Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0773800 Oryza sativa ssp. japonica HOM05D007216 ORTHO05D049898 1.4e-125 453.4 307 100.0
Zm00001eb370010 Zea mays HOM05D007216 ORTHO05D049898 9.7e-42 174.9 247 49.8
Zm00001eb056760 Zea mays HOM05D007216 ORTHO05D009261 6.4e-17 92.4 173 41.0
Os03g0741100 Oryza sativa ssp. japonica HOM05D007216 ORTHO05D009261 1.0e-14 85.1 157 39.5
HPP92_027840 Vanilla planifolia HOM05D007216 ORTHO05D009261 1.4e-11 74.7 210 32.9
RcHm_v2.0_Chr4g0390311 Rosa chinensis HOM05D007216 ORTHO05D009261 8.9e-11 72.0 195 32.8
Thecc.04G245800 Theobroma cacao HOM05D007216 ORTHO05D009261 1.5e-10 71.2 150 35.3
Cfa008380 Carpinus fangiana HOM05D007216 ORTHO05D009261 9.8e-10 68.6 146 34.2
Haze_11297 Corylus avellana HOM05D007216 ORTHO05D009261 9.8e-10 68.6 195 30.8
FvH4_4g02610 Fragaria vesca HOM05D007216 ORTHO05D009261 9.8e-10 68.6 195 32.8
CSS0019068 Camellia sinensis var. sinensis HOM05D007216 ORTHO05D009261 2.9e-09 67.0 149 32.9
BcaC06g34638 Brassica carinata HOM05D007216 ORTHO05D009261 4.9e-09 66.2 200 33.5
C07p26230 Brassica napus HOM05D007216 ORTHO05D009261 4.9e-09 66.2 200 33.5
BolC7t43151H Brassica oleracea HOM05D007216 ORTHO05D009261 4.9e-09 66.2 200 33.5
Haze_11299 Corylus avellana HOM05D007216 ORTHO05D009261 4.9e-09 66.2 195 29.7
FAN12G1817 Fragaria x ananassa HOM05D007216 ORTHO05D009261 8.3e-09 65.5 180 33.9
MD16G1208400 Malus domestica HOM05D007216 ORTHO05D009261 1.1e-08 65.1 196 27.6
Ciclev10005777m.g Citrus clementina HOM05D007216 ORTHO05D009261 1.9e-08 64.3 195 29.7
QL06p015626 Quercus lobata HOM05D007216 ORTHO05D009261 2.4e-08 63.9 149 33.6
Eucgr.H00196 Eucalyptus grandis HOM05D007216 ORTHO05D009261 3.2e-08 63.5 148 31.8
GSVIVG01018111001 Vitis vinifera HOM05D007216 ORTHO05D009261 3.2e-08 63.5 167 31.7
Eucgr.J01563 Eucalyptus grandis HOM05D007216 ORTHO05D009261 7.0e-08 62.4 148 32.4
Potri.008G161800 Populus trichocarpa HOM05D007216 ORTHO05D009261 7.0e-08 62.4 190 28.9
A06p47770 Brassica napus HOM05D007216 ORTHO05D009261 1.6e-07 61.2 201 30.8
Prupe.1G030500 Prunus persica HOM05D007216 ORTHO05D009261 2.0e-07 60.8 197 29.4
CiPaw.01G190600 Carya illinoinensis HOM05D007216 ORTHO05D009261 2.7e-07 60.5 212 29.2
HPP92_023463 Vanilla planifolia HOM05D007216 ORTHO05D009261 2.7e-07 60.5 184 36.4
Duzib151G0820 Durio zibethinus HOM05D007216 ORTHO05D009261 3.5e-07 60.1 196 27.0
PGR031G3332 Punica granatum HOM05D007216 ORTHO05D009261 4.6e-07 59.7 157 29.3
HPP92_023468 Vanilla planifolia HOM05D007216 ORTHO05D009261 4.6e-07 59.7 200 33.5
Duzib151G0028 Durio zibethinus HOM05D007216 ORTHO05D009261 6.0e-07 59.3 196 27.0
Actinidia08446 Actinidia chinensis HOM05D007216 ORTHO05D009261 7.8e-07 58.9 201 29.4
BcaC06g31685 Brassica carinata HOM05D007216 ORTHO05D009261 7.8e-07 58.9 197 28.4
Solyc09g083360.3 Solanum lycopersicum HOM05D007216 ORTHO05D009261 7.8e-07 58.9 150 29.3
Actinidia05467 Actinidia chinensis HOM05D007216 ORTHO05D009261 1.0e-06 58.5 151 30.5
ATR0665G548 Amborella trichopoda HOM05D007216 ORTHO05D009261 1.3e-06 58.2 206 28.6
Nn3g19525 Nelumbo nucifera HOM05D007216 ORTHO05D009261 1.3e-06 58.2 212 28.3
Potri.010G077000 Populus trichocarpa HOM05D007216 ORTHO05D009261 1.3e-06 58.2 155 34.8
Sopen09g032280 Solanum pennellii HOM05D007216 ORTHO05D009261 1.7e-06 57.8 150 28.7
CANSAT78G2280 Cannabis sativa HOM05D007216 ORTHO05D009261 2.3e-06 57.4 152 27.6
Sabra10G0031800 Salix brachista HOM05D007216 ORTHO05D009261 2.3e-06 57.4 143 31.5
Duzib052G0756 Durio zibethinus HOM05D007216 ORTHO05D009261 3.0e-06 57.0 198 26.8
Aa31LG5G3580 Aethionema arabicum HOM05D007216 ORTHO05D009261 3.9e-06 56.6 196 27.6
MD13G1206900 Malus domestica HOM05D007216 ORTHO05D009261 3.9e-06 56.6 196 26.0
Cpa.g.sc58.45 Carica papaya HOM05D007216 ORTHO05D009261 8.6e-06 55.5 155 27.7
Medtr1g040435 Medicago truncatula HOM05D007216 ORTHO05D009261 8.6e-06 55.5 194 26.8
Rhsim02G0032900 Rhododendron simsii HOM05D007216 ORTHO05D009261 8.6e-06 55.5 195 29.2


User provided reference genes

Program Settings