Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0797800 Oryza sativa ssp. japonica HOM05D001337 ORTHO05D001281 9.9e-38 160.2 122 100.0
Os02g0208700 Oryza sativa ssp. japonica HOM05D001337 ORTHO05D001281 1.5e-14 83.2 47 83.0
Os06g0594400 Oryza sativa ssp. japonica HOM05D001337 ORTHO05D001281 6.0e-11 71.2 57 64.9
Hma1.2p1_0682F.1_g202680 Hydrangea macrophylla HOM05D001337 ORTHO05D001281 5.1e-10 68.2 47 61.7
Zm00001eb277050 Zea mays HOM05D001337 ORTHO05D001281 5.1e-10 68.2 47 70.2
MBI04_g26640_MAGBIO Magnolia biondii HOM05D001337 ORTHO05D001281 3.3e-09 65.5 47 61.7
Dinv38058 Davidia involucrata HOM05D001337 ORTHO05D001281 4.3e-09 65.1 47 57.4
Medtr4g011900 Medicago truncatula HOM05D001337 ORTHO05D001281 4.3e-09 65.1 47 57.4
Phvul.010G151500 Phaseolus vulgaris HOM05D001337 ORTHO05D001281 4.3e-09 65.1 47 61.7
Cc04_g03570 Coffea canephora HOM05D001337 ORTHO05D001281 5.6e-09 64.7 47 59.6
Glyma.08G207700 Glycine max HOM05D001337 ORTHO05D001281 9.6e-09 63.9 47 59.6
PSO782G0375 Papaver somniferum HOM05D001337 ORTHO05D001281 9.6e-09 63.9 47 57.4
PSO782G0637 Papaver somniferum HOM05D001337 ORTHO05D001281 9.6e-09 63.9 47 57.4
PSO782G2147 Papaver somniferum HOM05D001337 ORTHO05D001281 9.6e-09 63.9 47 57.4
CDE06G1862 Ceratophyllum demersum HOM05D001337 ORTHO05D001281 1.3e-08 63.5 47 57.4
Nitab4.5_0006801g0010 Nicotiana tabacum HOM05D001337 ORTHO05D001281 1.3e-08 63.5 47 57.4
Peaxi162Scf00015g00033 Petunia axillaris HOM05D001337 ORTHO05D001281 1.3e-08 63.5 47 57.4
Actinidia01795 Actinidia chinensis HOM05D001337 ORTHO05D001281 1.6e-08 63.2 47 57.4
CAN.G438.54 Capsicum annuum HOM05D001337 ORTHO05D001281 1.6e-08 63.2 47 57.4
COL.COLO4_30334 Corchorus olitorius HOM05D001337 ORTHO05D001281 1.6e-08 63.2 47 57.4
Migut.I00848 Erythranthe guttata HOM05D001337 ORTHO05D001281 1.6e-08 63.2 47 53.2
Lj3g0013045 Lotus japonicus HOM05D001337 ORTHO05D001281 1.6e-08 63.2 48 62.5
Lj5C62T9 Lonicera japonica HOM05D001337 ORTHO05D001281 2.1e-08 62.8 47 59.6
Thecc.06G083400 Theobroma cacao HOM05D001337 ORTHO05D001281 2.1e-08 62.8 47 57.4
Duzib235G0360 Durio zibethinus HOM05D001337 ORTHO05D001281 2.8e-08 62.4 47 57.4
Eucgr.J03014 Eucalyptus grandis HOM05D001337 ORTHO05D001281 2.8e-08 62.4 47 57.4
Gohir.D10G072400 Gossypium hirsutum HOM05D001337 ORTHO05D001281 2.8e-08 62.4 47 57.4
Gorai.011G078000 Gossypium raimondii HOM05D001337 ORTHO05D001281 2.8e-08 62.4 47 57.4
THA.LOC104808205 Tarenaya hassleriana HOM05D001337 ORTHO05D001281 2.8e-08 62.4 47 57.4
