Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0686400 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 1.8e-40 168.7 81 100.0
Zm00001eb156450 Zea mays HOM05D004236 ORTHO05D004903 1.8e-32 142.1 81 81.5
Ah.16g101430 Amaranthus hybridus HOM05D004236 ORTHO05D004903 2.3e-19 98.6 85 55.3
HanXRQChr09g0262441 Helianthus annuus HOM05D004236 ORTHO05D004903 2.3e-19 98.6 84 59.5
ECA232G1241 Erigeron canadensis HOM05D004236 ORTHO05D004903 6.8e-19 97.1 82 57.3
Lsat_1_v5_gn_4_156001 Lactuca sativa HOM05D004236 ORTHO05D004903 6.8e-19 97.1 79 58.2
Cc07_g08360 Coffea canephora HOM05D004236 ORTHO05D004903 1.5e-18 95.9 84 57.1
Lsat_1_v5_gn_2_81141 Lactuca sativa HOM05D004236 ORTHO05D004903 2.0e-18 95.5 77 57.1
Nn3g18026 Nelumbo nucifera HOM05D004236 ORTHO05D004903 2.6e-18 95.1 79 58.2
SalBow3G2011 Salvia bowleyana HOM05D004236 ORTHO05D004903 2.6e-18 95.1 82 56.1
SalBow3G4331 Salvia bowleyana HOM05D004236 ORTHO05D004903 2.6e-18 95.1 82 56.1
CSS0010670 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 3.4e-18 94.7 84 57.1
CSS0025273 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 3.4e-18 94.7 84 57.1
Manes.01G114300 Manihot esculenta HOM05D004236 ORTHO05D004903 4.4e-18 94.4 82 56.1
TAR622G0693 Trochodendron aralioides HOM05D004236 ORTHO05D004903 4.4e-18 94.4 83 57.8
Medtr7g082910 Medicago truncatula HOM05D004236 ORTHO05D004903 5.8e-18 94.0 83 59.0
CSS0029696 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 7.5e-18 93.6 85 54.1
Lj2A437T35 Lonicera japonica HOM05D004236 ORTHO05D004903 7.5e-18 93.6 79 58.2
Lalb_Chr04g0257721 Lupinus albus HOM05D004236 ORTHO05D004903 7.5e-18 93.6 84 57.1
vmacro05491 Vaccinium macrocarpon HOM05D004236 ORTHO05D004903 7.5e-18 93.6 83 56.6
AUR62023213 Chenopodium quinoa HOM05D004236 ORTHO05D004903 9.8e-18 93.2 80 56.2
AUR62023259 Chenopodium quinoa HOM05D004236 ORTHO05D004903 9.8e-18 93.2 80 56.2
Carub.0002s1288 Capsella rubella HOM05D004236 ORTHO05D004903 1.7e-17 92.4 94 54.3
Gohir.A11G167000 Gossypium hirsutum HOM05D004236 ORTHO05D004903 1.7e-17 92.4 90 55.6
Gorai.007G185600 Gossypium raimondii HOM05D004236 ORTHO05D004903 1.7e-17 92.4 90 55.6
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 1.7e-17 92.4 85 54.1
MD09G1258900 Malus domestica HOM05D004236 ORTHO05D004903 1.7e-17 92.4 79 59.5
FAN23G2326 Fragaria x ananassa HOM05D004236 ORTHO05D004903 2.2e-17 92.0 79 57.0
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 2.2e-17 92.0 80 53.8
FvH4_1g29040 Fragaria vesca HOM05D004236 ORTHO05D004903 2.9e-17 91.7 79 57.0
FAN19G1079 Fragaria x ananassa HOM05D004236 ORTHO05D004903 2.9e-17 91.7 79 57.0
Glyma.18G292800 Glycine max HOM05D004236 ORTHO05D004903 2.9e-17 91.7 83 59.0
