Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0793600 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D026306 2.9e-57 225.3 142 100.0
Zm00001eb369650 Zea mays HOM05D001404 ORTHO05D002309 3.6e-23 112.1 114 53.5
PGR083G1708 Punica granatum HOM05D001404 ORTHO05D002309 5.0e-17 91.7 81 51.9
QL08p010731 Quercus lobata HOM05D001404 ORTHO05D002309 5.5e-16 88.2 88 51.1
QL08p011185 Quercus lobata HOM05D001404 ORTHO05D002309 5.5e-16 88.2 88 51.1
Hund23259 Selenicereus undatus HOM05D001404 ORTHO05D002309 5.5e-16 88.2 81 49.4
arahy.Tifrunner.gnm1.ann1.BY7ESR Arachis hypogaea HOM05D001404 ORTHO05D002309 7.2e-16 87.8 80 51.2
arahy.Tifrunner.gnm1.ann1.HWX1MU Arachis hypogaea HOM05D001404 ORTHO05D002309 7.2e-16 87.8 80 51.2
AUR62015744 Chenopodium quinoa HOM05D001404 ORTHO05D002309 7.2e-16 87.8 80 52.5
Nn1g03568 Nelumbo nucifera HOM05D001404 ORTHO05D002309 7.2e-16 87.8 83 49.4
AT4G27020 Arabidopsis thaliana HOM05D001404 ORTHO05D002309 9.5e-16 87.4 81 53.1
BcaNung03577 Brassica carinata HOM05D001404 ORTHO05D002309 9.5e-16 87.4 81 53.1
CANSAT01G3099 Cannabis sativa HOM05D001404 ORTHO05D002309 9.5e-16 87.4 80 51.2
Eucgr.F00885 Eucalyptus grandis HOM05D001404 ORTHO05D002309 1.2e-15 87.0 83 51.8
Glyma.14G025100 Glycine max HOM05D001404 ORTHO05D002309 1.2e-15 87.0 80 52.5
Prupe.4G210800 Prunus persica HOM05D001404 ORTHO05D002309 1.2e-15 87.0 83 50.6
AUR62020468 Chenopodium quinoa HOM05D001404 ORTHO05D002309 1.6e-15 86.7 80 52.5
VMungo0647G2548 Vigna mungo HOM05D001404 ORTHO05D002309 1.6e-15 86.7 80 55.0
AL7G25810 Arabidopsis lyrata HOM05D001404 ORTHO05D002309 2.1e-15 86.3 81 51.9
A01p18180 Brassica napus HOM05D001404 ORTHO05D002309 2.1e-15 86.3 81 51.9
C01p23140 Brassica napus HOM05D001404 ORTHO05D002309 2.1e-15 86.3 81 51.9
BraA01t01773Z Brassica rapa HOM05D001404 ORTHO05D002309 2.1e-15 86.3 81 51.9
ClCG05G014400 Citrullus lanatus HOM05D001404 ORTHO05D002309 2.1e-15 86.3 92 45.7
Sc03g0008660 Simmondsia chinensis HOM05D001404 ORTHO05D002309 2.1e-15 86.3 80 52.5
Aa31LG3G10800 Aethionema arabicum HOM05D001404 ORTHO05D002309 2.8e-15 85.9 90 46.7
Carub.0007s1382 Capsella rubella HOM05D001404 ORTHO05D002309 2.8e-15 85.9 81 51.9
EL10Ac4g07840 Beta vulgaris HOM05D001404 ORTHO05D002309 3.6e-15 85.5 80 50.0
Cc05_g13600 Coffea canephora HOM05D001404 ORTHO05D002309 3.6e-15 85.5 81 50.6
COL.COLO4_09645 Corchorus olitorius HOM05D001404 ORTHO05D002309 3.6e-15 85.5 83 49.4
Migut.M01778 Erythranthe guttata HOM05D001404 ORTHO05D002309 3.6e-15 85.5 80 50.0
Lj8A168T99 Lonicera japonica HOM05D001404 ORTHO05D002309 3.6e-15 85.5 80 52.5
Nn1g07116 Nelumbo nucifera HOM05D001404 ORTHO05D002309 3.6e-15 85.5 81 49.4
Nitab4.5_0001604g0110 Nicotiana tabacum HOM05D001404 ORTHO05D002309 3.6e-15 85.5 80 52.5
THA.LOC104817662 Tarenaya hassleriana HOM05D001404 ORTHO05D002309 3.6e-15 85.5 81 50.6
Atru.chr2.3377 Acer truncatum HOM05D001404 ORTHO05D002309 4.7e-15 85.1 81 50.6
