Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0744200 Oryza sativa ssp. japonica HOM05D006831 ORTHO05D008256 5.4e-226 787.3 401 100.0
Zm00001eb153550 Zea mays HOM05D006831 ORTHO05D008256 2.1e-116 423.3 403 61.3
CSS0014632 Camellia sinensis var. sinensis HOM05D006831 ORTHO05D008256 7.0e-40 169.1 385 34.3
vmacro18857 Vaccinium macrocarpon HOM05D006831 ORTHO05D008256 7.7e-39 165.6 386 36.8
HPP92_006371 Vanilla planifolia HOM05D006831 ORTHO05D008256 5.0e-38 162.9 384 34.9
Dinv30442 Davidia involucrata HOM05D006831 ORTHO05D008256 8.5e-38 162.2 394 33.0
Eucgr.F03071 Eucalyptus grandis HOM05D006831 ORTHO05D008256 2.5e-37 160.6 404 34.4
Ciclev10025849m.g Citrus clementina HOM05D006831 ORTHO05D008256 3.2e-37 160.2 397 33.5
Rhsim08G0227100 Rhododendron simsii HOM05D006831 ORTHO05D008256 1.2e-36 158.3 383 34.5
Duzib235G1306 Durio zibethinus HOM05D006831 ORTHO05D008256 3.6e-36 156.8 385 32.7
MBI04_g30107_MAGBIO Magnolia biondii HOM05D006831 ORTHO05D008256 8.0e-36 155.6 388 34.8
COL.COLO4_30498 Corchorus olitorius HOM05D006831 ORTHO05D008256 1.0e-35 155.2 390 33.1
Thecc.06G098700 Theobroma cacao HOM05D006831 ORTHO05D008256 1.4e-35 154.8 385 33.8
TAR626G1633 Trochodendron aralioides HOM05D006831 ORTHO05D008256 1.4e-35 154.8 386 33.4
QL05p020342 Quercus lobata HOM05D006831 ORTHO05D008256 4.0e-35 153.3 326 34.4
CiPaw.02G146100 Carya illinoinensis HOM05D006831 ORTHO05D008256 6.8e-35 152.5 391 33.0
Actinidia21708 Actinidia chinensis HOM05D006831 ORTHO05D008256 2.6e-34 150.6 383 34.7
Hma1.2p1_0430F.1_g151466 Hydrangea macrophylla HOM05D006831 ORTHO05D008256 2.6e-34 150.6 398 32.2
TAR383G0884 Trochodendron aralioides HOM05D006831 ORTHO05D008256 3.4e-34 150.2 385 33.0
Oeu050599.1 Olea europaea HOM05D006831 ORTHO05D008256 4.4e-34 149.8 396 31.3
MSTRG.11030 Avicennia marina HOM05D006831 ORTHO05D008256 3.7e-33 146.7 401 31.2
CiPaw.01G232000 Carya illinoinensis HOM05D006831 ORTHO05D008256 3.7e-33 146.7 398 32.4
Nn6g35309 Nelumbo nucifera HOM05D006831 ORTHO05D008256 6.3e-33 146.0 394 32.0
Potri.001G189400 Populus trichocarpa HOM05D006831 ORTHO05D008256 6.3e-33 146.0 391 32.2
Potri.011G047800 Populus trichocarpa HOM05D006831 ORTHO05D008256 6.3e-33 146.0 388 33.2
VMungo0331G1511 Vigna mungo HOM05D006831 ORTHO05D008256 6.3e-33 146.0 406 30.5
Cc04_g02630 Coffea canephora HOM05D006831 ORTHO05D008256 8.3e-33 145.6 336 31.8
Glyma.07G015900 Glycine max HOM05D006831 ORTHO05D008256 1.1e-32 145.2 389 29.0
Phvul.010G145700 Phaseolus vulgaris HOM05D006831 ORTHO05D008256 1.4e-32 144.8 389 30.8
