Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0808900 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 2.6e-37 159.5 185 100.0
Os05g0390800 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 1.1e-24 117.5 190 58.4
Zm00001eb369260 Zea mays HOM05D002974 ORTHO05D002992 1.1e-16 90.9 185 44.9
Zm00001eb005210 Zea mays HOM05D002974 ORTHO05D002992 1.5e-13 80.5 152 37.5
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 5.9e-10 68.6 49 71.4
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 3.8e-09 65.9 43 76.7
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 5.0e-09 65.5 49 69.4
Os05g0491700 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 5.0e-09 65.5 39 79.5
Zm00001eb352450 Zea mays HOM05D002974 ORTHO05D002992 6.5e-09 65.1 38 78.9
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 8.6e-09 64.7 46 65.2
ClCG10G016220 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.1e-08 64.3 44 75.0
MELO3C009755.2 Cucumis melo HOM05D002974 ORTHO05D002992 1.1e-08 64.3 44 75.0
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.5e-08 63.9 45 73.3
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 2.5e-08 63.2 46 65.2
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 2.5e-08 63.2 44 68.2
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 3.2e-08 62.8 35 85.7
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 4.2e-08 62.4 41 78.0
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 4.2e-08 62.4 49 67.3
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 5.5e-08 62.0 42 76.2
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 5.5e-08 62.0 47 68.1
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 7.2e-08 61.6 35 82.9
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 7.2e-08 61.6 42 73.8
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 7.2e-08 61.6 47 66.0
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 7.2e-08 61.6 42 73.8
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 9.5e-08 61.2 43 69.8
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 9.5e-08 61.2 41 75.6
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 1.2e-07 60.8 43 72.1
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.2e-07 60.8 34 85.3
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 1.6e-07 60.5 42 71.4
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.6e-07 60.5 40 70.0
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 2.1e-07 60.1 46 67.4
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 2.1e-07 60.1 46 67.4
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 2.8e-07 59.7 33 87.9
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.8e-07 59.7 46 63.0
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 2.8e-07 59.7 41 73.2
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 3.6e-07 59.3 47 59.6
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 3.6e-07 59.3 54 61.1
unitig_26.g9507 Utricularia gibba HOM05D002974 ORTHO05D002992 3.6e-07 59.3 49 57.1
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 4.7e-07 58.9 39 71.8
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 4.7e-07 58.9 39 71.8
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 4.7e-07 58.9 39 71.8
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 4.7e-07 58.9 47 63.8
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 4.7e-07 58.9 41 75.6
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 6.1e-07 58.5 39 66.7
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 6.1e-07 58.5 43 67.4
Nn3g19575 Nelumbo nucifera HOM05D011447 ORTHO05D010069 6.1e-07 58.5 53 58.5
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 6.1e-07 58.5 42 64.3
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 6.1e-07 58.5 42 73.8
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 6.1e-07 58.5 41 70.7
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 6.1e-07 58.5 35 77.1
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 6.1e-07 58.5 35 77.1
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 8.0e-07 58.2 56 58.9
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 8.0e-07 58.2 41 68.3
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 8.0e-07 58.2 49 61.2
Medtr7g089860 Medicago truncatula HOM05D002974 ORTHO05D002992 8.0e-07 58.2 42 71.4
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 8.0e-07 58.2 39 69.2
HPP92_028460 Vanilla planifolia HOM05D002974 ORTHO05D002992 8.0e-07 58.2 35 74.3
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 1.0e-06 57.8 46 65.2
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.0e-06 57.8 39 66.7
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 1.0e-06 57.8 50 62.0
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.0e-06 57.8 50 62.0