Cfa020371 Carpinus fangiana HOM05D001404 ORTHO05D002309 4.7e-15 85.1 87 50.6
Thhalv10024847m.g Eutrema salsugineum HOM05D001404 ORTHO05D002309 4.7e-15 85.1 81 51.9
Potri.001G424500 Populus trichocarpa HOM05D001404 ORTHO05D002309 4.7e-15 85.1 83 48.2
Thecc.07G042700 Theobroma cacao HOM05D001404 ORTHO05D002309 4.7e-15 85.1 83 49.4
Thhalv10013232m.g Eutrema salsugineum HOM05D001404 ORTHO05D002309 6.1e-15 84.7 81 49.4
Ah.04g165800 Amaranthus hybridus HOM05D001404 ORTHO05D002309 8.0e-15 84.3 80 47.5
PGR031G3696 Punica granatum HOM05D001404 ORTHO05D002309 8.0e-15 84.3 83 48.2
Sed0007740 Sechium edule HOM05D001404 ORTHO05D002309 8.0e-15 84.3 81 48.1
CiPaw.11G187900 Carya illinoinensis HOM05D001404 ORTHO05D002309 1.0e-14 84.0 83 50.6
FAN21G3023 Fragaria x ananassa HOM05D001404 ORTHO05D002309 1.0e-14 84.0 81 49.4
Lsat_1_v5_gn_7_108781 Lactuca sativa HOM05D001404 ORTHO05D002309 1.0e-14 84.0 80 51.2
Nitab4.5_0001913g0040 Nicotiana tabacum HOM05D001404 ORTHO05D002309 1.0e-14 84.0 95 45.3
Potri.011G137700 Populus trichocarpa HOM05D001404 ORTHO05D002309 1.0e-14 84.0 81 48.1
Actinidia09907 Actinidia chinensis HOM05D001404 ORTHO05D002309 1.4e-14 83.6 81 49.4
CAN.G337.116 Capsicum annuum HOM05D001404 ORTHO05D002309 1.4e-14 83.6 80 50.0
CARHR234680 Cardamine hirsuta HOM05D001404 ORTHO05D002309 1.4e-14 83.6 81 50.6
CiPaw.12G128700 Carya illinoinensis HOM05D001404 ORTHO05D002309 1.4e-14 83.6 88 48.9
Dinv40741 Davidia involucrata HOM05D001404 ORTHO05D002309 1.4e-14 83.6 80 51.2
Lalb_Chr10g0106931 Lupinus albus HOM05D001404 ORTHO05D002309 1.4e-14 83.6 80 46.2
Prupe.4G210700 Prunus persica HOM05D001404 ORTHO05D002309 1.8e-14 83.2 81 49.4
Sp7g24980 Schrenkiella parvula HOM05D001404 ORTHO05D002309 1.8e-14 83.2 81 49.4
Hund02068 Selenicereus undatus HOM05D001404 ORTHO05D002309 1.8e-14 83.2 87 47.1
TPR.G1200 Trifolium pratense HOM05D001404 ORTHO05D002309 1.8e-14 83.2 80 48.8
BolC1t02248H Brassica oleracea HOM05D001404 ORTHO05D002309 2.3e-14 82.8 81 49.4
TWI39G0655 Tripterygium wilfordii HOM05D001404 ORTHO05D002309 2.3e-14 82.8 81 48.1
Cpa.g.sc97.26 Carica papaya HOM05D001404 ORTHO05D002309 3.0e-14 82.4 81 49.4
MELO3C018115.2 Cucumis melo HOM05D001404 ORTHO05D002309 3.0e-14 82.4 90 45.6
CsaV3_3G022940 Cucumis sativus L. HOM05D001404 ORTHO05D002309 3.0e-14 82.4 81 44.4
CsaV3_3G022950 Cucumis sativus L. HOM05D001404 ORTHO05D002309 3.0e-14 82.4 80 48.8
MD11G1221100 Malus domestica HOM05D001404 ORTHO05D002309 3.0e-14 82.4 81 46.9
MELO3C018112.2 Cucumis melo HOM05D001404 ORTHO05D002309 4.0e-14 82.0 81 44.4
FvH4_3g22420 Fragaria vesca HOM05D001404 ORTHO05D002309 4.0e-14 82.0 81 46.9
FAN11G2006 Fragaria x ananassa HOM05D001404 ORTHO05D002309 4.0e-14 82.0 81 46.9
MD03G1205200 Malus domestica HOM05D001404 ORTHO05D002309 4.0e-14 82.0 81 48.1
Manes.03G124700 Manihot esculenta HOM05D001404 ORTHO05D002309 4.0e-14 82.0 81 46.9