AUR62031907 Chenopodium quinoa HOM05D006831 ORTHO05D008256 1.8e-32 144.4 321 32.1
Glyma.08G201400 Glycine max HOM05D006831 ORTHO05D008256 2.4e-32 144.1 381 29.4
Cfa003655 Carpinus fangiana HOM05D006831 ORTHO05D008256 4.1e-32 143.3 326 34.4
Gorai.011G071900 Gossypium raimondii HOM05D006831 ORTHO05D008256 4.1e-32 143.3 390 32.1
Lalb_Chr04g0262951 Lupinus albus HOM05D006831 ORTHO05D008256 5.4e-32 142.9 323 33.7
Gohir.D10G067400 Gossypium hirsutum HOM05D006831 ORTHO05D008256 7.0e-32 142.5 392 31.1
RcHm_v2.0_Chr2g0140341 Rosa chinensis HOM05D006831 ORTHO05D008256 9.1e-32 142.1 385 31.7
Gohir.A10G066100 Gossypium hirsutum HOM05D006831 ORTHO05D008256 1.2e-31 141.7 390 31.3
Atru.chr1.3517 Acer truncatum HOM05D006831 ORTHO05D008256 2.7e-31 140.6 398 31.4
Lj5A54G57 Lonicera japonica HOM05D006831 ORTHO05D008256 2.3e-30 137.5 385 31.9
Ca_23268_v3 Cicer arietinum L. HOM05D006831 ORTHO05D008256 2.9e-30 137.1 321 31.5
Haze_06254 Corylus avellana HOM05D006831 ORTHO05D008256 2.9e-30 137.1 327 34.3
Sabra01G0151300 Salix brachista HOM05D006831 ORTHO05D008256 5.0e-30 136.3 330 33.0
Sabra11G0033200 Salix brachista HOM05D006831 ORTHO05D008256 5.0e-30 136.3 387 32.0
Prupe.3G060100 Prunus persica HOM05D006831 ORTHO05D008256 8.6e-30 135.6 390 31.5
Lj3g0006655 Lotus japonicus HOM05D006831 ORTHO05D008256 1.1e-29 135.2 394 28.9
Gohir.A02G117700 Gossypium hirsutum HOM05D006831 ORTHO05D008256 2.5e-29 134.0 324 32.4
FvH4_6g32300 Fragaria vesca HOM05D006831 ORTHO05D008256 3.2e-29 133.7 400 31.5
arahy.Tifrunner.gnm1.ann1.U3LBHC Arachis hypogaea HOM05D006831 ORTHO05D008256 4.2e-29 133.3 393 30.0
FAN02G3719 Fragaria x ananassa HOM05D006831 ORTHO05D008256 4.2e-29 133.3 331 32.6
arahy.Tifrunner.gnm1.ann1.4LXS91 Arachis hypogaea HOM05D006831 ORTHO05D008256 5.5e-29 132.9 395 29.9
DCAR_016191 Daucus carota HOM05D006831 ORTHO05D008256 5.5e-29 132.9 390 31.3
FAN05G2796 Fragaria x ananassa HOM05D006831 ORTHO05D008256 5.5e-29 132.9 331 33.2
Sed0018864 Sechium edule HOM05D006831 ORTHO05D008256 1.6e-28 131.3 322 33.5
TPR.G29201 Trifolium pratense HOM05D006831 ORTHO05D008256 2.1e-28 131.0 386 29.3
CANSAT56G0873 Cannabis sativa HOM05D006831 ORTHO05D008256 2.8e-28 130.6 395 30.1
Medtr8g014330 Medicago truncatula HOM05D006831 ORTHO05D008256 3.6e-28 130.2 390 30.0
MD09G1204500 Malus domestica HOM05D006831 ORTHO05D008256 4.7e-28 129.8 397 30.5
TWI12G0407 Tripterygium wilfordii HOM05D006831 ORTHO05D008256 8.0e-28 129.0 407 29.7