Nn4g24056 Nelumbo nucifera HOM05D004236 ORTHO05D004903 2.9e-17 91.7 85 55.3
PSO017G0657 Papaver somniferum HOM05D004236 ORTHO05D004903 2.9e-17 91.7 79 58.2
arahy.Tifrunner.gnm1.ann1.LVD2NH Arachis hypogaea HOM05D004236 ORTHO05D004903 3.7e-17 91.3 83 54.2
arahy.Tifrunner.gnm1.ann1.UY7CFX Arachis hypogaea HOM05D004236 ORTHO05D004903 3.7e-17 91.3 83 55.4
CARHR058730 Cardamine hirsuta HOM05D004236 ORTHO05D004903 3.7e-17 91.3 91 56.0
Ciclev10012115m.g Citrus clementina HOM05D004236 ORTHO05D004903 3.7e-17 91.3 82 57.3
Psat3g096800 Pisum sativum HOM05D004236 ORTHO05D004903 3.7e-17 91.3 83 56.6
Prupe.3G150900 Prunus persica HOM05D004236 ORTHO05D004903 3.7e-17 91.3 79 57.0
TWI53G1957 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 3.7e-17 91.3 83 57.8
Aa31LG2G3180 Aethionema arabicum HOM05D004236 ORTHO05D004903 4.9e-17 90.9 89 53.9
C06p39930 Brassica napus HOM05D004236 ORTHO05D004903 4.9e-17 90.9 82 56.1
BraA07t30978Z Brassica rapa HOM05D004236 ORTHO05D004903 4.9e-17 90.9 82 56.1
Ca_08100_v3 Cicer arietinum L. HOM05D004236 ORTHO05D004903 4.9e-17 90.9 79 58.2
COL.COLO4_27143 Corchorus olitorius HOM05D004236 ORTHO05D004903 4.9e-17 90.9 84 54.8
Migut.H00256 Erythranthe guttata HOM05D004236 ORTHO05D004903 4.9e-17 90.9 84 52.4
Gohir.D11G173300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 4.9e-17 90.9 90 54.4
TAR629G1587 Trochodendron aralioides HOM05D004236 ORTHO05D004903 4.9e-17 90.9 86 52.3
AL2G24640 Arabidopsis lyrata HOM05D004236 ORTHO05D004903 6.4e-17 90.5 95 53.7
A07p33520 Brassica napus HOM05D004236 ORTHO05D004903 6.4e-17 90.5 82 56.1
Lj4A180T59 Lonicera japonica HOM05D004236 ORTHO05D004903 6.4e-17 90.5 79 54.4
Lj1g0012263 Lotus japonicus HOM05D004236 ORTHO05D004903 6.4e-17 90.5 79 55.7
PSO478G1960 Papaver somniferum HOM05D004236 ORTHO05D004903 6.4e-17 90.5 79 57.0
RcHm_v2.0_Chr3g0493661 Rosa chinensis HOM05D004236 ORTHO05D004903 6.4e-17 90.5 79 55.7
Sed0025807 Sechium edule HOM05D004236 ORTHO05D004903 6.4e-17 90.5 83 55.4
TPR.G28393 Trifolium pratense HOM05D004236 ORTHO05D004903 6.4e-17 90.5 83 56.6
Phvul.008G009300 Phaseolus vulgaris HOM05D004236 ORTHO05D004903 8.3e-17 90.1 81 58.0
VMungo1383G0222 Vigna mungo HOM05D004236 ORTHO05D004903 8.3e-17 90.1 83 56.6
HPP92_023113 Vanilla planifolia HOM05D004236 ORTHO05D004903 1.1e-16 89.7 79 58.2
ATR0326G065 Amborella trichopoda HOM05D004236 ORTHO05D004903 1.4e-16 89.4 79 57.0
Aqoxy3G00154 Aquilegia oxysepala HOM05D004236 ORTHO05D004903 1.4e-16 89.4 84 53.6
Cpa.g.sc116.5 Carica papaya HOM05D004236 ORTHO05D004903 1.4e-16 89.4 82 54.9
FAN26G2772 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.4e-16 89.4 79 55.7
Lalb_Chr17g0336021 Lupinus albus HOM05D004236 ORTHO05D004903 1.4e-16 89.4 83 54.2