RcHm_v2.0_Chr5g0039091 Rosa chinensis HOM05D001404 ORTHO05D002309 4.0e-14 82.0 81 46.9
CSS0029688 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 5.2e-14 81.6 79 49.4
Cpa.g.sc97.22 Carica papaya HOM05D001404 ORTHO05D002309 5.2e-14 81.6 81 49.4
HanXRQChr08g0233971 Helianthus annuus HOM05D001404 ORTHO05D002309 5.2e-14 81.6 80 50.0
Sp6g16840 Schrenkiella parvula HOM05D001404 ORTHO05D002309 5.2e-14 81.6 81 48.1
TAR627G0153 Trochodendron aralioides HOM05D001404 ORTHO05D002309 5.2e-14 81.6 81 46.9
MSTRG.15156 Avicennia marina HOM05D001404 ORTHO05D002309 6.8e-14 81.3 80 48.8
CDE11G0222 Ceratophyllum demersum HOM05D001404 ORTHO05D002309 6.8e-14 81.3 81 46.9
ECA236G2430 Erigeron canadensis HOM05D001404 ORTHO05D002309 6.8e-14 81.3 77 51.9
Gohir.A04G018600 Gossypium hirsutum HOM05D001404 ORTHO05D002309 6.8e-14 81.3 90 44.4
Gohir.D05G367400 Gossypium hirsutum HOM05D001404 ORTHO05D002309 6.8e-14 81.3 90 44.4
Gorai.009G435000 Gossypium raimondii HOM05D001404 ORTHO05D002309 6.8e-14 81.3 90 44.4
Hma1.2p1_1271F.1_g271710 Hydrangea macrophylla HOM05D001404 ORTHO05D002309 6.8e-14 81.3 80 47.5
Lsat_1_v5_gn_5_6101 Lactuca sativa HOM05D001404 ORTHO05D002309 6.8e-14 81.3 80 48.8
LjContig00272g0006163 Lotus japonicus HOM05D001404 ORTHO05D002309 6.8e-14 81.3 80 48.8
Peaxi162Scf00964g00150 Petunia axillaris HOM05D001404 ORTHO05D002309 6.8e-14 81.3 82 50.0
Sabra16G0288700 Salix brachista HOM05D001404 ORTHO05D002309 6.8e-14 81.3 81 46.9
Eucgr.F00893 Eucalyptus grandis HOM05D001404 ORTHO05D002309 8.9e-14 80.9 83 49.4
HanXRQChr11g0336201 Helianthus annuus HOM05D001404 ORTHO05D002309 8.9e-14 80.9 80 47.5
Manes.15G073100 Manihot esculenta HOM05D001404 ORTHO05D002309 8.9e-14 80.9 81 46.9
Medtr5g092140 Medicago truncatula HOM05D001404 ORTHO05D002309 8.9e-14 80.9 80 47.5
PGSC0003DMG401022324 Solanum tuberosum HOM05D001404 ORTHO05D002309 8.9e-14 80.9 80 51.2
Ah.06g186210 Amaranthus hybridus HOM05D001404 ORTHO05D002309 1.2e-13 80.5 80 48.8
BcaB05g22166 Brassica carinata HOM05D001404 ORTHO05D002309 1.2e-13 80.5 81 48.1
PSO541G1641 Papaver somniferum HOM05D001404 ORTHO05D002309 1.2e-13 80.5 81 45.7
Sabra11G0123600 Salix brachista HOM05D001404 ORTHO05D002309 1.2e-13 80.5 81 45.7
Sed0003407 Sechium edule HOM05D001404 ORTHO05D002309 1.2e-13 80.5 81 44.4
Actinidia05105 Actinidia chinensis HOM05D001404 ORTHO05D026306 1.5e-13 80.1 81 48.1
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 1.5e-13 80.1 81 46.9
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 1.5e-13 80.1 81 46.9
Phvul.008G266000 Phaseolus vulgaris HOM05D001404 ORTHO05D002309 1.5e-13 80.1 80 52.5
Solyc07g064440.3 Solanum lycopersicum HOM05D001404 ORTHO05D002309 1.5e-13 80.1 80 51.2
Sopen07g032640 Solanum pennellii HOM05D001404 ORTHO05D002309 1.5e-13 80.1 80 51.2
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 2.0e-13 79.7 81 46.9
Migut.H01833 Erythranthe guttata HOM05D001404 ORTHO05D002309 2.0e-13 79.7 80 46.2
