Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0823400 Oryza sativa ssp. japonica HOM05D006353 ORTHO05D007993 8.4e-202 706.8 364 100.0
Zm00001eb368790 Zea mays HOM05D006353 ORTHO05D007993 5.6e-105 385.2 371 61.7
HPP92_022856 Vanilla planifolia HOM05D006353 ORTHO05D007993 7.2e-36 155.6 358 34.9
TAR636G2144 Trochodendron aralioides HOM05D006353 ORTHO05D007993 5.7e-33 146.0 370 33.5
GSVIVG01030203001 Vitis vinifera HOM05D006353 ORTHO05D007993 2.7e-30 137.1 362 31.8
Thecc.04G154100 Theobroma cacao HOM05D006353 ORTHO05D007993 2.1e-27 127.5 354 33.3
Zm00001eb050050 Zea mays HOM05D006353 ORTHO05D007993 2.0e-25 120.9 123 65.9
Atru.chr8.2382 Acer truncatum HOM05D006353 ORTHO05D007993 4.9e-24 116.3 345 30.4
Nn2g10337 Nelumbo nucifera HOM05D006353 ORTHO05D007993 1.4e-23 114.8 366 30.6
Dinv25324 Davidia involucrata HOM05D006353 ORTHO05D007993 1.9e-23 114.4 351 29.6
PSO339G6092 Papaver somniferum HOM05D006353 ORTHO05D007993 1.2e-22 111.7 376 27.4
PSO384G2070 Papaver somniferum HOM05D006353 ORTHO05D007993 6.0e-22 109.4 375 27.7
MSTRG.18951 Avicennia marina HOM05D006353 ORTHO05D007993 2.3e-21 107.5 348 30.2
Duzib212G0771 Durio zibethinus HOM05D006353 ORTHO05D007993 2.3e-21 107.5 355 32.1
Actinidia11518 Actinidia chinensis HOM05D006353 ORTHO05D007993 3.9e-21 106.7 360 29.4
AUR62006369 Chenopodium quinoa HOM05D006353 ORTHO05D007993 5.0e-21 106.3 354 31.6
Potri.001G189400 Populus trichocarpa HOM05D006831 ORTHO05D008256 6.6e-21 105.9 377 28.4
Sabra04G0151900 Salix brachista HOM05D006353 ORTHO05D007993 8.6e-21 105.5 354 30.8
QL05p020342 Quercus lobata HOM05D006831 ORTHO05D008256 1.9e-20 104.4 368 28.5
Sc07g0005810 Simmondsia chinensis HOM05D006353 ORTHO05D007993 1.9e-20 104.4 351 29.6
C04p09030 Brassica napus HOM05D006353 ORTHO05D007993 3.3e-20 103.6 363 30.6
BolC4t22493H Brassica oleracea HOM05D006353 ORTHO05D007993 3.3e-20 103.6 363 30.6
Gohir.A10G149700 Gossypium hirsutum HOM05D006353 ORTHO05D007993 3.3e-20 103.6 360 30.3
MBI04_g30107_MAGBIO Magnolia biondii HOM05D006831 ORTHO05D008256 5.6e-20 102.8 370 28.4
vmacro18857 Vaccinium macrocarpon HOM05D006831 ORTHO05D008256 1.2e-19 101.7 376 29.5
Cfa017056 Carpinus fangiana HOM05D006353 ORTHO05D007993 1.6e-19 101.3 359 29.8
Migut.J00057 Erythranthe guttata HOM05D006353 ORTHO05D007993 1.6e-19 101.3 364 28.6
Thhalv10016859m.g Eutrema salsugineum HOM05D006353 ORTHO05D007993 2.1e-19 100.9 340 30.6
Haze_21157 Corylus avellana HOM05D006353 ORTHO05D007993 2.8e-19 100.5 313 32.3
COL.COLO4_30498 Corchorus olitorius HOM05D006831 ORTHO05D008256 3.6e-19 100.1 373 27.3