PGSC0003DMG400016698 Solanum tuberosum HOM05D004236 ORTHO05D004903 1.4e-16 89.4 79 54.4
Thecc.04G125200 Theobroma cacao HOM05D004236 ORTHO05D004903 1.4e-16 89.4 85 54.1
Gohir.A07G075300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 1.9e-16 89.0 86 53.5
Lsat_1_v5_gn_4_15520 Lactuca sativa HOM05D004236 ORTHO05D004903 1.9e-16 89.0 77 55.8
Potri.015G062400 Populus trichocarpa HOM05D004236 ORTHO05D004903 1.9e-16 89.0 83 55.4
PGR042G2451 Punica granatum HOM05D004236 ORTHO05D004903 1.9e-16 89.0 83 53.0
ClCG05G010730 Citrullus lanatus HOM05D004236 ORTHO05D004903 2.4e-16 88.6 82 53.7
Duzib133G1178 Durio zibethinus HOM05D004236 ORTHO05D004903 2.4e-16 88.6 90 52.2
Gorai.001G084600 Gossypium raimondii HOM05D004236 ORTHO05D004903 2.4e-16 88.6 85 51.8
Solyc02g091190.4 Solanum lycopersicum HOM05D004236 ORTHO05D004903 2.4e-16 88.6 80 55.0
Sopen02g035820 Solanum pennellii HOM05D004236 ORTHO05D004903 2.4e-16 88.6 80 55.0
AT1G66680 Arabidopsis thaliana HOM05D004236 ORTHO05D004903 3.2e-16 88.2 95 52.6
BcaC08g46105 Brassica carinata HOM05D004236 ORTHO05D004903 3.2e-16 88.2 85 52.9
BolC6t39081H Brassica oleracea HOM05D004236 ORTHO05D004903 3.2e-16 88.2 85 52.9
Gohir.D07G079800 Gossypium hirsutum HOM05D004236 ORTHO05D004903 3.2e-16 88.2 86 52.3
SGA_v2.0_scaffold202G41491 Striga asiatica HOM05D004236 ORTHO05D004903 3.2e-16 88.2 79 55.7
EL10Ac2g04514 Beta vulgaris HOM05D004236 ORTHO05D004903 4.1e-16 87.8 87 51.7
Hma1.2p1_0500F.1_g166960 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 4.1e-16 87.8 83 51.8
Rhsim10G0077900 Rhododendron simsii HOM05D004236 ORTHO05D004903 4.1e-16 87.8 83 55.4
Sed0018742 Sechium edule HOM05D004236 ORTHO05D004903 4.1e-16 87.8 82 54.9
Atru.chr1.1563 Acer truncatum HOM05D004236 ORTHO05D004903 7.0e-16 87.0 87 54.0
THA.LOC104822473 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 7.0e-16 87.0 79 57.0
CAN.G11.35 Capsicum annuum HOM05D004236 ORTHO05D004903 9.2e-16 86.7 79 53.2
DCAR_021451 Daucus carota HOM05D004236 ORTHO05D004903 9.2e-16 86.7 85 47.1
Glyma.02G090500 Glycine max HOM05D004236 ORTHO05D004903 9.2e-16 86.7 84 56.0
CiPaw.04G044800 Carya illinoinensis HOM05D004236 ORTHO05D004903 1.2e-15 86.3 84 54.8
CsaV3_3G017790 Cucumis sativus L. HOM05D004236 ORTHO05D004903 1.2e-15 86.3 84 54.8
Thhalv10018777m.g Eutrema salsugineum HOM05D004236 ORTHO05D004903 1.2e-15 86.3 91 51.6
Peaxi162Scf00104g01815 Petunia axillaris HOM05D004236 ORTHO05D004903 1.2e-15 86.3 84 51.2
PGSC0003DMG400030596 Solanum tuberosum HOM05D004236 ORTHO05D004903 1.2e-15 86.3 83 51.8
Eucgr.J01534 Eucalyptus grandis HOM05D004236 ORTHO05D004903 1.6e-15 85.9 83 55.4
THA.LOC104805594 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 1.6e-15 85.9 87 51.7