ATR0752G085 Amborella trichopoda HOM05D001404 ORTHO05D002309 2.6e-13 79.3 82 47.6
AT5G54870 Arabidopsis thaliana HOM05D001404 ORTHO05D002309 2.6e-13 79.3 81 45.7
CSS0034923 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 2.6e-13 79.3 80 47.5
CSS0041958 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 2.6e-13 79.3 80 48.8
Aa31LG5G10390 Aethionema arabicum HOM05D001404 ORTHO05D002309 3.4e-13 79.0 89 42.7
BcaC03g14278 Brassica carinata HOM05D001404 ORTHO05D002309 3.4e-13 79.0 81 46.9
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 3.4e-13 79.0 81 46.9
Nitab4.5_0001604g0120 Nicotiana tabacum HOM05D001404 ORTHO05D002309 3.4e-13 79.0 95 43.2
Oeu062593.1 Olea europaea HOM05D001404 ORTHO05D002309 3.4e-13 79.0 80 46.2
PSO675G6074 Papaver somniferum HOM05D001404 ORTHO05D002309 3.4e-13 79.0 81 44.4
Psat2g013760 Pisum sativum HOM05D001404 ORTHO05D002309 3.4e-13 79.0 80 45.0
Solyc07g064420.3 Solanum lycopersicum HOM05D001404 ORTHO05D002309 3.4e-13 79.0 79 49.4
Gohir.A01G078800 Gossypium hirsutum HOM05D001404 ORTHO05D002309 4.4e-13 78.6 80 47.5
Gorai.002G087800 Gossypium raimondii HOM05D001404 ORTHO05D002309 4.4e-13 78.6 80 47.5
Nitab4.5_0000653g0040 Nicotiana tabacum HOM05D001404 ORTHO05D002309 4.4e-13 78.6 79 50.6
SGA_v2.0_scaffold9G05074 Striga asiatica HOM05D001404 ORTHO05D002309 4.4e-13 78.6 94 44.7
TAR629G2836 Trochodendron aralioides HOM05D001404 ORTHO05D002309 4.4e-13 78.6 82 46.3
AL8G30330 Arabidopsis lyrata HOM05D001404 ORTHO05D002309 5.7e-13 78.2 81 45.7
MBI02_g22100_MAGBIO Magnolia biondii HOM05D001404 ORTHO05D002309 5.7e-13 78.2 81 43.2
PSO541G0820 Papaver somniferum HOM05D001404 ORTHO05D002309 7.5e-13 77.8 81 44.4
PSO675G4017 Papaver somniferum HOM05D001404 ORTHO05D002309 7.5e-13 77.8 81 44.4
Peaxi162Scf00450g00740 Petunia axillaris HOM05D001404 ORTHO05D002309 7.5e-13 77.8 80 47.5
SHI26632 Sapria himalayana HOM05D001404 ORTHO05D002309 9.8e-13 77.4 90 43.3
PGSC0003DMG402022324 Solanum tuberosum HOM05D001404 ORTHO05D002309 9.8e-13 77.4 79 48.1
vmacro11733 Vaccinium macrocarpon HOM05D001404 ORTHO05D002309 9.8e-13 77.4 80 46.2
Carub.0008s1517 Capsella rubella HOM05D001404 ORTHO05D002309 1.3e-12 77.0 81 45.7
Oeu042930.1 Olea europaea HOM05D001404 ORTHO05D002309 1.3e-12 77.0 79 45.6
Aqoxy1G03263 Aquilegia oxysepala HOM05D001404 ORTHO05D002309 1.7e-12 76.6 81 44.4
CARHR268210 Cardamine hirsuta HOM05D001404 ORTHO05D002309 1.7e-12 76.6 80 45.0
Sopen07g032630 Solanum pennellii HOM05D001404 ORTHO05D002309 1.7e-12 76.6 79 48.1
Nitab4.5_0000749g0160 Nicotiana tabacum HOM05D001404 ORTHO05D002309 2.2e-12 76.3 79 48.1
Peaxi162Scf01097g00315 Petunia axillaris HOM05D001404 ORTHO05D002309 2.2e-12 76.3 75 50.7
GSVIVG01037621001 Vitis vinifera HOM05D001404 ORTHO05D002309 3.7e-12 75.5 80 43.8
Gohir.D01G065900 Gossypium hirsutum HOM05D001404 ORTHO05D002309 1.8e-11 73.2 80 46.2