Glyma.07G034400 Glycine max HOM05D001337 ORTHO05D001281 3.7e-08 62.0 47 57.4
Gohir.A10G079100 Gossypium hirsutum HOM05D001337 ORTHO05D001281 3.7e-08 62.0 47 57.4
PSO063G1872 Papaver somniferum HOM05D001337 ORTHO05D001281 3.7e-08 62.0 47 55.3
PSO063G3894 Papaver somniferum HOM05D001337 ORTHO05D001281 3.7e-08 62.0 46 56.5
PSO063G6742 Papaver somniferum HOM05D001337 ORTHO05D001281 3.7e-08 62.0 47 55.3
PGR102G0051 Punica granatum HOM05D001337 ORTHO05D001281 3.7e-08 62.0 46 54.3
PGR102G2246 Punica granatum HOM05D001337 ORTHO05D001281 3.7e-08 62.0 46 54.3
TAR383G1043 Trochodendron aralioides HOM05D001337 ORTHO05D001281 3.7e-08 62.0 47 55.3
CDE07G1861 Ceratophyllum demersum HOM05D001337 ORTHO05D001281 4.8e-08 61.6 47 55.3
COL.COLO4_30335 Corchorus olitorius HOM05D001337 ORTHO05D001281 4.8e-08 61.6 47 55.3
Duzib235G0651 Durio zibethinus HOM05D001337 ORTHO05D001281 4.8e-08 61.6 47 57.4
Lj3g0007919 Lotus japonicus HOM05D001337 ORTHO05D001281 4.8e-08 61.6 41 63.4
Nn2g11833 Nelumbo nucifera HOM05D001337 ORTHO05D001281 4.8e-08 61.6 47 53.2
vmacro18931 Vaccinium macrocarpon HOM05D001337 ORTHO05D001281 4.8e-08 61.6 47 57.4
VMungo0331G0514 Vigna mungo HOM05D001337 ORTHO05D001281 4.8e-08 61.6 47 57.4
Eucgr.J03013 Eucalyptus grandis HOM05D001337 ORTHO05D001281 6.2e-08 61.2 46 56.5
Glyma.15G013300 Glycine max HOM05D001337 ORTHO05D001281 6.2e-08 61.2 48 58.3
Nitab4.5_0003885g0100 Nicotiana tabacum HOM05D001337 ORTHO05D001281 6.2e-08 61.2 47 55.3
Phvul.005G172400 Phaseolus vulgaris HOM05D001337 ORTHO05D001281 6.2e-08 61.2 47 55.3
DCAR_026307 Daucus carota HOM05D001337 ORTHO05D001281 8.1e-08 60.8 47 57.4
Eucgr.J03012 Eucalyptus grandis HOM05D001337 ORTHO05D001281 8.1e-08 60.8 47 57.4
Glyma.13G360600 Glycine max HOM05D001337 ORTHO05D001281 8.1e-08 60.8 47 55.3
Gohir.A10G079200 Gossypium hirsutum HOM05D001337 ORTHO05D001281 8.1e-08 60.8 47 57.4
Gohir.D10G072300 Gossypium hirsutum HOM05D001337 ORTHO05D001281 8.1e-08 60.8 47 57.4
Gorai.011G077800 Gossypium raimondii HOM05D001337 ORTHO05D001281 8.1e-08 60.8 47 57.4
CSS0046299 Camellia sinensis var. sinensis HOM05D001337 ORTHO05D001281 1.1e-07 60.5 47 53.2
Solyc03g120320.1 Solanum lycopersicum HOM05D001337 ORTHO05D001281 1.1e-07 60.5 47 55.3
Eucgr.J03015 Eucalyptus grandis HOM05D001337 ORTHO05D001281 1.4e-07 60.1 47 53.2
SalBow2G2593 Salvia bowleyana HOM05D001337 ORTHO05D001281 1.4e-07 60.1 47 57.4
PGSC0003DMG400002562 Solanum tuberosum HOM05D001337 ORTHO05D001281 1.4e-07 60.1 47 55.3
