Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0725900 Oryza sativa ssp. japonica HOM05D003009 ORTHO05D001701 5.4e-98 360.9 173 100.0
Zm00001eb361780 Zea mays HOM05D003009 ORTHO05D001701 3.7e-54 215.3 162 64.8
Zm00001eb154410 Zea mays HOM05D003009 ORTHO05D001701 1.4e-45 186.8 178 57.9
Zm00001eb293200 Zea mays HOM05D003009 ORTHO05D001701 3.3e-39 165.6 133 60.2
Os05g0531400 Oryza sativa ssp. japonica HOM05D003009 ORTHO05D001701 5.0e-35 151.8 168 49.4
Os05g0531200 Oryza sativa ssp. japonica HOM05D003009 ORTHO05D001701 1.8e-16 90.1 137 35.8
MBI07_g30189_MAGBIO Magnolia biondii HOM05D002105 ORTHO05D001271 2.2e-14 83.2 146 32.9
Os01g0726100 Oryza sativa ssp. japonica HOM05D003009 ORTHO05D001701 4.8e-14 82.0 140 37.9
Zm00001eb154390 Zea mays HOM05D003009 ORTHO05D001701 1.8e-13 80.1 128 35.9
Cpa.g.sc27.37 Carica papaya HOM05D003009 ORTHO05D001701 5.4e-13 78.6 126 31.7
Manes.17G046500 Manihot esculenta HOM05D003009 ORTHO05D001701 1.6e-12 77.0 140 32.1
Zm00001eb293210 Zea mays HOM05D003009 ORTHO05D001701 3.5e-12 75.9 141 32.6
MELO3C007279.2 Cucumis melo HOM05D003009 ORTHO05D001701 1.0e-11 74.3 136 31.6
BcaC02g07775 Brassica carinata HOM05D003009 ORTHO05D001701 1.7e-11 73.6 141 34.0
C04p63290 Brassica napus HOM05D003009 ORTHO05D001701 1.7e-11 73.6 141 34.0
BolC4t27803H Brassica oleracea HOM05D003009 ORTHO05D001701 1.7e-11 73.6 141 34.0
Lsat_1_v5_gn_4_53840 Lactuca sativa HOM05D003009 ORTHO05D001701 1.7e-11 73.6 139 34.5
Sed0006317 Sechium edule HOM05D003009 ORTHO05D001701 1.7e-11 73.6 138 31.2
AUR62017024 Chenopodium quinoa HOM05D003009 ORTHO05D001701 2.2e-11 73.2 132 31.1
Gohir.D05G163801 Gossypium hirsutum HOM05D003009 ORTHO05D001701 2.2e-11 73.2 122 34.4
THA.LOC104812275 Tarenaya hassleriana HOM05D003009 ORTHO05D001701 2.2e-11 73.2 158 27.8
ATR0737G038 Amborella trichopoda HOM05D003009 ORTHO05D001701 2.9e-11 72.8 160 30.0
Aqoxy1G02393 Aquilegia oxysepala HOM05D003009 ORTHO05D001701 3.8e-11 72.4 125 32.8
Duzib160G0415 Durio zibethinus HOM05D003009 ORTHO05D001701 5.0e-11 72.0 134 31.3
Gorai.009G168900 Gossypium raimondii HOM05D003009 ORTHO05D001701 5.0e-11 72.0 122 33.6
ClCG01G023040 Citrullus lanatus HOM05D003009 ORTHO05D001701 6.5e-11 71.6 133 31.6
GSVIVG01007286001 Vitis vinifera HOM05D003009 ORTHO05D001701 6.5e-11 71.6 130 33.8
FAN11G0879 Fragaria x ananassa HOM05D003009 ORTHO05D001701 8.5e-11 71.2 140 30.7
A04p25990 Brassica napus HOM05D003009 ORTHO05D001701 1.1e-10 70.9 142 32.4
BraA04t18102Z Brassica rapa HOM05D003009 ORTHO05D001701 1.1e-10 70.9 142 32.4
FAN25G2997 Fragaria x ananassa HOM05D003009 ORTHO05D001701 1.1e-10 70.9 130 31.5
FvH4_3g09040 Fragaria vesca HOM05D003009 ORTHO05D001701 1.9e-10 70.1 130 30.8
FAN21G3284 Fragaria x ananassa HOM05D003009 ORTHO05D001701 1.9e-10 70.1 130 30.8