Potri.016G134500 Populus trichocarpa HOM05D006353 ORTHO05D007993 3.6e-19 100.1 352 29.8
Cfa003655 Carpinus fangiana HOM05D006831 ORTHO05D008256 4.7e-19 99.8 363 29.2
Gorai.011G129000 Gossypium raimondii HOM05D006353 ORTHO05D007993 4.7e-19 99.8 360 30.0
Prupe.3G060100 Prunus persica HOM05D006831 ORTHO05D008256 6.2e-19 99.4 374 28.1
DCAR_016191 Daucus carota HOM05D006831 ORTHO05D008256 1.1e-18 98.6 369 27.1
Dinv30442 Davidia involucrata HOM05D006831 ORTHO05D008256 1.4e-18 98.2 370 26.5
Actinidia21708 Actinidia chinensis HOM05D006831 ORTHO05D008256 1.8e-18 97.8 378 29.1
Rhsim05G0229500 Rhododendron simsii HOM05D006353 ORTHO05D007993 1.8e-18 97.8 356 29.8
BcaB02g09176 Brassica carinata HOM05D006353 ORTHO05D007993 2.3e-18 97.4 364 30.2
Sp4g20840 Schrenkiella parvula HOM05D006353 ORTHO05D007993 2.3e-18 97.4 343 30.0
Gohir.D10G117100 Gossypium hirsutum HOM05D006353 ORTHO05D007993 3.1e-18 97.1 360 29.7
TWI74G0177 Tripterygium wilfordii HOM05D006353 ORTHO05D007993 3.1e-18 97.1 362 27.9
BcaC02g12001 Brassica carinata HOM05D006353 ORTHO05D007993 4.0e-18 96.7 362 29.8
C03p25230 Brassica napus HOM05D006353 ORTHO05D007993 5.2e-18 96.3 338 30.2
Eucgr.K01277 Eucalyptus grandis HOM05D006353 ORTHO05D007993 5.2e-18 96.3 386 30.6
Oeu026960.1 Olea europaea HOM05D006353 ORTHO05D007993 5.2e-18 96.3 357 27.5
Atru.chr1.3517 Acer truncatum HOM05D006831 ORTHO05D008256 6.8e-18 95.9 376 27.4
EL10Ac7g17070 Beta vulgaris HOM05D006353 ORTHO05D007993 6.8e-18 95.9 355 30.1
AUR62031907 Chenopodium quinoa HOM05D006831 ORTHO05D008256 6.8e-18 95.9 368 28.0
Thecc.06G098700 Theobroma cacao HOM05D006831 ORTHO05D008256 6.8e-18 95.9 367 27.5
AT2G38500 Arabidopsis thaliana HOM05D006353 ORTHO05D007993 8.9e-18 95.5 361 29.6
Eucgr.F03071 Eucalyptus grandis HOM05D006831 ORTHO05D008256 8.9e-18 95.5 377 28.6
BraA03t11371Z Brassica rapa HOM05D006353 ORTHO05D007993 1.2e-17 95.1 338 30.2
CANSAT56G0873 Cannabis sativa HOM05D006831 ORTHO05D008256 1.2e-17 95.1 381 26.2
Nn6g35309 Nelumbo nucifera HOM05D006831 ORTHO05D008256 1.2e-17 95.1 367 27.2
BcaC01g05532 Brassica carinata HOM05D006353 ORTHO05D007993 1.5e-17 94.7 334 30.2
BolC3t14918H Brassica oleracea HOM05D006353 ORTHO05D007993 1.5e-17 94.7 334 30.2
MBI03_g38281_MAGBIO Magnolia biondii HOM05D006353 ORTHO05D007993 1.5e-17 94.7 179 32.4
A05p07550 Brassica napus HOM05D006353 ORTHO05D007993 2.0e-17 94.4 363 30.0
BraA05t19722Z Brassica rapa HOM05D006353 ORTHO05D007993 2.0e-17 94.4 363 30.0
Lj5A54G57 Lonicera japonica HOM05D006831 ORTHO05D008256 2.0e-17 94.4 364 26.4
vmacro20360 Vaccinium macrocarpon HOM05D006353 ORTHO05D007993 2.0e-17 94.4 360 28.6