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 1.0e-06 57.8 38 73.7
PSO339G5722 Papaver somniferum HOM05D002974 ORTHO05D002992 1.0e-06 57.8 39 71.8
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 1.0e-06 57.8 49 59.2
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.4e-06 57.4 46 58.7
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.4e-06 57.4 50 64.0
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 1.4e-06 57.4 39 66.7
SGA_v2.0_scaffold232G43495 Striga asiatica HOM05D002974 ORTHO05D002992 1.4e-06 57.4 37 70.3
MSTRG.5073 Avicennia marina HOM05D002974 ORTHO05D002992 1.8e-06 57.0 40 65.0
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 1.8e-06 57.0 38 71.1
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 1.8e-06 57.0 41 65.9
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 1.8e-06 57.0 48 58.3
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 1.8e-06 57.0 39 66.7
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 1.8e-06 57.0 57 52.6
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 1.8e-06 57.0 34 79.4
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 1.8e-06 57.0 48 58.3
MSTRG.28034 Avicennia marina HOM05D002974 ORTHO05D002992 2.3e-06 56.6 44 61.4
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 2.3e-06 56.6 43 62.8
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 2.3e-06 56.6 43 62.8
FAN02G0528 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.0e-06 56.2 50 60.0
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 3.0e-06 56.2 39 64.1
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 3.0e-06 56.2 41 63.4
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 3.0e-06 56.2 41 63.4
Solyc10g078440.2 Solanum lycopersicum HOM05D015198 ORTHO05D002992 3.0e-06 56.2 39 69.2
PGSC0003DMG400008372 Solanum tuberosum HOM05D015198 ORTHO05D002992 3.0e-06 56.2 39 69.2
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 4.0e-06 55.8 34 79.4
BcaC02g09866 Brassica carinata HOM05D002974 ORTHO05D002992 4.0e-06 55.8 55 58.2
C04p35760 Brassica napus HOM05D002974 ORTHO05D002992 4.0e-06 55.8 55 58.2
BolC4t25224H Brassica oleracea HOM05D002974 ORTHO05D002992 4.0e-06 55.8 55 58.2
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 4.0e-06 55.8 43 60.5
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 4.0e-06 55.8 50 52.0
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.0e-06 55.8 50 52.0
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 4.0e-06 55.8 39 66.7
SalBow5G5227 Salvia bowleyana HOM05D002974 ORTHO05D002992 4.0e-06 55.8 41 63.4
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 4.0e-06 55.8 46 63.0
BcaB02g08350 Brassica carinata HOM05D002974 ORTHO05D002992 5.2e-06 55.5 54 59.3
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 5.2e-06 55.5 54 59.3
BraA04t16084Z Brassica rapa HOM05D002974 ORTHO05D002992 5.2e-06 55.5 54 59.3
BraA04t16085Z Brassica rapa HOM05D002974 ORTHO05D002992 5.2e-06 55.5 54 59.3
CDE08G1203 Ceratophyllum demersum HOM05D002974 ORTHO05D002992 5.2e-06 55.5 39 64.1
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.2e-06 55.5 45 57.8
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.2e-06 55.5 45 57.8
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 5.2e-06 55.5 42 66.7
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 5.2e-06 55.5 43 58.1
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 5.2e-06 55.5 41 65.9
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 6.8e-06 55.1 39 66.7
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 6.8e-06 55.1 45 57.8
Peaxi162Scf00082g00006 Petunia axillaris HOM05D002974 ORTHO05D002992 6.8e-06 55.1 35 77.1
SHI49841 Sapria himalayana HOM05D048774 ORTHO05D002992 6.8e-06 55.1 36 72.2
SHI50452 Sapria himalayana HOM05D048774 ORTHO05D002992 6.8e-06 55.1 36 72.2
Sc19g0008170 Simmondsia chinensis HOM05D015198 ORTHO05D002992 6.8e-06 55.1 40 67.5
MSTRG.10792 Avicennia marina HOM05D002974 ORTHO05D002992 8.8e-06 54.7 40 62.5
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 8.8e-06 54.7 40 72.5
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 8.8e-06 54.7 40 72.5
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 8.8e-06 54.7 42 71.4
DCAR_025326 Daucus carota HOM05D002974 ORTHO05D002992 8.8e-06 54.7 39 64.1
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 8.8e-06 54.7 39 66.7
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 8.8e-06 54.7 50 60.0
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 8.8e-06 54.7 46 60.9
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 8.8e-06 54.7 38 68.4
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 8.8e-06 54.7 43 65.1


User provided reference genes

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