CsaV3_6G050170 Cucumis sativus L. HOM05D003009 ORTHO05D001701 3.2e-10 69.3 133 30.8
Manes.16G028850 Manihot esculenta HOM05D003009 ORTHO05D001701 3.2e-10 69.3 130 31.5
MD10G1293100 Malus domestica HOM05D003009 ORTHO05D001701 4.2e-10 68.9 129 33.3
Gohir.A05G161100 Gossypium hirsutum HOM05D003009 ORTHO05D001701 5.5e-10 68.6 122 32.8
HanXRQChr16g0516201 Helianthus annuus HOM05D003009 ORTHO05D001701 5.5e-10 68.6 150 32.7
Potri.011G053600 Populus trichocarpa HOM05D003009 ORTHO05D001701 5.5e-10 68.6 128 28.1
Hma1.2p1_0736F.1_g210750 Hydrangea macrophylla HOM05D003009 ORTHO05D001701 7.2e-10 68.2 131 31.3
Sabra04G0027800 Salix brachista HOM05D003009 ORTHO05D001701 7.2e-10 68.2 140 27.9
HPP92_006381 Vanilla planifolia HOM05D003009 ORTHO05D001701 7.2e-10 68.2 144 34.0
A05p10940 Brassica napus HOM05D003009 ORTHO05D001701 9.4e-10 67.8 159 27.7
BraA05t20040Z Brassica rapa HOM05D003009 ORTHO05D001701 9.4e-10 67.8 159 27.7
FAN16G3267 Fragaria x ananassa HOM05D003009 ORTHO05D001701 9.4e-10 67.8 130 29.2
CSS0013482 Camellia sinensis var. sinensis HOM05D003009 ORTHO05D001701 2.7e-09 66.2 123 29.3
CARHR027780 Cardamine hirsuta HOM05D003009 ORTHO05D001701 2.7e-09 66.2 127 31.5
CARHR127890 Cardamine hirsuta HOM05D003009 ORTHO05D001701 2.7e-09 66.2 139 33.8
Thhalv10017961m.g Eutrema salsugineum HOM05D003009 ORTHO05D001701 2.7e-09 66.2 161 26.7
Lj1A1203T34 Lonicera japonica HOM05D003009 ORTHO05D001701 2.7e-09 66.2 140 30.0
MD05G1338000 Malus domestica HOM05D003009 ORTHO05D001701 2.7e-09 66.2 129 32.6
AL1G41840 Arabidopsis lyrata HOM05D003009 ORTHO05D001701 3.6e-09 65.9 131 31.3
AT1G28290 Arabidopsis thaliana HOM05D003009 ORTHO05D001701 3.6e-09 65.9 131 30.5
CiPaw.09G060900 Carya illinoinensis HOM05D003009 ORTHO05D001701 3.6e-09 65.9 136 32.4
Prupe.4G048800 Prunus persica HOM05D003009 ORTHO05D001701 3.6e-09 65.9 144 29.9
QL05p041061 Quercus lobata HOM05D003009 ORTHO05D001701 3.6e-09 65.9 129 31.8
Sp4g16170 Schrenkiella parvula HOM05D003009 ORTHO05D001701 3.6e-09 65.9 139 30.2
Sc05g0007600 Simmondsia chinensis HOM05D003009 ORTHO05D001701 4.7e-09 65.5 133 31.6
Sc24g0001000 Simmondsia chinensis HOM05D003009 ORTHO05D001701 4.7e-09 65.5 129 31.0
AT2G34700 Arabidopsis thaliana HOM05D003009 ORTHO05D001701 6.1e-09 65.1 161 26.1
Duzib192G0967 Durio zibethinus HOM05D003009 ORTHO05D001701 8.0e-09 64.7 126 32.5
RcHm_v2.0_Chr5g0008631 Rosa chinensis HOM05D003009 ORTHO05D001701 8.0e-09 64.7 129 29.5
PGSC0003DMG400029700 Solanum tuberosum HOM05D003009 ORTHO05D001701 8.0e-09 64.7 95 38.9
BcaB02g09517 Brassica carinata HOM05D003009 ORTHO05D001701 1.0e-08 64.3 139 27.3
Cfa000485 Carpinus fangiana HOM05D003009 ORTHO05D001701 1.0e-08 64.3 130 31.5
Sp4g16980 Schrenkiella parvula HOM05D003009 ORTHO05D001701 1.0e-08 64.3 127 32.3
Oeu064785.1 Olea europaea HOM05D003009 ORTHO05D001701 1.4e-08 63.9 124 33.1