Duzib235G1306 Durio zibethinus HOM05D006831 ORTHO05D008256 2.6e-17 94.0 367 26.7
TAR626G1633 Trochodendron aralioides HOM05D006831 ORTHO05D008256 2.6e-17 94.0 339 31.6
A03p21360 Brassica napus HOM05D006353 ORTHO05D007993 3.4e-17 93.6 338 30.2
Solyc03g120970.3 Solanum lycopersicum HOM05D006831 ORTHO05D008256 4.4e-17 93.2 371 26.1
BcaB01g03677 Brassica carinata HOM05D006353 ORTHO05D007993 5.8e-17 92.8 340 29.1
CiPaw.01G232000 Carya illinoinensis HOM05D006831 ORTHO05D008256 5.8e-17 92.8 384 27.9
CiPaw.09G219300 Carya illinoinensis HOM05D006353 ORTHO05D007993 5.8e-17 92.8 362 29.0
THA.LOC104806639 Tarenaya hassleriana HOM05D006353 ORTHO05D007993 5.8e-17 92.8 300 30.0
ECA247G2417 Erigeron canadensis HOM05D006831 ORTHO05D008256 7.5e-17 92.4 373 24.9
Gorai.011G071900 Gossypium raimondii HOM05D006831 ORTHO05D008256 7.5e-17 92.4 376 27.4
Peaxi162Scf00038g00918 Petunia axillaris HOM05D006831 ORTHO05D008256 7.5e-17 92.4 377 24.9
CARHR133200 Cardamine hirsuta HOM05D006353 ORTHO05D007993 9.8e-17 92.0 343 29.2
MD09G1204500 Malus domestica HOM05D006831 ORTHO05D008256 9.8e-17 92.0 373 27.1
Sopen03g039800 Solanum pennellii HOM05D006831 ORTHO05D008256 1.3e-16 91.7 371 26.1
Sabra11G0033200 Salix brachista HOM05D006831 ORTHO05D008256 2.2e-16 90.9 375 26.4
Ciclev10025849m.g Citrus clementina HOM05D006831 ORTHO05D008256 3.7e-16 90.1 373 26.3
Sabra01G0151300 Salix brachista HOM05D006831 ORTHO05D008256 3.7e-16 90.1 377 26.3
Ciclev10012094m.g Citrus clementina HOM05D006353 ORTHO05D007993 4.9e-16 89.7 357 30.0
Haze_06254 Corylus avellana HOM05D006831 ORTHO05D008256 4.9e-16 89.7 324 28.7
QL07p032560 Quercus lobata HOM05D006353 ORTHO05D007993 4.9e-16 89.7 322 29.5
TWI12G0407 Tripterygium wilfordii HOM05D006831 ORTHO05D008256 4.9e-16 89.7 382 27.5
Gohir.A10G066100 Gossypium hirsutum HOM05D006831 ORTHO05D008256 6.4e-16 89.4 376 26.9
TAR383G0884 Trochodendron aralioides HOM05D006831 ORTHO05D008256 6.4e-16 89.4 365 27.1
PGR102G2866 Punica granatum HOM05D006831 ORTHO05D008256 8.3e-16 89.0 375 26.4
Rhsim08G0227100 Rhododendron simsii HOM05D006831 ORTHO05D008256 1.1e-15 88.6 392 28.3
Aa31LG5G23800 Aethionema arabicum HOM05D006353 ORTHO05D007993 1.4e-15 88.2 338 29.3
CiPaw.02G146100 Carya illinoinensis HOM05D006831 ORTHO05D008256 1.4e-15 88.2 368 27.7
AL4G35790 Arabidopsis lyrata HOM05D006353 ORTHO05D007993 1.9e-15 87.8 361 28.5
Oeu050599.1 Olea europaea HOM05D006831 ORTHO05D008256 1.9e-15 87.8 370 26.2
Gohir.D10G067400 Gossypium hirsutum HOM05D006831 ORTHO05D008256 2.4e-15 87.4 376 26.6
Medtr8g014330 Medicago truncatula HOM05D006831 ORTHO05D008256 3.2e-15 87.0 343 27.4
