Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0816500 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 2.5e-141 505.4 246 100.0
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 6.1e-87 324.7 244 71.7
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 5.7e-85 318.2 244 70.1
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 6.3e-84 314.7 244 68.9
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 1.6e-82 310.1 224 71.9
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 1.0e-81 307.4 257 63.4
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 2.2e-81 306.2 244 67.2
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 2.2e-81 306.2 244 66.0
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 3.8e-81 305.4 244 65.6
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 1.5e-80 303.5 244 65.6
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 2.5e-80 302.8 244 64.3
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 4.2e-80 302.0 244 65.2
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 4.2e-80 302.0 244 65.2
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 4.2e-80 302.0 244 65.2
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 5.5e-80 301.6 244 64.8
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 1.2e-79 300.4 244 64.3
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 1.6e-79 300.1 244 63.5
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 2.1e-79 299.7 244 63.9
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 2.1e-79 299.7 244 64.3
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 2.1e-79 299.7 244 64.3
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 2.1e-79 299.7 244 64.3
GSVIVG01006792001 Vitis vinifera HOM05D002352 ORTHO05D003724 2.1e-79 299.7 244 63.9
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 2.7e-79 299.3 245 64.1
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 2.7e-79 299.3 244 64.8
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 2.7e-79 299.3 245 66.1
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 3.6e-79 298.9 239 66.1
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 3.6e-79 298.9 244 63.5
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 3.6e-79 298.9 244 65.2
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 3.6e-79 298.9 244 64.8
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 4.7e-79 298.5 244 63.9
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 4.7e-79 298.5 244 64.3
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 4.7e-79 298.5 244 64.3
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 6.1e-79 298.1 244 64.3
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 6.1e-79 298.1 244 63.9
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 6.1e-79 298.1 244 64.8
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 6.1e-79 298.1 244 64.8
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 6.1e-79 298.1 244 63.9
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 6.1e-79 298.1 244 63.9
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 1.0e-78 297.4 244 63.9
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 1.4e-78 297.0 244 64.8
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 1.8e-78 296.6 244 63.1
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 2.3e-78 296.2 244 63.1
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 2.3e-78 296.2 244 63.9
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 3.0e-78 295.8 244 63.9
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 3.0e-78 295.8 244 64.8
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 3.0e-78 295.8 244 63.1
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 4.0e-78 295.4 244 63.1
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 4.0e-78 295.4 244 63.9
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 4.0e-78 295.4 244 63.5
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 5.2e-78 295.0 244 63.1
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 5.2e-78 295.0 244 62.7
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 5.2e-78 295.0 244 63.5
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 5.2e-78 295.0 244 63.1
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 5.2e-78 295.0 245 63.7
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 6.8e-78 294.7 244 62.3
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 6.8e-78 294.7 244 62.3
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 6.8e-78 294.7 244 62.3
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 6.8e-78 294.7 244 62.3
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 8.8e-78 294.3 244 61.9
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 8.8e-78 294.3 244 63.5
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 1.2e-77 293.9 244 62.3
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 1.2e-77 293.9 243 63.8
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 1.2e-77 293.9 244 62.3
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.2e-77 293.9 244 62.3
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.2e-77 293.9 244 62.3
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 1.2e-77 293.9 244 62.3
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 1.5e-77 293.5 244 63.5
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 1.5e-77 293.5 244 63.1
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 1.5e-77 293.5 244 63.1
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 2.0e-77 293.1 244 62.3
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 2.0e-77 293.1 244 63.1
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 2.0e-77 293.1 244 62.7
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 2.0e-77 293.1 244 62.7
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 2.0e-77 293.1 244 62.3
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 2.6e-77 292.7 244 62.3
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 2.6e-77 292.7 244 62.3
