Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0691300 Oryza sativa ssp. japonica HOM05D000889 ORTHO05D000693 2.2e-52 208.8 113 100.0
Zm00001eb360660 Zea mays HOM05D000889 ORTHO05D000693 6.2e-18 94.4 101 52.5
Os05g0550600 Oryza sativa ssp. japonica HOM05D000889 ORTHO05D000693 5.4e-14 81.3 90 46.7
Zm00001eb294870 Zea mays HOM05D000889 ORTHO05D000693 2.5e-11 72.4 99 42.4
Os05g0550300 Oryza sativa ssp. japonica HOM05D000889 ORTHO05D000693 7.3e-11 70.9 102 42.2
Zm00001eb283440 Zea mays HOM05D000889 ORTHO05D000693 2.8e-10 68.9 104 43.3
Potri.004G096000 Populus trichocarpa HOM05D000889 ORTHO05D000693 4.7e-10 68.2 80 47.5
HPP92_011575 Vanilla planifolia HOM05D000889 ORTHO05D000693 4.7e-10 68.2 94 43.6
BcaB05g24199 Brassica carinata HOM05D000889 ORTHO05D000693 6.2e-10 67.8 100 43.0
BcaB04g20779 Brassica carinata HOM05D000889 ORTHO05D000693 1.8e-09 66.2 99 42.4
Solyc05g008895.1 Solanum lycopersicum HOM05D000889 ORTHO05D000693 1.8e-09 66.2 71 47.9
BcaC03g14767 Brassica carinata HOM05D000889 ORTHO05D000693 4.0e-09 65.1 100 40.0
TWI77G0259 Tripterygium wilfordii HOM05D000889 ORTHO05D000693 4.0e-09 65.1 81 44.4
A02p13760 Brassica napus HOM05D000889 ORTHO05D000693 5.2e-09 64.7 100 40.0
BraA02t06433Z Brassica rapa HOM05D000889 ORTHO05D000693 5.2e-09 64.7 100 40.0
Potri.017G118700 Populus trichocarpa HOM05D000889 ORTHO05D000693 5.2e-09 64.7 90 42.2
Aa31LG8G5130 Aethionema arabicum HOM05D000889 ORTHO05D000693 6.8e-09 64.3 99 42.4
BraA07t30993Z Brassica rapa HOM05D000889 ORTHO05D000693 6.8e-09 64.3 97 40.2
MBI16_g44834_MAGBIO Magnolia biondii HOM05D000889 ORTHO05D000693 6.8e-09 64.3 99 40.4
Rhsim10G0071300 Rhododendron simsii HOM05D000889 ORTHO05D000693 6.8e-09 64.3 96 42.7
A07p33650 Brassica napus HOM05D000889 ORTHO05D000693 8.9e-09 63.9 97 39.2
Rhsim10G0071200 Rhododendron simsii HOM05D000889 ORTHO05D000693 8.9e-09 63.9 96 42.7
Zm00001eb294880 Zea mays HOM05D000889 ORTHO05D000693 8.9e-09 63.9 55 49.1
BcaC08g46128 Brassica carinata HOM05D000889 ORTHO05D000693 1.2e-08 63.5 97 38.1
C02p22130 Brassica napus HOM05D000889 ORTHO05D000693 1.2e-08 63.5 100 39.0
BolC2t08349H Brassica oleracea HOM05D000889 ORTHO05D000693 1.2e-08 63.5 100 39.0
Sopen03g007130 Solanum pennellii HOM05D000889 ORTHO05D000693 1.2e-08 63.5 73 42.5
Sopen05g004650 Solanum pennellii HOM05D000889 ORTHO05D000693 1.2e-08 63.5 99 39.4
AT3G18280 Arabidopsis thaliana HOM05D000889 ORTHO05D000693 2.0e-08 62.8 105 38.1
BolC6t39107H Brassica oleracea HOM05D000889 ORTHO05D000693 2.0e-08 62.8 97 38.1
CARHR093640 Cardamine hirsuta HOM05D000889 ORTHO05D000693 2.0e-08 62.8 105 40.0
Lalb_Chr14g0370991 Lupinus albus HOM05D000889 ORTHO05D000693 2.0e-08 62.8 80 41.2
Lalb_Chr22g0353181 Lupinus albus HOM05D000889 ORTHO05D000693 2.0e-08 62.8 81 40.7
Nitab4.5_0000965g0060 Nicotiana tabacum HOM05D000889 ORTHO05D000693 2.0e-08 62.8 77 44.2