Zm00001eb080750 Zea mays HOM05D006353 ORTHO05D007993 3.2e-15 87.0 191 43.5
CANSAT35G0573 Cannabis sativa HOM05D006353 ORTHO05D007993 4.1e-15 86.7 345 26.1
Carub.0004s2049 Capsella rubella HOM05D006353 ORTHO05D007993 4.1e-15 86.7 359 28.7
HanXRQChr14g0433401 Helianthus annuus HOM05D006353 ORTHO05D007993 4.1e-15 86.7 348 27.3
PGSC0003DMG400002528 Solanum tuberosum HOM05D006831 ORTHO05D008256 4.1e-15 86.7 377 25.2
Zm00001eb287510 Zea mays HOM05D006353 ORTHO05D007993 4.1e-15 86.7 152 45.4
Phvul.010G145700 Phaseolus vulgaris HOM05D006831 ORTHO05D008256 7.1e-15 85.9 371 26.7
Prupe.6G291400 Prunus persica HOM05D006353 ORTHO05D007993 7.1e-15 85.9 374 28.3
RcHm_v2.0_Chr2g0140341 Rosa chinensis HOM05D006831 ORTHO05D008256 9.2e-15 85.5 371 26.4
Potri.011G047800 Populus trichocarpa HOM05D006831 ORTHO05D008256 1.2e-14 85.1 369 25.2
FAN05G2796 Fragaria x ananassa HOM05D006831 ORTHO05D008256 2.7e-14 84.0 372 26.1
Hma1.2p1_0430F.1_g151466 Hydrangea macrophylla HOM05D006831 ORTHO05D008256 2.7e-14 84.0 368 26.9
FvH4_6g32300 Fragaria vesca HOM05D006831 ORTHO05D008256 3.5e-14 83.6 372 26.1
Lsat_1_v5_gn_8_107941 Lactuca sativa HOM05D006353 ORTHO05D007993 3.5e-14 83.6 363 26.7
ECA236G3817 Erigeron canadensis HOM05D006353 ORTHO05D007993 4.6e-14 83.2 359 25.3
HanXRQChr10g0313251 Helianthus annuus HOM05D006831 ORTHO05D008256 6.0e-14 82.8 374 25.9
Duzib151G0311 Durio zibethinus HOM05D006353 ORTHO05D007993 7.8e-14 82.4 281 31.3
ECA248G0672 Erigeron canadensis HOM05D006353 ORTHO05D007993 7.8e-14 82.4 360 26.9
Lsat_1_v5_gn_1_36980 Lactuca sativa HOM05D006831 ORTHO05D008256 7.8e-14 82.4 378 24.3
MSTRG.11030 Avicennia marina HOM05D006831 ORTHO05D008256 1.0e-13 82.0 370 24.9
Medtr7g072635 Medicago truncatula HOM05D006353 ORTHO05D007993 1.0e-13 82.0 355 27.0
Medtr7g072870 Medicago truncatula HOM05D006353 ORTHO05D007993 1.0e-13 82.0 355 27.0
Lalb_Chr19g0124031 Lupinus albus HOM05D006353 ORTHO05D007993 1.3e-13 81.6 354 28.5
Manes.11G034300 Manihot esculenta HOM05D006831 ORTHO05D008256 1.3e-13 81.6 295 26.8
CSS0001064 Camellia sinensis var. sinensis HOM05D006353 ORTHO05D007993 2.3e-13 80.9 313 27.8
CsaV3_3G023650 Cucumis sativus L. HOM05D006831 ORTHO05D008256 3.0e-13 80.5 313 26.2
CSS0014632 Camellia sinensis var. sinensis HOM05D006831 ORTHO05D008256 3.9e-13 80.1 373 26.3
DCAR_018544 Daucus carota HOM05D006353 ORTHO05D007993 3.9e-13 80.1 257 31.5
RcHm_v2.0_Chr3g0460831 Rosa chinensis HOM05D006353 ORTHO05D007993 3.9e-13 80.1 353 26.3
CAN.G1143.6 Capsicum annuum HOM05D006831 ORTHO05D008256 6.6e-13 79.3 369 24.9
Aqoxy7G01449 Aquilegia oxysepala HOM05D006831 ORTHO05D008256 8.6e-13 79.0 378 25.4