Aa31LG6G5170 Aethionema arabicum HOM05D003009 ORTHO05D001701 1.8e-08 63.5 124 29.0
Carub.0001s2673 Capsella rubella HOM05D003009 ORTHO05D001701 1.8e-08 63.5 131 31.3
Duzib235G1045 Durio zibethinus HOM05D003009 ORTHO05D001701 1.8e-08 63.5 126 31.0
Thecc.06G185700 Theobroma cacao HOM05D003009 ORTHO05D001701 1.8e-08 63.5 126 31.7
AT2G33790 Arabidopsis thaliana HOM05D003009 ORTHO05D001701 2.3e-08 63.2 135 30.4
ECA234G4352 Erigeron canadensis HOM05D003009 ORTHO05D001701 2.3e-08 63.2 78 38.5
Gohir.D06G132500 Gossypium hirsutum HOM05D003009 ORTHO05D001701 3.0e-08 62.8 126 31.7
HanXRQChr04g0124251 Helianthus annuus HOM05D003009 ORTHO05D001701 3.0e-08 62.8 83 37.3
BcaB02g09518 Brassica carinata HOM05D003009 ORTHO05D001701 4.0e-08 62.4 169 24.3
BcaC02g11549 Brassica carinata HOM05D003009 ORTHO05D001701 4.0e-08 62.4 127 29.9
Carub.0004s1545 Capsella rubella HOM05D003009 ORTHO05D001701 4.0e-08 62.4 131 29.8
Carub.0004s1639 Capsella rubella HOM05D003009 ORTHO05D001701 4.0e-08 62.4 127 29.9
ClCG03G008180 Citrullus lanatus HOM05D003009 ORTHO05D001701 4.0e-08 62.4 99 33.3
Dinv40571 Davidia involucrata HOM05D003009 ORTHO05D001701 4.0e-08 62.4 143 29.4
Gohir.A06G128400 Gossypium hirsutum HOM05D003009 ORTHO05D001701 4.0e-08 62.4 126 31.7
Gorai.010G154300 Gossypium raimondii HOM05D003009 ORTHO05D001701 4.0e-08 62.4 126 31.7
Potri.004G044700 Populus trichocarpa HOM05D003009 ORTHO05D001701 4.0e-08 62.4 128 28.9
CAN.G529.10 Capsicum annuum HOM05D003009 ORTHO05D001701 5.2e-08 62.0 85 40.0
A07p11350 Brassica napus HOM05D003009 ORTHO05D001701 6.8e-08 61.6 131 30.5
BraA07t28924Z Brassica rapa HOM05D003009 ORTHO05D001701 6.8e-08 61.6 131 30.5
Solyc02g078040.3 Solanum lycopersicum HOM05D003009 ORTHO05D001701 6.8e-08 61.6 85 38.8
Sopen02g022880 Solanum pennellii HOM05D003009 ORTHO05D001701 6.8e-08 61.6 85 38.8
Sopen02g022900 Solanum pennellii HOM05D003009 ORTHO05D001701 6.8e-08 61.6 138 33.3
Ah.14g089500 Amaranthus hybridus HOM05D003009 ORTHO05D038262 8.8e-08 61.2 124 33.1
C04p14040 Brassica napus HOM05D003009 ORTHO05D001701 8.8e-08 61.2 127 29.1
BolC4t22995H Brassica oleracea HOM05D003009 ORTHO05D001701 8.8e-08 61.2 127 29.1
BraA09t39290Z Brassica rapa HOM05D003009 ORTHO05D001701 8.8e-08 61.2 131 30.5
ECA236G1979 Erigeron canadensis HOM05D003009 ORTHO05D001701 8.8e-08 61.2 83 37.3
Lalb_Chr16g0383821 Lupinus albus HOM05D003009 ORTHO05D001701 8.8e-08 61.2 127 28.3
Medtr3g012020 Medicago truncatula HOM05D003009 ORTHO05D001701 8.8e-08 61.2 129 31.8
unitig_22.g6231 Utricularia gibba HOM05D003009 ORTHO05D001701 8.8e-08 61.2 143 28.7
BcaC06g35349 Brassica carinata HOM05D003009 ORTHO05D001701 1.2e-07 60.8 131 29.8
A09p37790 Brassica napus HOM05D003009 ORTHO05D001701 1.2e-07 60.8 131 30.5
