanXRQChr10g0297271 Helianthus annuus HOM05D007382 ORTHO05D009012 6.3e-19 99.0 140 40.0
Ca_08808_v3 Cicer arietinum L. HOM05D007382 ORTHO05D009012 8.2e-19 98.6 138 39.9
ClCG04G008690 Citrullus lanatus HOM05D007382 ORTHO05D009012 1.1e-18 98.2 109 44.0
Carub.0005s2494 Capsella rubella HOM05D007382 ORTHO05D009012 1.4e-18 97.8 107 45.8
Sopen10g033880 Solanum pennellii HOM05D007382 ORTHO05D009012 1.4e-18 97.8 114 44.7
CARHR168440 Cardamine hirsuta HOM05D007382 ORTHO05D009012 1.8e-18 97.4 108 46.3
AL5G39780 Arabidopsis lyrata HOM05D007382 ORTHO05D009012 2.4e-18 97.1 107 44.9
Sp5g04630 Schrenkiella parvula HOM05D007382 ORTHO05D009012 2.4e-18 97.1 107 43.0
Solyc10g084440.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 2.4e-18 97.1 114 44.7
Sc01g0003740 Simmondsia chinensis HOM05D007382 ORTHO05D009012 6.9e-18 95.5 114 43.0
CsaV3_4G024470 Cucumis sativus L. HOM05D007382 ORTHO05D009012 9.1e-18 95.1 113 42.5
Sopen09g026050 Solanum pennellii HOM05D007382 ORTHO05D009012 1.5e-17 94.4 117 42.7
PGSC0003DMG401010988 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.5e-17 94.4 114 43.0
Medtr7g100230 Medicago truncatula HOM05D007382 ORTHO05D009012 2.0e-17 94.0 130 41.5
BcaC02g09988 Brassica carinata HOM05D007382 ORTHO05D009012 3.4e-17 93.2 107 41.1
Aqoxy5G00351 Aquilegia oxysepala HOM05D007382 ORTHO05D009012 4.5e-17 92.8 142 35.9
AT3G58090 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 5.9e-17 92.4 105 44.8
Psat7g058560 Pisum sativum HOM05D007382 ORTHO05D009012 1.3e-16 91.3 141 36.9
Sed0019756 Sechium edule HOM05D007382 ORTHO05D009012 1.7e-16 90.9 113 39.8
HPP92_019795 Vanilla planifolia HOM05D007382 ORTHO05D009012 3.8e-16 89.7 111 43.2
A04p02730 Brassica napus HOM05D000180 ORTHO05D000099 5.0e-16 89.4 99 44.4
BraA04t15999Z Brassica rapa HOM05D000180 ORTHO05D000099 5.0e-16 89.4 99 44.4
CDE05G2022 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 5.0e-16 89.4 110 43.6
VMungo1080G1211 Vigna mungo HOM05D007382 ORTHO05D009012 1.1e-15 88.2 73 50.7
Sed0025265 Sechium edule HOM05D007382 ORTHO05D009012 1.4e-15 87.8 113 41.6
PGSC0003DMG400037466 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.9e-15 87.4 120 39.2
unitig_744.g24666 Utricularia gibba HOM05D007382 ORTHO05D009012 3.2e-15 86.7 117 41.9
Medtr7g100200 Medicago truncatula HOM05D007382 ORTHO05D009012 2.1e-14 84.0 124 37.1
BolC4t24990H Brassica oleracea HOM05D000180 ORTHO05D000099 2.7e-14 83.6 99 41.4
C04p34300 Brassica napus HOM05D000180 ORTHO05D000099 4.7e-14 82.8 99 41.4
TPR.G21464 Trifolium pratense HOM05D007382 ORTHO05D009012 3.0e-13 80.1 155 34.2
PGSC0003DMG400035622 Solanum tuberosum HOM05D007382 ORTHO05D009012 5.7e-12 75.9 112 35.7
CiPaw.15G123900 Carya illinoinensis HOM05D007382 ORTHO05D009012 3.7e-11 73.2 167 31.1
CDE09G1151 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 3.7e-11 73.2 121 31.4
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 3.7e-11 73.2 191 31.4
Lalb_Chr20g0113021 Lupinus albus HOM05D007382 ORTHO05D009012 4.8e-11 72.8 178 31.5
SEGI_03776 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 1.8e-10 70.9 59 54.2
CDE12G0689 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 9.1e-10 68.6 75 38.7
ATR0665G317 Amborella trichopoda HOM05D007382 ORTHO05D009012 2.0e-09 67.4 83 45.8
ATR0829G079 Amborella trichopoda HOM05D016889 ORTHO05D026570 2.0e-09 67.4 54 57.4
Lalb_Chr25g0289341 Lupinus albus HOM05D007382 ORTHO05D009012 4.5e-09 66.2 75 45.3
CBR_g41746 Chara braunii HOM05D007382 ORTHO05D009012 1.5e-07 61.2 50 52.0
SEGI_22784 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 2.5e-07 60.5 58 46.6
Pp3c14_21840 Physcomitrium patens HOM05D016889 ORTHO05D009012 3.2e-07 60.1 99 33.3
SMO147G0006 Selaginella moellendorffii HOM05D016889 ORTHO05D026570 9.4e-07 58.5 57 45.6
Pp3c17_18030 Physcomitrium patens HOM05D016889 ORTHO05D026570 2.7e-06 57.0 83 37.3
TAR633G0943 Trochodendron aralioides HOM05D007382 ORTHO05D009012 8.0e-06 55.5 59 40.7


User provided reference genes

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