Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0727500 Oryza sativa ssp. japonica HOM05D033128 ORTHO05D000227 1.2e-70 269.6 131 100.0
Glyma.13G222600 Glycine max HOM05D000355 ORTHO05D000227 4.8e-14 81.6 130 40.8
Zm00001eb361830 Zea mays HOM05D033128 ORTHO05D000227 6.9e-13 77.8 145 45.5
Lalb_Chr18g0055061 Lupinus albus HOM05D000355 ORTHO05D000227 9.0e-13 77.4 137 40.9
MBI06_g14253_MAGBIO Magnolia biondii HOM05D000355 ORTHO05D000227 1.2e-12 77.0 136 39.7
Manes.15G116100 Manihot esculenta HOM05D000355 ORTHO05D000227 1.5e-12 76.6 131 41.2
Nn3g20970 Nelumbo nucifera HOM05D000355 ORTHO05D000227 5.9e-12 74.7 144 38.9
Cfa021170 Carpinus fangiana HOM05D000355 ORTHO05D000227 7.6e-12 74.3 135 40.0
AT2G34340 Arabidopsis thaliana HOM05D000355 ORTHO05D000227 1.7e-11 73.2 139 38.8
Glyma.15G089600 Glycine max HOM05D000355 ORTHO05D000227 3.8e-11 72.0 124 39.5
Nn6g34398 Nelumbo nucifera HOM05D000355 ORTHO05D000227 3.8e-11 72.0 134 38.1
BcaB06g28750 Brassica carinata HOM05D000355 ORTHO05D000227 5.0e-11 71.6 90 48.9
Nn6g34395 Nelumbo nucifera HOM05D000355 ORTHO05D000227 6.5e-11 71.2 140 40.0
CiPaw.10G098200 Carya illinoinensis HOM05D000355 ORTHO05D000227 8.4e-11 70.9 133 39.1
BcaC01g00121 Brassica carinata HOM05D000355 ORTHO05D000227 1.1e-10 70.5 147 37.4
C03p75990 Brassica napus HOM05D000355 ORTHO05D000227 1.1e-10 70.5 147 37.4
BolC3t19852H Brassica oleracea HOM05D000355 ORTHO05D000227 1.1e-10 70.5 147 37.4
Potri.011G076900 Populus trichocarpa HOM05D000355 ORTHO05D000227 1.1e-10 70.5 79 53.2
THA.LOC104812655 Tarenaya hassleriana HOM05D000355 ORTHO05D000227 1.1e-10 70.5 139 41.0
BcaC02g11498 Brassica carinata HOM05D000355 ORTHO05D000227 1.4e-10 70.1 91 46.2
A07p10440 Brassica napus HOM05D000355 ORTHO05D000227 1.4e-10 70.1 139 37.4
BraA07t28844Z Brassica rapa HOM05D000355 ORTHO05D000227 1.4e-10 70.1 139 37.4
AL1G43470 Arabidopsis lyrata HOM05D000355 ORTHO05D000227 1.9e-10 69.7 82 52.4
C07p16070 Brassica napus HOM05D000355 ORTHO05D000227 2.5e-10 69.3 108 43.5
BolC7t42093H Brassica oleracea HOM05D000355 ORTHO05D000227 2.5e-10 69.3 108 43.5
Gohir.A06G135204 Gossypium hirsutum HOM05D000355 ORTHO05D000227 2.5e-10 69.3 81 51.9
TAR627G0345 Trochodendron aralioides HOM05D000355 ORTHO05D000227 2.5e-10 69.3 139 41.0
BcaB03g12166 Brassica carinata HOM05D000355 ORTHO05D000227 3.2e-10 68.9 139 37.4
TAR626G1976 Trochodendron aralioides HOM05D000355 ORTHO05D000227 3.2e-10 68.9 143 37.8
BcaB07g32554 Brassica carinata HOM05D000355 ORTHO05D000227 4.2e-10 68.6 81 49.4
BcaC06g35446 Brassica carinata HOM05D000355 ORTHO05D000227 4.2e-10 68.6 106 43.4
C07p16080 Brassica napus HOM05D000355 ORTHO05D000227 4.2e-10 68.6 137 37.2
BcaC06g35448 Brassica carinata HOM05D028642 ORTHO05D000227 5.5e-10 68.2 103 44.7
TWI73G0934 Tripterygium wilfordii HOM05D000355 ORTHO05D000227 5.5e-10 68.2 81 50.6
AT1G29640 Arabidopsis thaliana HOM05D000355 ORTHO05D000227 7.2e-10 67.8 145 36.6
Lalb_Chr20g0117651 Lupinus albus HOM05D000355 ORTHO05D000227 7.2e-10 67.8 128 39.8
Sed0005577 Sechium edule HOM05D000355 ORTHO05D000227 7.2e-10 67.8 133 37.6