Gorai.003G062200 Gossypium raimondii HOM05D006831 ORTHO05D008256 1.8e-27 127.9 325 31.4
Lsat_1_v5_gn_1_36980 Lactuca sativa HOM05D006831 ORTHO05D008256 4.0e-27 126.7 326 33.1
Peaxi162Scf00038g00918 Petunia axillaris HOM05D006831 ORTHO05D008256 4.0e-27 126.7 393 29.3
Manes.11G034300 Manihot esculenta HOM05D006831 ORTHO05D008256 1.2e-26 125.2 312 31.4
Gohir.D03G058400 Gossypium hirsutum HOM05D006831 ORTHO05D008256 1.5e-26 124.8 325 31.1
PGR102G2866 Punica granatum HOM05D006831 ORTHO05D008256 2.0e-26 124.4 389 29.3
PSO210G4514 Papaver somniferum HOM05D006831 ORTHO05D008256 4.4e-26 123.2 420 29.3
CsaV3_3G023650 Cucumis sativus L. HOM05D006831 ORTHO05D008256 5.7e-26 122.9 332 32.2
FAN14G1280 Fragaria x ananassa HOM05D006831 ORTHO05D008256 5.7e-26 122.9 327 32.4
AUR62022199 Chenopodium quinoa HOM05D006831 ORTHO05D008256 7.5e-26 122.5 304 31.2
Sopen03g039800 Solanum pennellii HOM05D006831 ORTHO05D008256 9.8e-26 122.1 322 30.7
ECA247G2417 Erigeron canadensis HOM05D006831 ORTHO05D008256 1.3e-25 121.7 334 29.9
THA.LOC104801499 Tarenaya hassleriana HOM05D006831 ORTHO05D008256 3.7e-25 120.2 339 29.8
Aqoxy7G01449 Aquilegia oxysepala HOM05D006831 ORTHO05D008256 6.3e-25 119.4 389 28.3
PSO210G6112 Papaver somniferum HOM05D006831 ORTHO05D008256 1.4e-24 118.2 419 27.9
ClCG00G002730 Citrullus lanatus HOM05D006831 ORTHO05D008256 2.4e-24 117.5 318 31.8
ClCG07G013280 Citrullus lanatus HOM05D006831 ORTHO05D008256 2.4e-24 117.5 318 31.8
Phvul.005G166600 Phaseolus vulgaris HOM05D006831 ORTHO05D008256 2.4e-24 117.5 379 28.8
SalBow2G3477 Salvia bowleyana HOM05D006831 ORTHO05D008256 3.1e-24 117.1 317 30.0
Psat4g221040 Pisum sativum HOM05D006831 ORTHO05D008256 4.1e-24 116.7 311 30.5
Ah.01g022020 Amaranthus hybridus HOM05D006831 ORTHO05D008256 1.6e-23 114.8 326 29.4
Solyc03g120970.3 Solanum lycopersicum HOM05D006831 ORTHO05D008256 7.8e-23 112.5 387 28.2
VMungo1080G0645 Vigna mungo HOM05D006831 ORTHO05D008256 1.0e-22 112.1 379 27.7
PGSC0003DMG400002528 Solanum tuberosum HOM05D006831 ORTHO05D008256 1.3e-22 111.7 388 28.1
Migut.I00901 Erythranthe guttata HOM05D006831 ORTHO05D008256 3.8e-22 110.2 229 33.2
HanXRQChr10g0313251 Helianthus annuus HOM05D006831 ORTHO05D008256 5.0e-22 109.8 336 30.1
Aa31LG4G70 Aethionema arabicum HOM05D006831 ORTHO05D008256 6.6e-22 109.4 306 30.7
CAN.G1143.6 Capsicum annuum HOM05D006831 ORTHO05D008256 8.6e-22 109.0 392 26.3
Actinidia32697 Actinidia chinensis HOM05D006831 ORTHO05D008256 2.5e-21 107.5 291 31.6
EL10Ac9g21213 Beta vulgaris HOM05D006831 ORTHO05D008256 5.6e-21 106.3 334 28.1