Zm00001eb168220 Zea mays HOM05D001337 ORTHO05D001281 1.4e-07 60.1 58 56.9
Lalb_Chr25g0279621 Lupinus albus HOM05D001337 ORTHO05D001281 1.8e-07 59.7 47 55.3
Nn8g39272 Nelumbo nucifera HOM05D001337 ORTHO05D001281 1.8e-07 59.7 47 51.1
Rhsim12G0196700 Rhododendron simsii HOM05D001337 ORTHO05D001281 1.8e-07 59.7 47 53.2
PSO782G4287 Papaver somniferum HOM05D001337 ORTHO05D001281 3.1e-07 58.9 47 53.2
Psat1g004480 Pisum sativum HOM05D001337 ORTHO05D001281 3.1e-07 58.9 43 55.8
Psat7g253160 Pisum sativum HOM05D001337 ORTHO05D001281 3.1e-07 58.9 47 53.2
Rhsim12G0196800 Rhododendron simsii HOM05D001337 ORTHO05D001281 3.1e-07 58.9 47 51.1
Sopen03g039210 Solanum pennellii HOM05D001337 ORTHO05D001281 3.1e-07 58.9 47 53.2
VMungo1080G0493 Vigna mungo HOM05D001337 ORTHO05D001281 3.1e-07 58.9 47 55.3
arahy.Tifrunner.gnm1.ann1.4F68EX Arachis hypogaea HOM05D001337 ORTHO05D001281 4.0e-07 58.5 47 55.3
arahy.Tifrunner.gnm1.ann1.5H6YYL Arachis hypogaea HOM05D001337 ORTHO05D001281 4.0e-07 58.5 47 55.3
Ca_20404_v3 Cicer arietinum L. HOM05D001337 ORTHO05D001281 4.0e-07 58.5 47 51.1
Manes.11G052140 Manihot esculenta HOM05D001337 ORTHO05D001281 4.0e-07 58.5 47 51.1
Prupe.3G073600 Prunus persica HOM05D001337 ORTHO05D001281 4.0e-07 58.5 47 51.1
THA.LOC104812470 Tarenaya hassleriana HOM05D001337 ORTHO05D001281 4.0e-07 58.5 47 55.3
MD17G1197600 Malus domestica HOM05D001337 ORTHO05D001281 5.3e-07 58.2 47 48.9
Manes.11G052110 Manihot esculenta HOM05D001337 ORTHO05D001281 5.3e-07 58.2 47 51.1
Duzib192G0513 Durio zibethinus HOM05D001337 ORTHO05D001281 6.9e-07 57.8 47 53.2
CSS0041305 Camellia sinensis var. sinensis HOM05D001337 ORTHO05D001281 9.0e-07 57.4 47 51.1
Eucgr.B03615 Eucalyptus grandis HOM05D001337 ORTHO05D001281 9.0e-07 57.4 46 58.7
arahy.Tifrunner.gnm1.ann1.ELW4ST Arachis hypogaea HOM05D001337 ORTHO05D001281 1.2e-06 57.0 47 48.9
CDE02G2820 Ceratophyllum demersum HOM05D001337 ORTHO05D001281 1.2e-06 57.0 47 51.1
Manes.09G040100 Manihot esculenta HOM05D001337 ORTHO05D001281 1.2e-06 57.0 46 56.5
Oeu033498.3 Olea europaea HOM05D001337 ORTHO05D001281 1.2e-06 57.0 47 55.3
Os11g0246200 Oryza sativa ssp. japonica HOM05D001337 ORTHO05D001281 1.2e-06 57.0 37 67.6
Sp1g13980 Schrenkiella parvula HOM05D001337 ORTHO05D001281 1.2e-06 57.0 47 53.2
SEGI_33638 Sequoiadendron giganteum HOM05D001337 ORTHO05D001281 1.2e-06 57.0 46 54.3
Thecc.06G083500 Theobroma cacao HOM05D001337 ORTHO05D001281 1.2e-06 57.0 47 53.2