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 3.4e-77 292.4 244 62.7
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 3.4e-77 292.4 238 64.3
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 4.4e-77 292.0 250 62.0
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 4.4e-77 292.0 244 62.3
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 5.7e-77 291.6 244 61.5
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 5.7e-77 291.6 244 63.1
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 7.5e-77 291.2 244 61.9
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 9.8e-77 290.8 244 62.3
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 9.8e-77 290.8 244 63.1
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 9.8e-77 290.8 244 61.9
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 1.3e-76 290.4 244 61.5
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.3e-76 290.4 244 61.5
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 2.8e-76 289.3 244 61.5
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 2.8e-76 289.3 244 62.3
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 2.8e-76 289.3 244 61.1
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 2.8e-76 289.3 244 61.5
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 4.8e-76 288.5 244 61.1
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 4.8e-76 288.5 244 61.1
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 4.8e-76 288.5 244 61.1
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 4.8e-76 288.5 244 61.1
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 4.8e-76 288.5 244 61.5
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 4.8e-76 288.5 244 62.7
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 4.8e-76 288.5 234 65.0
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 6.3e-76 288.1 244 60.7
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 8.3e-76 287.7 244 61.5
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 1.8e-75 286.6 244 61.1
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 2.4e-75 286.2 244 61.1
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 3.1e-75 285.8 244 59.0
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 5.4e-75 285.0 244 60.7
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 1.2e-74 283.9 244 60.7
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 1.2e-74 283.9 239 62.8
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 3.5e-74 282.3 244 60.2
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 4.5e-74 282.0 262 58.8
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 7.7e-74 281.2 291 54.6
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 2.9e-73 279.3 268 57.1
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 3.2e-72 275.8 244 59.4
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 9.4e-72 274.2 244 59.4
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 4.7e-71 271.9 241 59.8
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 5.2e-70 268.5 244 57.4
HPP92_018074 Vanilla planifolia HOM05D002352 ORTHO05D003724 2.6e-69 266.2 193 71.0
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 9.8e-69 264.2 242 55.8
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 3.7e-68 262.3 275 53.1
Oeu043712.2 Olea europaea HOM05D002352 ORTHO05D003724 1.1e-64 250.8 249 55.0
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 1.0e-62 244.2 209 60.3
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 6.8e-62 241.5 202 64.4
SHI23474 Sapria himalayana HOM05D002352 ORTHO05D003724 4.4e-61 238.8 244 52.9
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 2.2e-60 236.5 205 61.5
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 2.2e-60 236.5 203 62.6
Eucgr.F03893 Eucalyptus grandis HOM05D002352 ORTHO05D003724 2.7e-58 229.6 150 74.7
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 2.7e-58 229.6 200 61.5
Lj1A1209T60 Lonicera japonica HOM05D002352 ORTHO05D003724 3.0e-57 226.1 150 72.0
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 8.0e-55 218.0 198 59.6
Lalb_Chr21g0313521 Lupinus albus HOM05D002352 ORTHO05D003724 3.4e-53 212.6 149 69.8
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 4.9e-52 208.8 246 46.7
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 1.2e-50 204.1 181 60.8
Rhsim07G0137600 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.1e-48 197.6 197 53.3
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 7.5e-45 184.9 244 49.6
Hma1.2p1_1971F.1_g309590 Hydrangea macrophylla HOM05D002352 ORTHO05D003724 3.1e-30 136.3 112 59.8
Lj1g0001052 Lotus japonicus HOM05D002352 ORTHO05D003724 8.4e-28 128.3 114 53.5
MCO15G118 Micromonas commoda HOM05D002352 ORTHO05D003724 1.8e-22 110.5 256 30.1
Cre03.g149800 Chlamydomonas reinhardtii HOM05D002352 ORTHO05D003724 2.4e-22 110.2 250 28.4
Medtr8g027640 Medicago truncatula HOM05D002352 ORTHO05D003724 2.4e-22 110.2 106 55.7
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 5.4e-19 99.0 114 52.6
Medtr8g026860 Medicago truncatula HOM05D002352 ORTHO05D003724 5.1e-17 92.4 125 42.4
Actinidia28877 Actinidia chinensis HOM05D002352 ORTHO05D003724 1.3e-15 87.8 91 52.7
Lj1A1209G64 Lonicera japonica HOM05D002352 ORTHO05D034960 4.8e-15 85.9 63 68.3
Cfa027164 Carpinus fangiana HOM05D002352 ORTHO05D003724 8.1e-15 85.1 226 30.1
Lalb_Chr21g0313511 Lupinus albus HOM05D002352 ORTHO05D003724 8.1e-15 85.1 65 64.6
Actinidia39444 Actinidia chinensis HOM05D002352 ORTHO05D003724 9.0e-14 81.6 55 65.5
vmacro01392 Vaccinium macrocarpon HOM05D002352 ORTHO05D034960 8.4e-12 75.1 147 36.7
PRCOL_00006063 Prasinoderma coloniale HOM05D002352 ORTHO05D003724 5.1e-09 65.9 134 32.8
RhsimUnG0099400 Rhododendron simsii HOM05D002352 ORTHO05D003724 3.3e-08 63.2 44 59.1
Lj2C285T4 Lonicera japonica HOM05D002352 ORTHO05D003724 7.4e-08 62.0 41 65.9


User provided reference genes

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