BcaC09g48785 Brassica carinata HOM05D000889 ORTHO05D000693 2.6e-08 62.4 92 41.3
A01p36060 Brassica napus HOM05D000889 ORTHO05D000693 2.6e-08 62.4 99 40.4
A01p36200 Brassica napus HOM05D000889 ORTHO05D000693 2.6e-08 62.4 99 40.4
BraA01t03684Z Brassica rapa HOM05D000889 ORTHO05D000693 2.6e-08 62.4 99 40.4
BraA01t03695Z Brassica rapa HOM05D000889 ORTHO05D000693 2.6e-08 62.4 99 40.4
BraA05t21976Z Brassica rapa HOM05D000889 ORTHO05D000693 2.6e-08 62.4 105 40.0
Thhalv10021828m.g Eutrema salsugineum HOM05D000889 ORTHO05D000693 2.6e-08 62.4 100 40.0
Gohir.A07G174300 Gossypium hirsutum HOM05D000889 ORTHO05D000693 2.6e-08 62.4 81 39.5
MBI16_g42426_MAGBIO Magnolia biondii HOM05D000889 ORTHO05D000693 2.6e-08 62.4 74 41.9
Nitab4.5_0004136g0010 Nicotiana tabacum HOM05D000889 ORTHO05D000693 2.6e-08 62.4 75 44.0
Nitab4.5_0004279g0030 Nicotiana tabacum HOM05D000889 ORTHO05D000693 2.6e-08 62.4 77 44.2
CAN.G610.26 Capsicum annuum HOM05D000889 ORTHO05D000693 3.4e-08 62.0 99 38.4
Cc07_g08560 Coffea canephora HOM05D000889 ORTHO05D000693 3.4e-08 62.0 93 41.9
Cc11_g09700 Coffea canephora HOM05D000889 ORTHO05D000693 3.4e-08 62.0 75 40.0
Sopen03g007110 Solanum pennellii HOM05D000889 ORTHO05D000693 3.4e-08 62.0 75 42.7
HanXRQChr17g0559421 Helianthus annuus HOM05D000889 ORTHO05D000693 4.4e-08 61.6 101 39.6
SalBow8G1049 Salvia bowleyana HOM05D000889 ORTHO05D000693 4.4e-08 61.6 105 38.1
Sp3g16400 Schrenkiella parvula HOM05D000889 ORTHO05D000693 4.4e-08 61.6 105 41.0
Carub.0003s1805 Capsella rubella HOM05D000889 ORTHO05D000693 5.8e-08 61.2 105 41.0
SalBow8G2447 Salvia bowleyana HOM05D000889 ORTHO05D000693 5.8e-08 61.2 82 36.6
PGSC0003DMG400030587 Solanum tuberosum HOM05D000889 ORTHO05D000693 5.8e-08 61.2 99 39.4
DCAR_030813 Daucus carota HOM05D000889 ORTHO05D000693 7.5e-08 60.8 73 43.8
THA.LOC104805584 Tarenaya hassleriana HOM05D000889 ORTHO05D000693 7.5e-08 60.8 93 39.8
AL2G25060 Arabidopsis lyrata HOM05D000889 ORTHO05D000693 9.9e-08 60.5 71 43.7
BolC5t33476H Brassica oleracea HOM05D000889 ORTHO05D000693 9.9e-08 60.5 99 38.4
COL.COLO4_20837 Corchorus olitorius HOM05D000889 ORTHO05D000693 9.9e-08 60.5 102 37.3
Nitab4.5_0003908g0010 Nicotiana tabacum HOM05D000889 ORTHO05D000693 9.9e-08 60.5 80 43.8
QL01p010843 Quercus lobata HOM05D000889 ORTHO05D000693 9.9e-08 60.5 76 40.8
Rhsim10G0072300 Rhododendron simsii HOM05D000889 ORTHO05D000693 9.9e-08 60.5 92 39.1
Sabra04G0065200 Salix brachista HOM05D000889 ORTHO05D000693 9.9e-08 60.5 80 42.5
THA.LOC104805972 Tarenaya hassleriana HOM05D000889 ORTHO05D000693 9.9e-08 60.5 93 39.8
Thecc.02G222600 Theobroma cacao HOM05D000889 ORTHO05D000693 9.9e-08 60.5 97 40.2
MSTRG.3543 Avicennia marina HOM05D000889 ORTHO05D000693 1.3e-07 60.1 88 39.8
BcaC01g03703 Brassica carinata HOM05D000889 ORTHO05D000693 1.3e-07 60.1 97 38.1
CSS0014050 Camellia sinensis var. sinensis HOM05D000889 ORTHO05D000693 1.3e-07 60.1 78 42.3