GSVIVG01017545001 Vitis vinifera HOM05D001337 ORTHO05D001281 1.2e-06 57.0 47 48.9
MSTRG.11088 Avicennia marina HOM05D001337 ORTHO05D001281 1.5e-06 56.6 47 53.2
EL10Ac9g21985 Beta vulgaris HOM05D001337 ORTHO05D001281 1.5e-06 56.6 46 50.0
Ca_01107_v3 Cicer arietinum L. HOM05D001337 ORTHO05D001281 1.5e-06 56.6 41 56.1
ECA232G1581 Erigeron canadensis HOM05D001337 ORTHO05D001281 1.5e-06 56.6 47 53.2
Lsat_1_v5_gn_4_103441 Lactuca sativa HOM05D001337 ORTHO05D001281 1.5e-06 56.6 47 53.2
Manes.04G121600 Manihot esculenta HOM05D001337 ORTHO05D001281 1.5e-06 56.6 47 48.9
PSO782G4344 Papaver somniferum HOM05D001337 ORTHO05D001281 1.5e-06 56.6 46 52.2
HPP92_016125 Vanilla planifolia HOM05D001337 ORTHO05D001281 1.5e-06 56.6 43 55.8
CAN.G438.53 Capsicum annuum HOM05D001337 ORTHO05D001281 2.0e-06 56.2 47 48.9
TWI75G1252 Tripterygium wilfordii HOM05D001337 ORTHO05D001281 2.0e-06 56.2 47 51.1
Actinidia01794 Actinidia chinensis HOM05D001337 ORTHO05D001281 2.6e-06 55.8 46 52.2
MSTRG.22701 Avicennia marina HOM05D001337 ORTHO05D001281 2.6e-06 55.8 47 51.1
CiPaw.01G240600 Carya illinoinensis HOM05D001337 ORTHO05D001281 2.6e-06 55.8 47 48.9
Ciclev10025956m.g Citrus clementina HOM05D001337 ORTHO05D001281 2.6e-06 55.8 47 48.9
CiPaw.01G240500 Carya illinoinensis HOM05D001337 ORTHO05D001281 3.4e-06 55.5 47 48.9
CDE09G1074 Ceratophyllum demersum HOM05D001337 ORTHO05D001281 3.4e-06 55.5 46 56.5
HanXRQChr09g0275381 Helianthus annuus HOM05D001337 ORTHO05D001281 3.4e-06 55.5 47 51.1
Lj2P361T21 Lonicera japonica HOM05D001337 ORTHO05D001281 3.4e-06 55.5 46 54.3
Lalb_Chr04g0262601 Lupinus albus HOM05D001337 ORTHO05D001281 3.4e-06 55.5 47 48.9
Medtr2g102370 Medicago truncatula HOM05D001337 ORTHO05D001281 3.4e-06 55.5 52 51.9
Solyc06g066770.1 Solanum lycopersicum HOM05D001337 ORTHO05D001281 3.4e-06 55.5 47 53.2
Actinidia14366 Actinidia chinensis HOM05D001337 ORTHO05D001281 4.5e-06 55.1 47 51.1
Aqoxy7G01833 Aquilegia oxysepala HOM05D001337 ORTHO05D001281 4.5e-06 55.1 46 52.2
CAN.G395.18 Capsicum annuum HOM05D001337 ORTHO05D001281 4.5e-06 55.1 47 51.1
Thhalv10008027m.g Eutrema salsugineum HOM05D001337 ORTHO05D001281 4.5e-06 55.1 47 51.1
Rhsim08G0218800 Rhododendron simsii HOM05D001337 ORTHO05D001281 4.5e-06 55.1 47 51.1
Rhsim12G0196300 Rhododendron simsii HOM05D001337 ORTHO05D001281 4.5e-06 55.1 47 48.9
Rhsim12G0196900 Rhododendron simsii HOM05D001337 ORTHO05D001281 4.5e-06 55.1 47 46.8
