Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 8.4e-238 826.6 417 100.0
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 2.8e-156 555.8 393 69.2
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 4.4e-154 548.5 395 68.6
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 2.9e-153 545.8 396 68.9
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 1.1e-152 543.9 415 65.5
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 4.1e-152 542.0 410 66.6
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 5.4e-152 541.6 391 68.0
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 1.2e-151 540.4 404 66.6
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 2.0e-151 539.7 399 66.9
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 2.7e-151 539.3 395 67.3
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 3.5e-151 538.9 392 68.9
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 3.9e-150 535.4 394 67.3
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 3.9e-150 535.4 414 65.5
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 6.6e-150 534.6 416 64.2
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 1.5e-149 533.5 412 64.1
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 2.5e-149 532.7 397 65.5
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 3.3e-149 532.3 396 67.9
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 3.3e-149 532.3 390 66.4
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 5.6e-149 531.6 393 66.9
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 5.6e-149 531.6 400 66.8
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 1.6e-148 530.0 406 64.8
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 2.1e-148 529.6 392 66.3
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 4.7e-148 528.5 392 66.1
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 4.7e-148 528.5 401 65.6
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 6.2e-148 528.1 396 66.2
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 8.0e-148 527.7 399 65.2
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 3.1e-147 525.8 405 63.5
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 4.0e-147 525.4 393 66.2
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 8.9e-147 524.2 398 65.3
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 8.9e-147 524.2 423 63.6
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 2.0e-146 523.1 403 63.8
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 2.0e-146 523.1 395 66.1
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 4.4e-146 521.9 394 65.7
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 4.4e-146 521.9 407 63.4
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 5.8e-146 521.5 394 66.0
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 1.7e-145 520.0 404 63.9
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 2.2e-145 519.6 403 64.5
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 2.2e-145 519.6 403 64.5
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 2.2e-145 519.6 393 65.6
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 6.4e-145 518.1 422 64.0
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 1.1e-144 517.3 405 63.7
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 1.1e-144 517.3 416 63.5
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 1.4e-144 516.9 405 63.7
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 1.9e-144 516.5 406 64.0
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 2.4e-144 516.2 396 64.9
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 5.4e-144 515.0 414 61.6
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 2.0e-143 513.1 414 61.8
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 2.0e-143 513.1 407 64.1
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 2.0e-143 513.1 402 62.7
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 3.5e-143 512.3 395 63.3
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 4.6e-143 511.9 409 62.6
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 1.0e-142 510.8 391 63.4
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 1.3e-142 510.4 396 63.1
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 1.3e-142 510.4 423 61.0
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 2.3e-142 509.6 397 64.0
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 5.0e-142 508.4 404 63.4
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 6.6e-142 508.1 394 63.5
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 1.1e-141 507.3 415 61.0
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 1.5e-141 506.9 413 63.0
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 5.6e-141 505.0 397 62.2
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 7.3e-141 504.6 397 62.2
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 9.5e-141 504.2 418 61.7
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 1.2e-140 503.8 404 62.9
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 1.2e-140 503.8 397 62.0
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 1.2e-140 503.8 394 64.5
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 2.8e-140 502.7 406 62.6
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 4.7e-140 501.9 400 63.5
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.8e-139 500.0 400 63.2
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 2.0e-138 496.5 393 63.6
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 3.4e-138 495.7 394 63.5