CANSAT80G2204 Cannabis sativa HOM05D004236 ORTHO05D004903 2.0e-15 85.5 85 51.8
Peaxi162Scf00803g00219 Petunia axillaris HOM05D004236 ORTHO05D004903 2.0e-15 85.5 83 51.8
DCAR_010720 Daucus carota HOM05D004236 ORTHO05D004903 2.7e-15 85.1 84 47.6
SEGI_21262 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 2.7e-15 85.1 89 47.2
GSVIVG01030921001 Vitis vinifera HOM05D004236 ORTHO05D004903 2.7e-15 85.1 84 51.2
CAN.G625.68 Capsicum annuum HOM05D004236 ORTHO05D004903 3.5e-15 84.7 84 50.0
Mapoly0105s0009 Marchantia polymorpha HOM05D004236 ORTHO05D004903 4.6e-15 84.3 91 49.5
Oeu047429.3 Olea europaea HOM05D004236 ORTHO05D004903 4.6e-15 84.3 79 54.4
Sp5g21620 Schrenkiella parvula HOM05D004236 ORTHO05D004903 4.6e-15 84.3 93 49.5
BcaB03g15254 Brassica carinata HOM05D004236 ORTHO05D004903 6.0e-15 84.0 85 52.9
Pp3c15_25630 Physcomitrium patens HOM05D004236 ORTHO05D004903 6.0e-15 84.0 85 50.6
Hund13695 Selenicereus undatus HOM05D004236 ORTHO05D004903 6.0e-15 84.0 82 50.0
Duzib138G1869 Durio zibethinus HOM05D004236 ORTHO05D004903 7.8e-15 83.6 82 51.2
Oeu038787.1 Olea europaea HOM05D004236 ORTHO05D004903 7.8e-15 83.6 83 49.4
Rhsim08G0084400 Rhododendron simsii HOM05D004236 ORTHO05D004903 7.8e-15 83.6 84 51.2
Sabra15G0087400 Salix brachista HOM05D004236 ORTHO05D004903 7.8e-15 83.6 84 52.4
Nitab4.5_0005700g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 1.3e-14 82.8 84 51.2
CiPaw.03G066200 Carya illinoinensis HOM05D004236 ORTHO05D004903 3.0e-14 81.6 84 48.8
Dinv23330 Davidia involucrata HOM05D004236 ORTHO05D004903 3.0e-14 81.6 79 51.9
MD17G1253400 Malus domestica HOM05D004236 ORTHO05D004903 3.9e-14 81.3 79 53.2
Nitab4.5_0000901g0060 Nicotiana tabacum HOM05D004236 ORTHO05D004903 4.3e-13 77.8 80 48.8
MELO3C020314.2 Cucumis melo HOM05D004236 ORTHO05D004903 1.6e-12 75.9 74 54.1
TWI77G0072 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 2.1e-12 75.5 83 50.6
ECA238G4753 Erigeron canadensis HOM05D004236 ORTHO05D004903 2.8e-12 75.1 77 49.4
Os01g0121100 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 4.7e-12 74.3 77 48.1
SMO340G0155 Selaginella moellendorffii HOM05D004236 ORTHO05D004903 2.0e-10 68.9 91 46.2
MBI10_g41074_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 7.5e-10 67.0 85 44.7
GSVIVG01011790001 Vitis vinifera HOM05D004236 ORTHO05D004903 5.4e-08 60.8 83 44.6
CBR_g26148 Chara braunii HOM05D004236 ORTHO05D004903 9.2e-08 60.1 144 30.6
SHI07804 Sapria himalayana HOM05D004236 ORTHO05D004903 3.5e-07 58.2 69 44.9
CDE04G0933 Ceratophyllum demersum HOM05D004236 ORTHO05D004903 6.0e-07 57.4 55 52.7
Nitab4.5_0000625g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 5.1e-06 54.3 33 69.7


User provided reference genes

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