BolC3t17237H Brassica oleracea HOM05D000889 ORTHO05D000693 1.7e-07 59.7 99 36.4
Migut.L00497 Erythranthe guttata HOM05D000889 ORTHO05D000693 1.7e-07 59.7 105 38.1
MD14G1229500 Malus domestica HOM05D000889 ORTHO05D000693 1.7e-07 59.7 99 38.4
Rhsim10G0072100 Rhododendron simsii HOM05D000889 ORTHO05D000693 1.7e-07 59.7 95 38.9
Rhsim10G0072200 Rhododendron simsii HOM05D000889 ORTHO05D000693 1.7e-07 59.7 95 38.9
Gohir.A12G054800 Gossypium hirsutum HOM05D000889 ORTHO05D000693 2.2e-07 59.3 102 38.2
MD13G1035400 Malus domestica HOM05D000889 ORTHO05D000693 2.2e-07 59.3 71 42.3
Nitab4.5_0001194g0100 Nicotiana tabacum HOM05D000889 ORTHO05D000693 2.2e-07 59.3 80 42.5
THA.LOC104809836 Tarenaya hassleriana HOM05D000889 ORTHO05D000693 2.2e-07 59.3 99 38.4
A03p40600 Brassica napus HOM05D000889 ORTHO05D000693 2.9e-07 58.9 99 36.4
BraA03t13217Z Brassica rapa HOM05D000889 ORTHO05D000693 2.9e-07 58.9 99 36.4
Carub.0001s0712 Capsella rubella HOM05D000889 ORTHO05D000693 2.9e-07 58.9 80 43.8
PGR042G2741 Punica granatum HOM05D000889 ORTHO05D000693 2.9e-07 58.9 79 44.3
RhsimUnG0245900 Rhododendron simsii HOM05D000889 ORTHO05D000693 2.9e-07 58.9 105 39.0
Solyc03g119210.1 Solanum lycopersicum HOM05D000889 ORTHO05D000693 2.9e-07 58.9 95 38.9
Sopen03g038090 Solanum pennellii HOM05D000889 ORTHO05D000693 2.9e-07 58.9 95 38.9
BolC1t04555H Brassica oleracea HOM05D035481 ORTHO05D031851 3.7e-07 58.5 89 40.4
CiPaw.16G088700 Carya illinoinensis HOM05D000889 ORTHO05D000693 3.7e-07 58.5 101 38.6
ECA232G1876 Erigeron canadensis HOM05D000889 ORTHO05D000693 3.7e-07 58.5 79 43.0
Hma1.2p1_0348F.1_g131930 Hydrangea macrophylla HOM05D000889 ORTHO05D000693 3.7e-07 58.5 78 39.7
Rhsim12G0142300 Rhododendron simsii HOM05D000889 ORTHO05D000693 3.7e-07 58.5 77 40.3
RhsimUnG0076000 Rhododendron simsii HOM05D000889 ORTHO05D000693 3.7e-07 58.5 77 40.3
Solyc03g034390.1 Solanum lycopersicum HOM05D000889 ORTHO05D000693 3.7e-07 58.5 71 43.7
Gorai.008G057100 Gossypium raimondii HOM05D000889 ORTHO05D000693 4.9e-07 58.2 102 36.3
HanXRQChr14g0450831 Helianthus annuus HOM05D000889 ORTHO05D000693 4.9e-07 58.2 105 37.1
MSTRG.13552 Avicennia marina HOM05D000889 ORTHO05D000693 6.4e-07 57.8 100 35.0
Migut.L01032 Erythranthe guttata HOM05D000889 ORTHO05D000693 6.4e-07 57.8 76 40.8
Gohir.D12G054200 Gossypium hirsutum HOM05D000889 ORTHO05D000693 6.4e-07 57.8 102 36.3
Manes.14G106600 Manihot esculenta HOM05D000889 ORTHO05D000693 6.4e-07 57.8 105 35.2
Rhsim12G0142000 Rhododendron simsii HOM05D000889 ORTHO05D000693 6.4e-07 57.8 81 39.5
RhsimUnG0075700 Rhododendron simsii HOM05D000889 ORTHO05D000693 6.4e-07 57.8 81 39.5
Cc07_g08550 Coffea canephora HOM05D000889 ORTHO05D000693 8.3e-07 57.4 98 37.8
Glyma.07G096700 Glycine max HOM05D000889 ORTHO05D000693 8.3e-07 57.4 77 41.6
Prupe.1G316400 Prunus persica HOM05D000889 ORTHO05D000693 8.3e-07 57.4 70 38.6
Rhsim08G0083600 Rhododendron simsii HOM05D000889 ORTHO05D000693 8.3e-07 57.4 105 39.0