Lsat_1_v5_gn_5_134400 Lactuca sativa HOM05D006831 ORTHO05D008256 5.6e-21 106.3 312 30.1
Cpa.g.sc109.6 Carica papaya HOM05D006831 ORTHO05D008256 9.5e-21 105.5 302 29.1
GSVIVG01017000001 Vitis vinifera HOM05D006831 ORTHO05D008256 9.5e-21 105.5 235 31.9
HanXRQChr02g0032201 Helianthus annuus HOM05D006831 ORTHO05D008256 4.4e-18 96.7 377 25.7
Sp5g36010 Schrenkiella parvula HOM05D006831 ORTHO05D008256 1.4e-16 91.7 302 28.1
AT1G79760 Arabidopsis thaliana HOM05D006831 ORTHO05D008256 2.4e-16 90.9 373 25.7
MELO3C012995.2 Cucumis melo HOM05D006831 ORTHO05D008256 3.2e-16 90.5 289 30.1
Thhalv10018887m.g Eutrema salsugineum HOM05D006831 ORTHO05D008256 9.2e-16 89.0 302 29.1
VMungo0331G1726 Vigna mungo HOM05D006831 ORTHO05D008256 1.2e-15 88.6 161 32.9
C06p28690 Brassica napus HOM05D006831 ORTHO05D008256 4.6e-15 86.7 309 27.8
BolC6t38038H Brassica oleracea HOM05D006831 ORTHO05D008256 1.0e-14 85.5 309 28.5
CARHR262750 Cardamine hirsuta HOM05D006831 ORTHO05D008256 3.0e-14 84.0 375 25.3
SGA_v2.0_scaffold66G22536 Striga asiatica HOM05D001613 ORTHO05D008256 3.9e-14 83.6 387 25.1
Nitab4.5_0012387g0010 Nicotiana tabacum HOM05D006831 ORTHO05D008256 1.1e-13 82.0 402 24.6
BcaC08g45266 Brassica carinata HOM05D006831 ORTHO05D008256 4.3e-13 80.1 293 28.3
A07p26290 Brassica napus HOM05D006831 ORTHO05D008256 4.3e-13 80.1 302 28.5
BraA07t30273Z Brassica rapa HOM05D006831 ORTHO05D008256 4.3e-13 80.1 302 28.5
AL2G41800 Arabidopsis lyrata HOM05D006831 ORTHO05D008256 1.2e-12 78.6 314 27.1
Carub.0002s2775 Capsella rubella HOM05D006831 ORTHO05D008256 1.6e-12 78.2 304 27.3
Hund00686 Selenicereus undatus HOM05D006831 ORTHO05D008256 8.0e-12 75.9 172 32.0
Nn2g10337 Nelumbo nucifera HOM05D006353 ORTHO05D007993 4.0e-11 73.6 359 25.3
TPR.G25775 Trifolium pratense HOM05D006831 ORTHO05D008256 5.8e-10 69.7 120 33.3
Dinv25324 Davidia involucrata HOM05D006353 ORTHO05D007993 1.7e-09 68.2 335 25.4
Haze_02695 Corylus avellana HOM05D006831 ORTHO05D008256 1.1e-08 65.5 56 48.2
Rhsim05G0229500 Rhododendron simsii HOM05D006353 ORTHO05D007993 1.6e-07 61.6 347 27.4
SEGI_28444 Sequoiadendron giganteum HOM05D007537 ORTHO05D008256 1.6e-07 61.6 322 25.5
SEGI_29994 Sequoiadendron giganteum HOM05D007537 ORTHO05D008256 1.6e-07 61.6 322 25.5
TAR636G2144 Trochodendron aralioides HOM05D006353 ORTHO05D007993 6.0e-07 59.7 361 23.0
Nitab4.5_0009505g0020 Nicotiana tabacum HOM05D006831 ORTHO05D008256 8.6e-06 55.8 187 31.0


User provided reference genes

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