FAN02G3719 Fragaria x ananassa HOM05D006831 ORTHO05D008256 1.1e-12 78.6 371 25.1
Gohir.A02G117700 Gossypium hirsutum HOM05D006831 ORTHO05D008256 1.9e-12 77.8 375 24.3
HanXRQChr16g0509461 Helianthus annuus HOM05D006353 ORTHO05D007993 1.9e-12 77.8 363 25.1
BcaB01g03678 Brassica carinata HOM05D006353 ORTHO05D007993 2.5e-12 77.4 340 29.1
CSS0032329 Camellia sinensis var. sinensis HOM05D006353 ORTHO05D007993 5.6e-12 76.3 295 27.1
Sed0002935 Sechium edule HOM05D006353 ORTHO05D007993 5.6e-12 76.3 364 27.5
ClCG00G002730 Citrullus lanatus HOM05D006831 ORTHO05D008256 7.3e-12 75.9 301 28.2
ClCG07G013280 Citrullus lanatus HOM05D006831 ORTHO05D008256 7.3e-12 75.9 301 28.2
Cc04_g02630 Coffea canephora HOM05D006831 ORTHO05D008256 7.3e-12 75.9 374 24.1
Gohir.D03G058400 Gossypium hirsutum HOM05D006831 ORTHO05D008256 7.3e-12 75.9 375 24.5
Gorai.003G062200 Gossypium raimondii HOM05D006831 ORTHO05D008256 7.3e-12 75.9 375 24.5
SalBow5G5035 Salvia bowleyana HOM05D006353 ORTHO05D007993 9.5e-12 75.5 348 25.3
Sopen09g010850 Solanum pennellii HOM05D006353 ORTHO05D007993 9.5e-12 75.5 319 26.3
FAN14G1280 Fragaria x ananassa HOM05D006831 ORTHO05D008256 1.2e-11 75.1 367 25.3
SalBow5G5483 Salvia bowleyana HOM05D006353 ORTHO05D007993 1.2e-11 75.1 348 25.3
Sc20g0006870 Simmondsia chinensis HOM05D006353 ORTHO05D007993 1.2e-11 75.1 312 27.6
PGSC0003DMG400004416 Solanum tuberosum HOM05D006353 ORTHO05D007993 1.6e-11 74.7 329 27.4
VMungo1383G2355 Vigna mungo HOM05D006353 ORTHO05D007993 2.1e-11 74.3 299 29.8
Sed0018864 Sechium edule HOM05D006831 ORTHO05D008256 2.8e-11 73.9 303 28.7
GSVIVG01017000001 Vitis vinifera HOM05D006831 ORTHO05D008256 2.8e-11 73.9 233 25.8
HanXRQChr02g0032201 Helianthus annuus HOM05D006831 ORTHO05D008256 3.6e-11 73.6 369 23.8
Phvul.008G084100 Phaseolus vulgaris HOM05D006353 ORTHO05D007993 3.6e-11 73.6 353 28.3
VMungo0331G1511 Vigna mungo HOM05D006831 ORTHO05D008256 3.6e-11 73.6 382 26.4
TPR.G29201 Trifolium pratense HOM05D006831 ORTHO05D008256 4.7e-11 73.2 377 24.4
MD12G1185800 Malus domestica HOM05D006353 ORTHO05D007993 6.2e-11 72.8 364 26.4
Actinidia32697 Actinidia chinensis HOM05D006831 ORTHO05D008256 8.1e-11 72.4 371 26.7
arahy.Tifrunner.gnm1.ann1.4LXS91 Arachis hypogaea HOM05D006831 ORTHO05D008256 8.1e-11 72.4 381 24.9
Glyma.08G201400 Glycine max HOM05D006831 ORTHO05D008256 1.4e-10 71.6 370 26.8
Lj3g0006655 Lotus japonicus HOM05D006831 ORTHO05D008256 1.4e-10 71.6 382 23.8
Ah.08g209640 Amaranthus hybridus HOM05D006353 ORTHO05D007993 1.8e-10 71.2 275 30.2
Lj1g0007888 Lotus japonicus HOM05D006353 ORTHO05D007993 2.3e-10 70.9 348 26.7