AL4G30290 Arabidopsis lyrata HOM05D000355 ORTHO05D000227 9.3e-10 67.4 137 38.0
C04p14700 Brassica napus HOM05D000355 ORTHO05D000227 9.3e-10 67.4 92 44.6
BolC4t23049H Brassica oleracea HOM05D000355 ORTHO05D000227 9.3e-10 67.4 92 44.6
A05p11340 Brassica napus HOM05D000355 ORTHO05D000227 1.2e-09 67.0 92 44.6
BraA05t20083Z Brassica rapa HOM05D000355 ORTHO05D000227 1.2e-09 67.0 92 44.6
Ca_00498_v3 Cicer arietinum L. HOM05D000355 ORTHO05D000227 1.6e-09 66.6 139 37.4
Migut.M00972 Erythranthe guttata HOM05D000355 ORTHO05D000227 1.6e-09 66.6 135 38.5
Sed0019223 Sechium edule HOM05D000355 ORTHO05D000227 1.6e-09 66.6 131 39.7
Gohir.D06G140400 Gossypium hirsutum HOM05D000355 ORTHO05D000227 2.1e-09 66.2 148 37.8
Gorai.010G163800 Gossypium raimondii HOM05D000355 ORTHO05D000227 2.1e-09 66.2 148 37.8
BcaB03g13870 Brassica carinata HOM05D000355 ORTHO05D000227 2.7e-09 65.9 135 38.5
A08p24990 Brassica napus HOM05D000355 ORTHO05D000227 2.7e-09 65.9 152 36.2
BraA08t34454Z Brassica rapa HOM05D000355 ORTHO05D000227 2.7e-09 65.9 152 36.2
Lalb_Chr15g0086551 Lupinus albus HOM05D000355 ORTHO05D000227 2.7e-09 65.9 137 37.2
TWI09G0139 Tripterygium wilfordii HOM05D000355 ORTHO05D000227 2.7e-09 65.9 79 49.4
Migut.H01394 Erythranthe guttata HOM05D000355 ORTHO05D000227 3.5e-09 65.5 128 39.1
Sabra11G0064000 Salix brachista HOM05D000355 ORTHO05D000227 3.5e-09 65.5 131 40.5
ClCG01G024130 Citrullus lanatus HOM05D000355 ORTHO05D000227 6.1e-09 64.7 140 35.7
Sp4g16600 Schrenkiella parvula HOM05D000355 ORTHO05D000227 6.1e-09 64.7 91 47.3
Thhalv10017404m.g Eutrema salsugineum HOM05D000355 ORTHO05D000227 7.9e-09 64.3 95 45.3
Actinidia16758 Actinidia chinensis HOM05D000355 ORTHO05D000227 1.0e-08 63.9 143 37.1
CARHR128400 Cardamine hirsuta HOM05D000355 ORTHO05D000227 1.0e-08 63.9 136 36.8
Gohir.A10G032700 Gossypium hirsutum HOM05D000355 ORTHO05D000227 1.0e-08 63.9 88 46.6
Gohir.D10G033400 Gossypium hirsutum HOM05D000355 ORTHO05D000227 1.0e-08 63.9 88 46.6
Gorai.011G035200 Gossypium raimondii HOM05D000355 ORTHO05D000227 1.0e-08 63.9 88 46.6
BcaB02g09559 Brassica carinata HOM05D000355 ORTHO05D000227 1.3e-08 63.5 134 37.3
SalBow7G2054 Salvia bowleyana HOM05D000355 ORTHO05D000227 1.3e-08 63.5 127 39.4
SalBow7G4038 Salvia bowleyana HOM05D000355 ORTHO05D000227 1.3e-08 63.5 127 39.4
Thhalv10009054m.g Eutrema salsugineum HOM05D000355 ORTHO05D000227 1.8e-08 63.2 105 43.8
PSO675G4422 Papaver somniferum HOM05D000355 ORTHO05D000227 1.8e-08 63.2 153 32.0
QL05p052752 Quercus lobata HOM05D000355 ORTHO05D000227 1.8e-08 63.2 141 36.2
CiPaw.09G132200 Carya illinoinensis HOM05D000355 ORTHO05D000227 2.3e-08 62.8 139 38.1
Aa31LG6G6020 Aethionema arabicum HOM05D000355 ORTHO05D000227 3.0e-08 62.4 86 45.3
BolC4t27837H Brassica oleracea HOM05D000355 ORTHO05D000227 3.0e-08 62.4 104 42.3
MELO3C007178.2 Cucumis melo HOM05D000355 ORTHO05D000227 3.0e-08 62.4 84 44.0
Os05g0531000 Oryza sativa ssp. japonica HOM05D033128 ORTHO05D293580 3.0e-08 62.4 155 36.8
Thecc.06G159900 Theobroma cacao HOM05D000355 ORTHO05D000227 3.0e-08 62.4 146 37.7