CANSAT56G0115 Cannabis sativa HOM05D001337 ORTHO05D001281 5.8e-06 54.7 47 48.9
Rhsim08G0218900 Rhododendron simsii HOM05D001337 ORTHO05D001281 5.8e-06 54.7 47 51.1
HPP92_003642 Vanilla planifolia HOM05D001337 ORTHO05D001281 5.8e-06 54.7 46 50.0
AL2G41060 Arabidopsis lyrata HOM05D001337 ORTHO05D001281 7.6e-06 54.3 47 51.1
BcaC05g25511 Brassica carinata HOM05D001337 ORTHO05D001281 7.6e-06 54.3 47 53.2
CSS0046472 Camellia sinensis var. sinensis HOM05D001337 ORTHO05D001281 7.6e-06 54.3 47 46.8
Carub.0001s1545 Capsella rubella HOM05D001337 ORTHO05D001281 7.6e-06 54.3 47 48.9
COL.COLO4_29432 Corchorus olitorius HOM05D001337 ORTHO05D001281 7.6e-06 54.3 46 52.2
FAN02G1500 Fragaria x ananassa HOM05D001337 ORTHO05D001281 7.6e-06 54.3 47 51.1
MBI07_g22517_MAGBIO Magnolia biondii HOM05D001337 ORTHO05D001281 7.6e-06 54.3 46 54.3
PGSC0003DMG400002561 Solanum tuberosum HOM05D001337 ORTHO05D001281 7.6e-06 54.3 47 48.9
PGSC0003DMG400016540 Solanum tuberosum HOM05D001337 ORTHO05D001281 7.6e-06 54.3 47 46.8
PGSC0003DMG400016541 Solanum tuberosum HOM05D001337 ORTHO05D001281 7.6e-06 54.3 47 46.8
PGSC0003DMG400016542 Solanum tuberosum HOM05D001337 ORTHO05D001281 7.6e-06 54.3 47 46.8
vmacro16943 Vaccinium macrocarpon HOM05D001337 ORTHO05D001281 7.6e-06 54.3 47 48.9
GSVIVG01017147001 Vitis vinifera HOM05D001337 ORTHO05D001281 7.6e-06 54.3 53 47.2
Atru.chr8.1218 Acer truncatum HOM05D001337 ORTHO05D001281 1.0e-05 53.9 46 54.3
BcaB03g14530 Brassica carinata HOM05D001337 ORTHO05D001281 1.0e-05 53.9 47 51.1
BcaC05g25642 Brassica carinata HOM05D001337 ORTHO05D001281 1.0e-05 53.9 47 48.9
BcaC08g47589 Brassica carinata HOM05D001337 ORTHO05D001281 1.0e-05 53.9 47 48.9
C05p13820 Brassica napus HOM05D001337 ORTHO05D001281 1.0e-05 53.9 47 48.9
C06p54090 Brassica napus HOM05D001337 ORTHO05D001281 1.0e-05 53.9 47 48.9
BolC5t30119H Brassica oleracea HOM05D001337 ORTHO05D001281 1.0e-05 53.9 47 48.9
BraA07t32029Z Brassica rapa HOM05D001337 ORTHO05D001281 1.0e-05 53.9 47 48.9
Carub.0002s2714 Capsella rubella HOM05D001337 ORTHO05D001281 1.0e-05 53.9 47 53.2
Ca_17952_v3 Cicer arietinum L. HOM05D001337 ORTHO05D001281 1.0e-05 53.9 46 54.3
Haze_16455 Corylus avellana HOM05D001337 ORTHO05D001281 1.0e-05 53.9 47 48.9
Sabra16G0064300 Salix brachista HOM05D001337 ORTHO05D001281 1.0e-05 53.9 46 52.2
GSVIVG01017151001 Vitis vinifera HOM05D001337 ORTHO05D001281 1.0e-05 53.9 36 61.1


User provided reference genes

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