FAN09G0411 Fragaria x ananassa HOM05D006353 ORTHO05D007993 4.0e-10 70.1 360 25.8
Phvul.005G166600 Phaseolus vulgaris HOM05D006831 ORTHO05D008256 4.0e-10 70.1 357 24.4
EL10Ac9g21213 Beta vulgaris HOM05D006831 ORTHO05D008256 5.2e-10 69.7 382 25.7
arahy.Tifrunner.gnm1.ann1.U3LBHC Arachis hypogaea HOM05D006831 ORTHO05D008256 8.9e-10 68.9 380 24.7
AUR62022199 Chenopodium quinoa HOM05D006831 ORTHO05D008256 8.9e-10 68.9 298 28.9
AUR62029702 Chenopodium quinoa HOM05D006353 ORTHO05D007993 1.5e-09 68.2 278 29.1
HPP92_006371 Vanilla planifolia HOM05D006831 ORTHO05D008256 2.0e-09 67.8 361 26.0
Glyma.07G015900 Glycine max HOM05D006831 ORTHO05D008256 2.6e-09 67.4 373 25.7
Hund19788 Selenicereus undatus HOM05D006353 ORTHO05D007993 2.6e-09 67.4 318 29.9
VMungo1080G0645 Vigna mungo HOM05D006831 ORTHO05D008256 2.6e-09 67.4 356 24.4
FAN05G4939 Fragaria x ananassa HOM05D006353 ORTHO05D007993 4.4e-09 66.6 360 25.6
Lsat_1_v5_gn_5_134400 Lactuca sativa HOM05D006831 ORTHO05D008256 7.6e-09 65.9 298 24.8
Manes.09G116500 Manihot esculenta HOM05D006353 ORTHO05D007993 9.9e-09 65.5 355 26.5
Glyma.18G215200 Glycine max HOM05D006353 ORTHO05D007993 1.3e-08 65.1 354 26.0
Zm00001eb080740 Zea mays HOM05D006353 ORTHO05D007993 1.3e-08 65.1 115 45.2
Ca_23268_v3 Cicer arietinum L. HOM05D006831 ORTHO05D008256 4.9e-08 63.2 323 24.5
Lalb_Chr04g0262951 Lupinus albus HOM05D006831 ORTHO05D008256 6.4e-08 62.8 365 23.3
arahy.Tifrunner.gnm1.ann1.FA4IPG Arachis hypogaea HOM05D006353 ORTHO05D007993 1.9e-07 61.2 356 26.1
Ah.01g022020 Amaranthus hybridus HOM05D006831 ORTHO05D008256 2.4e-07 60.8 297 30.0
arahy.Tifrunner.gnm1.ann1.0YL58U Arachis hypogaea HOM05D006353 ORTHO05D007993 2.4e-07 60.8 356 26.1
PSO210G4514 Papaver somniferum HOM05D006831 ORTHO05D008256 2.4e-07 60.8 413 22.0
Cpa.g.sc109.6 Carica papaya HOM05D006831 ORTHO05D008256 3.2e-07 60.5 288 25.3
Nitab4.5_0012387g0010 Nicotiana tabacum HOM05D006831 ORTHO05D008256 3.2e-07 60.5 364 23.9
Dinv11379 Davidia involucrata HOM05D006353 ORTHO05D007993 5.4e-07 59.7 212 28.3
THA.LOC104801499 Tarenaya hassleriana HOM05D006831 ORTHO05D008256 9.2e-07 58.9 344 26.2
PSO210G6112 Papaver somniferum HOM05D006831 ORTHO05D008256 1.2e-06 58.5 414 22.0
Aa31LG4G70 Aethionema arabicum HOM05D006831 ORTHO05D008256 2.1e-06 57.8 365 25.5
FvH4_6g10130 Fragaria vesca HOM05D006353 ORTHO05D007993 3.5e-06 57.0 369 25.2
FAN14G4939 Fragaria x ananassa HOM05D006353 ORTHO05D007993 3.5e-06 57.0 369 25.2
MBI04_g17294_MAGBIO Magnolia biondii HOM05D006831 ORTHO05D008256 4.6e-06 56.6 87 36.8


User provided reference genes

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