Gorai.009G158800 Gossypium raimondii HOM05D000355 ORTHO05D000227 3.9e-08 62.0 83 44.6
Lj6g0019053 Lotus japonicus HOM05D000355 ORTHO05D000227 3.9e-08 62.0 136 36.8
Phvul.006G168600 Phaseolus vulgaris HOM05D000355 ORTHO05D000227 3.9e-08 62.0 130 36.2
ATR0737G162 Amborella trichopoda HOM05D000355 ORTHO05D000227 5.1e-08 61.6 131 35.1
MD00G1093200 Malus domestica HOM05D000355 ORTHO05D000227 5.1e-08 61.6 85 48.2
VMungo0540G1759 Vigna mungo HOM05D000355 ORTHO05D000227 5.1e-08 61.6 131 38.2
Gohir.D05G154500 Gossypium hirsutum HOM05D000355 ORTHO05D000227 8.7e-08 60.8 141 34.8
Gohir.D06G205800 Gossypium hirsutum HOM05D000355 ORTHO05D000227 8.7e-08 60.8 127 37.8
Gorai.010G240100 Gossypium raimondii HOM05D000355 ORTHO05D000227 8.7e-08 60.8 127 37.8
Psat1g192560 Pisum sativum HOM05D000355 ORTHO05D000227 8.7e-08 60.8 132 35.6
Duzib235G1481 Durio zibethinus HOM05D000355 ORTHO05D000227 1.1e-07 60.5 148 34.5
PSO675G3834 Papaver somniferum HOM05D000355 ORTHO05D000227 1.1e-07 60.5 87 46.0
PGR042G3548 Punica granatum HOM05D000355 ORTHO05D000227 1.1e-07 60.5 144 37.5
MSTRG.16191 Avicennia marina HOM05D000355 ORTHO05D000227 1.5e-07 60.1 137 37.2
C04p63700 Brassica napus HOM05D000355 ORTHO05D000227 1.5e-07 60.1 105 41.0
CAN.G569.5 Capsicum annuum HOM05D000355 ORTHO05D000227 1.5e-07 60.1 93 43.0
PSO541G3152 Papaver somniferum HOM05D000355 ORTHO05D000227 1.5e-07 60.1 150 31.3
Migut.M00973 Erythranthe guttata HOM05D000355 ORTHO05D000227 1.9e-07 59.7 135 38.5
Gohir.A06G198400 Gossypium hirsutum HOM05D000355 ORTHO05D000227 1.9e-07 59.7 127 37.8
CSS0043298 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 2.5e-07 59.3 141 34.0
Gohir.A05G152000 Gossypium hirsutum HOM05D000355 ORTHO05D000227 2.5e-07 59.3 137 33.6
Manes.17G062700 Manihot esculenta HOM05D000355 ORTHO05D000227 2.5e-07 59.3 129 35.7
Aqoxy1G01887 Aquilegia oxysepala HOM05D000355 ORTHO05D000227 3.3e-07 58.9 126 36.5
CSS0049567 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 3.3e-07 58.9 138 34.1
PSO541G2286 Papaver somniferum HOM05D000355 ORTHO05D000227 3.3e-07 58.9 53 60.4
SalBow8G0398 Salvia bowleyana HOM05D000355 ORTHO05D000227 3.3e-07 58.9 80 47.5
SalBow8G4340 Salvia bowleyana HOM05D000355 ORTHO05D000227 3.3e-07 58.9 80 47.5
FvH4_3g06450 Fragaria vesca HOM05D000355 ORTHO05D000227 4.3e-07 58.5 55 58.2
Sp1g25540 Schrenkiella parvula HOM05D000355 ORTHO05D000227 4.3e-07 58.5 99 41.4
THA.LOC104820624 Tarenaya hassleriana HOM05D000355 ORTHO05D000227 4.3e-07 58.5 142 35.9
BcaC05g26984 Brassica carinata HOM05D000355 ORTHO05D000227 5.7e-07 58.2 141 36.2
A04p26300 Brassica napus HOM05D000355 ORTHO05D000227 5.7e-07 58.2 143 35.0
C05p28450 Brassica napus HOM05D000355 ORTHO05D000227 5.7e-07 58.2 141 36.2
BolC5t31570H Brassica oleracea HOM05D000355 ORTHO05D000227 5.7e-07 58.2 141 36.2
Cc09_g10000 Coffea canephora HOM05D000355 ORTHO05D000227 5.7e-07 58.2 142 33.1
MD10G1269600 Malus domestica HOM05D000355 ORTHO05D000227 5.7e-07 58.2 88 45.5
Oeu021539.1 Olea europaea HOM05D000355 ORTHO05D000227 5.7e-07 58.2 144 35.4
RcHm_v2.0_Chr5g0012841 Rosa chinensis HOM05D000355 ORTHO05D000227 5.7e-07 58.2 55 56.4