Hma1.2p1_0673F.1_g201220 Hydrangea macrophylla HOM05D001404 ORTHO05D002309 2.4e-11 72.8 80 42.5
Actinidia10726 Actinidia chinensis HOM05D001404 ORTHO05D002309 3.1e-11 72.4 80 45.0
Actinidia35336 Actinidia chinensis HOM05D001404 ORTHO05D002309 3.1e-11 72.4 81 44.4
BcaB08g35855 Brassica carinata HOM05D001404 ORTHO05D002309 3.1e-11 72.4 81 43.2
BraA10t43317Z Brassica rapa HOM05D001404 ORTHO05D002309 3.1e-11 72.4 81 43.2
A10p12210 Brassica napus HOM05D001404 ORTHO05D002309 4.1e-11 72.0 81 43.2
vmacro09728 Vaccinium macrocarpon HOM05D001404 ORTHO05D002309 4.1e-11 72.0 80 41.2
Ciclev10008210m.g Citrus clementina HOM05D001404 ORTHO05D002309 5.4e-11 71.6 47 63.8
Os01g0793500 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D002309 5.4e-11 71.6 106 40.6
HPP92_017600 Vanilla planifolia HOM05D001404 ORTHO05D002309 5.4e-11 71.6 80 43.8
PGSC0003DMG402001095 Solanum tuberosum HOM05D001404 ORTHO05D002309 7.0e-11 71.2 79 46.8
BcaC04g20289 Brassica carinata HOM05D001404 ORTHO05D002309 9.2e-11 70.9 83 39.8
C09p45430 Brassica napus HOM05D001404 ORTHO05D002309 9.2e-11 70.9 83 39.8
BolC9t57412H Brassica oleracea HOM05D001404 ORTHO05D002309 9.2e-11 70.9 83 39.8
CDE05G1391 Ceratophyllum demersum HOM05D001404 ORTHO05D002309 1.2e-10 70.5 54 55.6
Sopen12g001120 Solanum pennellii HOM05D001404 ORTHO05D002309 1.6e-10 70.1 53 60.4
unitig_26.g9959 Utricularia gibba HOM05D001404 ORTHO05D026306 2.7e-10 69.3 72 47.2
DCAR_022555 Daucus carota HOM05D001404 ORTHO05D002309 3.5e-10 68.9 50 60.0
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 1.7e-09 66.6 53 52.8
GSVIVG01037617001 Vitis vinifera HOM05D001404 ORTHO05D002309 1.9e-08 63.2 53 49.1
Mapoly0033s0144 Marchantia polymorpha HOM05D001404 ORTHO05D002309 5.6e-08 61.6 82 40.2
Ah.16g109590 Amaranthus hybridus HOM05D002531 ORTHO05D003018 3.6e-07 58.9 58 50.0
Zm00001eb000150 Zea mays HOM05D001404 ORTHO05D026306 4.7e-07 58.5 55 45.5
SEGI_23380 Sequoiadendron giganteum HOM05D001404 ORTHO05D002309 6.1e-07 58.2 103 32.0
ATR0712G122 Amborella trichopoda HOM05D001404 ORTHO05D002309 1.0e-06 57.4 82 32.9
SMO353G0091 Selaginella moellendorffii HOM05D001404 ORTHO05D002309 2.3e-06 56.2 94 37.2
Manes.01G195400 Manihot esculenta HOM05D001404 ORTHO05D002309 4.0e-06 55.5 84 36.9
Actinidia08187 Actinidia chinensis HOM05D001404 ORTHO05D002309 5.2e-06 55.1 82 35.4
Thhalv10018393m.g Eutrema salsugineum HOM05D001404 ORTHO05D002309 5.2e-06 55.1 84 35.7
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 6.8e-06 54.7 82 36.6
QL03p067260 Quercus lobata HOM05D001404 ORTHO05D002309 8.9e-06 54.3 84 38.1
Sp5g25270 Schrenkiella parvula HOM05D001404 ORTHO05D002309 8.9e-06 54.3 84 36.9
TAR374G0054 Trochodendron aralioides HOM05D001404 ORTHO05D002309 8.9e-06 54.3 84 34.5
Zm00001eb311860 Zea mays HOM05D001404 ORTHO05D002309 8.9e-06 54.3 105 37.1


User provided reference genes

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