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 5.8e-138 495.0 418 60.5
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 7.5e-138 494.6 289 83.0
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 6.4e-137 491.5 428 59.3
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 8.3e-137 491.1 429 59.2
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 3.2e-136 489.2 407 59.2
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 4.1e-136 488.8 454 57.3
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 4.1e-136 488.8 398 61.1
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 3.5e-135 485.7 403 60.5
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 6.6e-134 481.5 395 63.5
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 8.6e-134 481.1 394 59.9
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 4.4e-130 468.8 357 66.1
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 5.4e-128 461.8 413 57.4
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 3.5e-127 459.1 397 60.5
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 3.6e-124 449.1 371 62.0
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 4.9e-121 438.7 332 64.8
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 6.4e-121 438.3 394 58.4
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 1.6e-119 433.7 431 53.1
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 1.0e-118 431.0 387 55.3
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 3.0e-118 429.5 332 62.0
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 1.5e-117 427.2 396 56.6
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 4.3e-117 425.6 330 62.4
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 2.6e-114 416.4 410 53.7
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 4.9e-113 412.1 357 58.5
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 1.3e-110 404.1 367 57.5
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 3.0e-110 402.9 393 53.2
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 4.8e-108 395.6 322 61.2
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 1.2e-103 380.9 321 61.1
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 1.0e-102 377.9 314 60.2
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 1.0e-102 377.9 320 60.6
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 2.1e-100 370.2 285 63.9
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 9.0e-99 364.8 317 58.0
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 4.5e-98 362.5 291 60.5
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 4.5e-98 362.5 282 62.1
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 9.7e-93 344.7 313 57.8
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 1.8e-91 340.5 438 46.1
CARHR166990 Cardamine hirsuta HOM05D005510 ORTHO05D006750 2.9e-81 306.6 238 63.0
THA.LOC104803303 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 3.8e-81 306.2 254 59.4
TPR.G23234 Trifolium pratense HOM05D005510 ORTHO05D006750 1.8e-78 297.4 213 68.1
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 2.6e-74 283.5 249 60.2
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 3.4e-74 283.1 384 43.5
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 1.7e-73 280.8 237 59.9
THA.LOC104803301 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 8.5e-73 278.5 191 68.6
CAN.G248.49 Capsicum annuum HOM05D005510 ORTHO05D006750 1.2e-63 248.1 347 42.1
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 4.4e-53 213.0 423 37.1
MSTRG.19825 Avicennia marina HOM05D005510 ORTHO05D006750 1.7e-52 211.1 158 69.6
TPR.G942 Trifolium pratense HOM05D005510 ORTHO05D006750 1.8e-51 207.6 148 70.3
SEGI_04748 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 2.7e-50 203.8 158 67.7
Manes.07G109500 Manihot esculenta HOM05D005510 ORTHO05D006750 4.0e-46 189.9 158 63.3
Manes.05G099066 Manihot esculenta HOM05D005510 ORTHO05D006750 1.7e-44 184.5 158 62.0
Zm00001eb341880 Zea mays HOM05D005510 ORTHO05D006750 9.2e-43 178.7 114 77.2
PGSC0003DMG400012053 Solanum tuberosum HOM05D005510 ORTHO05D006750 2.8e-39 167.2 140 55.0
CBR_g4412 Chara braunii HOM05D005510 ORTHO05D006750 4.9e-36 156.4 450 30.9
AagrBONN_evm.TU.Sc2ySwM_344.567 Anthoceros agrestis HOM05D005510 ORTHO05D006750 1.1e-35 155.2 435 31.3
Pp3c25_9310 Physcomitrium patens HOM05D005510 ORTHO05D006750 1.4e-35 154.8 419 31.3
SMO356G0394 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 2.0e-34 151.0 419 30.5
Mapoly0085s0100 Marchantia polymorpha HOM05D005510 ORTHO05D006750 3.3e-32 143.7 416 30.5
SalBow7G3561 Salvia bowleyana HOM05D005510 ORTHO05D006750 3.3e-32 143.7 120 62.5
CAN.G524.4 Capsicum annuum HOM05D005510 ORTHO05D006750 1.7e-25 121.3 87 62.1
SEGI_32136 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 2.3e-25 120.9 80 68.8
MD14G1091800 Malus domestica HOM05D005510 ORTHO05D006750 4.4e-21 106.7 94 57.4
PRCOL_00000521 Prasinoderma coloniale HOM05D005510 ORTHO05D006750 2.9e-20 104.0 271 32.1
CAN.G636.4 Capsicum annuum HOM05D005510 ORTHO05D006750 1.1e-19 102.1 246 33.3
AUR62018455 Chenopodium quinoa HOM05D005510 ORTHO05D006750 7.3e-16 89.4 65 67.7
MD14G1091600 Malus domestica HOM05D005510 ORTHO05D006750 7.3e-16 89.4 65 70.8
CAN.G641.39 Capsicum annuum HOM05D005510 ORTHO05D006750 1.7e-12 78.2 63 65.1
CAN.G524.9 Capsicum annuum HOM05D005510 ORTHO05D020273 2.2e-12 77.8 53 64.2
CDE09G0372 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 6.0e-10 69.7 59 57.6
MD14G1091700 Malus domestica HOM05D005510 ORTHO05D006750 5.6e-08 63.2 38 81.6


User provided reference genes

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