Aa31LG9G7420 Aethionema arabicum HOM05D000355 ORTHO05D000227 7.4e-07 57.8 126 37.3
CANSAT35G0775 Cannabis sativa HOM05D000355 ORTHO05D000227 7.4e-07 57.8 53 58.5
Carub.0004s1599 Capsella rubella HOM05D000355 ORTHO05D000227 7.4e-07 57.8 53 58.5
Duzib160G0443 Durio zibethinus HOM05D000355 ORTHO05D000227 7.4e-07 57.8 143 36.4
Os01g0727700 Oryza sativa ssp. japonica HOM05D000355 ORTHO05D000227 7.4e-07 57.8 64 53.1
CARHR028960 Cardamine hirsuta HOM05D000355 ORTHO05D000227 9.7e-07 57.4 144 33.3
Ciclev10017454m.g Citrus clementina HOM05D000355 ORTHO05D000227 9.7e-07 57.4 57 56.1
Rhsim02G0151500 Rhododendron simsii HOM05D000355 ORTHO05D000227 9.7e-07 57.4 134 36.6
ClCG03G007260 Citrullus lanatus HOM05D000355 ORTHO05D000227 1.3e-06 57.0 80 46.2
Prupe.4G072000 Prunus persica HOM05D000355 ORTHO05D000227 1.3e-06 57.0 145 35.9
unitig_748.g7586 Utricularia gibba HOM05D000355 ORTHO05D000227 1.3e-06 57.0 124 37.9
CSS0013247 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 1.6e-06 56.6 137 33.6
FAN21G0280 Fragaria x ananassa HOM05D000355 ORTHO05D000227 1.6e-06 56.6 55 56.4
Hma1.2p1_0015F.1_g010590 Hydrangea macrophylla HOM05D000355 ORTHO05D000227 1.6e-06 56.6 133 33.1
Sed0025484 Sechium edule HOM05D000355 ORTHO05D000227 1.6e-06 56.6 79 43.0
SGA_v2.0_scaffold1G00118 Striga asiatica HOM05D000355 ORTHO05D000227 1.6e-06 56.6 79 45.6
Actinidia19475 Actinidia chinensis HOM05D000355 ORTHO05D000227 2.2e-06 56.2 138 34.8
arahy.Tifrunner.gnm1.ann1.5DZ9UG Arachis hypogaea HOM05D000355 ORTHO05D000227 2.2e-06 56.2 132 36.4
COL.COLO4_22818 Corchorus olitorius HOM05D000355 ORTHO05D000227 2.2e-06 56.2 53 56.6
MELO3C002696.2 Cucumis melo HOM05D000355 ORTHO05D000227 2.2e-06 56.2 79 43.0
Sc24g0001950 Simmondsia chinensis HOM05D000355 ORTHO05D000227 2.2e-06 56.2 140 33.6
Duzib192G0667 Durio zibethinus HOM05D000355 ORTHO05D000227 2.8e-06 55.8 88 45.5
ECA236G3768 Erigeron canadensis HOM05D000355 ORTHO05D000227 2.8e-06 55.8 51 62.7
SalBow8G0395 Salvia bowleyana HOM05D000355 ORTHO05D000227 2.8e-06 55.8 65 44.6
CSS0044867 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 3.7e-06 55.5 50 60.0
Thhalv10001226m.g Eutrema salsugineum HOM05D000355 ORTHO05D000227 3.7e-06 55.5 128 35.2
Zm00001eb154350 Zea mays HOM05D000355 ORTHO05D000227 3.7e-06 55.5 95 43.2
Medtr2g018175 Medicago truncatula HOM05D000355 ORTHO05D000227 4.8e-06 55.1 80 43.8
BraA08t33402Z Brassica rapa HOM05D000355 ORTHO05D000227 6.3e-06 54.7 127 37.0
vmacro03989 Vaccinium macrocarpon HOM05D000355 ORTHO05D000227 6.3e-06 54.7 51 56.9
AT5G45630 Arabidopsis thaliana HOM05D000355 ORTHO05D000227 8.2e-06 54.3 132 36.4
CSS0021028 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 8.2e-06 54.3 51 56.9
CSS0041883 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 8.2e-06 54.3 51 56.9
Carub.0001s2786 Capsella rubella HOM05D000355 ORTHO05D000227 8.2e-06 54.3 51 56.9
HanXRQChr17g0563551 Helianthus annuus HOM05D000355 ORTHO05D000227 8.2e-06 54.3 60 53.3


User provided reference genes

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