C05p27140 Brassica napus HOM05D003009 ORTHO05D001701 1.2e-07 60.8 136 29.4
BolC7t42219H Brassica oleracea HOM05D003009 ORTHO05D001701 1.2e-07 60.8 131 29.8
CsaV3_1G012370 Cucumis sativus L. HOM05D003009 ORTHO05D001701 1.2e-07 60.8 110 31.8
Nitab4.5_0001652g0100 Nicotiana tabacum HOM05D003009 ORTHO05D001701 1.2e-07 60.8 85 37.6
BcaB03g13938 Brassica carinata HOM05D003009 ORTHO05D001701 1.5e-07 60.5 131 29.0
Dinv17322 Davidia involucrata HOM05D003009 ORTHO05D001701 1.5e-07 60.5 78 35.9
Thhalv10008255m.g Eutrema salsugineum HOM05D003009 ORTHO05D001701 1.5e-07 60.5 131 29.8
Medtr4g046780 Medicago truncatula HOM05D003009 ORTHO05D001701 2.0e-07 60.1 136 27.9
PSO832G2944 Papaver somniferum HOM05D003009 ORTHO05D001701 2.0e-07 60.1 78 30.8
MELO3C002610.2 Cucumis melo HOM05D003009 ORTHO05D001701 2.6e-07 59.7 99 33.3
MBI06_g23076_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 2.6e-07 59.7 80 35.0
Atru.chr12.80 Acer truncatum HOM05D005469 ORTHO05D001701 3.4e-07 59.3 171 26.9
BcaC05g26833 Brassica carinata HOM05D003009 ORTHO05D001701 3.4e-07 59.3 131 30.5
BolC5t31428H Brassica oleracea HOM05D003009 ORTHO05D001701 3.4e-07 59.3 131 30.5
PSO210G4623 Papaver somniferum HOM05D003009 ORTHO05D001701 3.4e-07 59.3 78 30.8
Sed0027600 Sechium edule HOM05D003009 ORTHO05D001701 3.4e-07 59.3 128 30.5
TAR627G0353 Trochodendron aralioides HOM05D003009 ORTHO05D001701 4.4e-07 58.9 89 29.2
Lj2A289T21 Lonicera japonica HOM05D003009 ORTHO05D001701 5.7e-07 58.5 78 35.9
THA.LOC104820687 Tarenaya hassleriana HOM05D003009 ORTHO05D001701 5.7e-07 58.5 131 27.5
C07p17130 Brassica napus HOM05D003009 ORTHO05D001701 9.8e-07 57.8 127 29.1
Lsat_1_v5_gn_7_21560 Lactuca sativa HOM05D003009 ORTHO05D001701 9.8e-07 57.8 83 36.1
PGR042G0148 Punica granatum HOM05D003009 ORTHO05D001701 9.8e-07 57.8 123 26.0
BcaB07g32438 Brassica carinata HOM05D003009 ORTHO05D001701 1.3e-06 57.4 127 29.1
Lj6g0021953 Lotus japonicus HOM05D003009 ORTHO05D001701 1.3e-06 57.4 132 28.0
Actinidia05644 Actinidia chinensis HOM05D003009 ORTHO05D001701 2.2e-06 56.6 78 34.6
Sp1g24490 Schrenkiella parvula HOM05D003009 ORTHO05D001701 2.8e-06 56.2 138 28.3
PGSC0003DMG400029698 Solanum tuberosum HOM05D003009 ORTHO05D001701 2.8e-06 56.2 107 35.5
THA.LOC104814217 Tarenaya hassleriana HOM05D003009 ORTHO05D001701 3.7e-06 55.8 131 26.7
HanXRQChr07g0203111 Helianthus annuus HOM05D005469 ORTHO05D001701 4.9e-06 55.5 158 27.2
PGR004G0870 Punica granatum HOM05D003009 ORTHO05D001701 4.9e-06 55.5 83 32.5
QL05p041024 Quercus lobata HOM05D003009 ORTHO05D001701 4.9e-06 55.5 78 32.1
CANSAT35G1820 Cannabis sativa HOM05D003009 ORTHO05D001701 6.3e-06 55.1 129 30.2
Psat7g114200 Pisum sativum HOM05D003009 ORTHO05D001701 6.3e-06 55.1 130 30.8


User provided reference genes

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