Sopen03g007210 Solanum pennellii HOM05D000889 ORTHO05D000693 8.3e-07 57.4 71 43.7
AT1G66850 Arabidopsis thaliana HOM05D000889 ORTHO05D000693 1.1e-06 57.0 104 37.5
Duzib251G0259 Durio zibethinus HOM05D000889 ORTHO05D000693 1.1e-06 57.0 97 38.1
Migut.L01027 Erythranthe guttata HOM05D000889 ORTHO05D000693 1.1e-06 57.0 113 34.5
Glyma.10G121000 Glycine max HOM05D000889 ORTHO05D000693 1.1e-06 57.0 71 38.0
Os01g0691100 Oryza sativa ssp. japonica HOM05D000889 ORTHO05D000693 1.1e-06 57.0 113 32.7
Rhsim10G0070900 Rhododendron simsii HOM05D000889 ORTHO05D000693 1.1e-06 57.0 113 36.3
THA.LOC104805585 Tarenaya hassleriana HOM05D000889 ORTHO05D000693 1.1e-06 57.0 95 38.9
TWI81G0906 Tripterygium wilfordii HOM05D000889 ORTHO05D000693 1.4e-06 56.6 99 36.4
Ah.10g037640 Amaranthus hybridus HOM05D000889 ORTHO05D000693 1.9e-06 56.2 96 37.5
Duzib133G1374 Durio zibethinus HOM05D000889 ORTHO05D000693 1.9e-06 56.2 102 35.3
MD06G1219800 Malus domestica HOM05D000889 ORTHO05D000693 1.9e-06 56.2 99 38.4
SGA_v2.0_scaffold38G14999 Striga asiatica HOM05D000889 ORTHO05D000693 1.9e-06 56.2 103 36.9
Lj5g0000083 Lotus japonicus HOM05D000889 ORTHO05D000693 2.4e-06 55.8 103 35.9
Nn4g23947 Nelumbo nucifera HOM05D000889 ORTHO05D000693 2.4e-06 55.8 78 38.5
Phvul.008G008200 Phaseolus vulgaris HOM05D000889 ORTHO05D000693 2.4e-06 55.8 99 38.4
Hma1.2p1_1283F.1_g272750 Hydrangea macrophylla HOM05D000889 ORTHO05D000693 3.2e-06 55.5 99 36.4
Lsat_1_v5_gn_8_142920 Lactuca sativa HOM05D000889 ORTHO05D000693 3.2e-06 55.5 110 32.7
Peaxi162Scf00877g00009 Petunia axillaris HOM05D000889 ORTHO05D000693 3.2e-06 55.5 82 39.0
Sabra15G0040600 Salix brachista HOM05D000889 ORTHO05D000693 3.2e-06 55.5 71 39.4
CSS0029888 Camellia sinensis var. sinensis HOM05D000889 ORTHO05D000693 4.1e-06 55.1 97 36.1
Carub.0002s1305 Capsella rubella HOM05D000889 ORTHO05D000693 4.1e-06 55.1 103 35.0
Carub.0005s1255 Capsella rubella HOM05D000889 ORTHO05D000693 4.1e-06 55.1 71 40.8
Hma1.2p1_0653F.1_g196040 Hydrangea macrophylla HOM05D000889 ORTHO05D000693 4.1e-06 55.1 98 35.7
MD16G1037400 Malus domestica HOM05D000889 ORTHO05D000693 4.1e-06 55.1 99 34.3
TWI15G1023 Tripterygium wilfordii HOM05D000889 ORTHO05D000693 4.1e-06 55.1 99 34.3
Medtr7g007440 Medicago truncatula HOM05D000889 ORTHO05D000693 7.1e-06 54.3 75 37.3
Peaxi162Scf00104g01410 Petunia axillaris HOM05D000889 ORTHO05D000693 7.1e-06 54.3 93 33.3
Prupe.3G147900 Prunus persica HOM05D000889 ORTHO05D000693 7.1e-06 54.3 90 34.4
Sabra12G0038100 Salix brachista HOM05D000889 ORTHO05D000693 7.1e-06 54.3 71 38.0
Ah.10g033590 Amaranthus hybridus HOM05D000889 ORTHO05D000693 9.2e-06 53.9 110 32.7
Migut.E00367 Erythranthe guttata HOM05D000889 ORTHO05D000693 9.2e-06 53.9 103 34.0
HanXRQChr17g0560701 Helianthus annuus HOM05D000889 ORTHO05D000693 9.2e-06 53.9 97 38.1


User provided reference genes

Program Settings