Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0683550 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 5.7e-152 540.8 258 100.0
Os05g0554400 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 2.3e-60 236.5 187 63.6
Zm00001eb343120 Zea mays HOM05D003702 ORTHO05D004653 1.9e-59 233.4 184 62.5
Zm00001eb295120 Zea mays HOM05D003702 ORTHO05D004653 9.6e-59 231.1 223 54.7
SGA_v2.0_scaffold14G06919 Striga asiatica HOM05D003702 ORTHO05D004653 4.8e-58 228.8 209 54.1
CSS0038999 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 6.5e-55 218.4 184 58.7
Haze_00678 Corylus avellana HOM05D003702 ORTHO05D004653 6.5e-55 218.4 184 57.6
GSVIVG01011808001 Vitis vinifera HOM05D003702 ORTHO05D004653 6.5e-55 218.4 212 52.8
Oeu048389.1 Olea europaea HOM05D003702 ORTHO05D004653 8.4e-55 218.0 184 58.7
Dinv04909 Davidia involucrata HOM05D003702 ORTHO05D004653 1.4e-54 217.2 197 55.3
Dinv16161 Davidia involucrata HOM05D003702 ORTHO05D004653 1.4e-54 217.2 184 58.2
Sc04g0005900 Simmondsia chinensis HOM05D003702 ORTHO05D004653 1.4e-54 217.2 184 57.1
VMungo0720G1815 Vigna mungo HOM05D003702 ORTHO05D004653 1.9e-54 216.9 241 47.7
ATR0691G123 Amborella trichopoda HOM05D003702 ORTHO05D004653 2.5e-54 216.5 210 51.9
Migut.E00388 Erythranthe guttata HOM05D003702 ORTHO05D004653 3.2e-54 216.1 184 57.1
Gohir.A12G141400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 3.2e-54 216.1 184 56.5
Gohir.D12G146300 Gossypium hirsutum HOM05D003702 ORTHO05D004653 3.2e-54 216.1 184 56.5
Gorai.008G157600 Gossypium raimondii HOM05D003702 ORTHO05D004653 3.2e-54 216.1 184 56.5
HanXRQChr17g0553131 Helianthus annuus HOM05D003702 ORTHO05D004653 3.2e-54 216.1 184 57.6
Nn4g24020 Nelumbo nucifera HOM05D003702 ORTHO05D004653 3.2e-54 216.1 183 57.9
SalBow8G2252 Salvia bowleyana HOM05D003702 ORTHO05D004653 3.2e-54 216.1 190 55.8
Cfa015818 Carpinus fangiana HOM05D003702 ORTHO05D004653 4.2e-54 215.7 184 56.5
Duzib248G1136 Durio zibethinus HOM05D003702 ORTHO05D004653 4.2e-54 215.7 184 57.1
TAR371G0966 Trochodendron aralioides HOM05D003702 ORTHO05D004653 4.2e-54 215.7 184 58.2
HanXRQChr14g0459241 Helianthus annuus HOM05D003702 ORTHO05D004653 5.5e-54 215.3 185 57.8
Oeu031392.1 Olea europaea HOM05D003702 ORTHO05D004653 5.5e-54 215.3 184 57.6
QL01p003075 Quercus lobata HOM05D003702 ORTHO05D004653 7.1e-54 214.9 183 57.4
Rhsim09G0102000 Rhododendron simsii HOM05D003702 ORTHO05D004653 7.1e-54 214.9 184 56.5
Lsat_1_v5_gn_8_41841 Lactuca sativa HOM05D003702 ORTHO05D004653 9.3e-54 214.5 184 58.2
MBI10_g06746_MAGBIO Magnolia biondii HOM05D003702 ORTHO05D004653 9.3e-54 214.5 185 58.9
MD13G1033100 Malus domestica HOM05D003702 ORTHO05D004653 9.3e-54 214.5 184 56.5
Nitab4.5_0003886g0040 Nicotiana tabacum HOM05D003702 ORTHO05D004653 9.3e-54 214.5 184 57.1
Atru.chr11.329 Acer truncatum HOM05D003702 ORTHO05D004653 1.2e-53 214.2 184 57.1
Thecc.02G215000 Theobroma cacao HOM05D003702 ORTHO05D004653 1.2e-53 214.2 184 56.5
CiPaw.06G015200 Carya illinoinensis HOM05D003702 ORTHO05D004653 1.6e-53 213.8 194 55.7
Cc11_g09310 Coffea canephora HOM05D003702 ORTHO05D004653 2.1e-53 213.4 209 51.2
Duzib268G1865 Durio zibethinus HOM05D003702 ORTHO05D004653 2.1e-53 213.4 184 56.0
TAR629G3334 Trochodendron aralioides HOM05D003702 ORTHO05D004653 2.1e-53 213.4 184 57.6
FAN07G0957 Fragaria x ananassa HOM05D003702 ORTHO05D004653 2.7e-53 213.0 212 50.9
FAN22G0804 Fragaria x ananassa HOM05D003702 ORTHO05D004653 2.7e-53 213.0 211 51.7
Nitab4.5_0004597g0050 Nicotiana tabacum HOM05D003702 ORTHO05D004653 2.7e-53 213.0 184 56.5
Potri.008G126100 Populus trichocarpa HOM05D003702 ORTHO05D004653 2.7e-53 213.0 180 57.8
CDE07G1100 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 3.5e-53 212.6 183 55.7
FAN12G0213 Fragaria x ananassa HOM05D003702 ORTHO05D004653 3.5e-53 212.6 211 51.2
FAN12G3413 Fragaria x ananassa HOM05D003702 ORTHO05D004653 3.5e-53 212.6 211 51.2
FAN17G2320 Fragaria x ananassa HOM05D003702 ORTHO05D004653 3.5e-53 212.6 211 51.2
Nitab4.5_0000350g0060 Nicotiana tabacum HOM05D003702 ORTHO05D004653 3.5e-53 212.6 184 56.5
Phvul.007G034000 Phaseolus vulgaris HOM05D003702 ORTHO05D004653 3.5e-53 212.6 183 56.8
RcHm_v2.0_Chr4g0434061 Rosa chinensis HOM05D003702 ORTHO05D004653 3.5e-53 212.6 184 56.0
MD16G1035000 Malus domestica HOM05D003702 ORTHO05D004653 4.6e-53 212.2 189 54.5
Peaxi162Scf00897g00114 Petunia axillaris HOM05D003702 ORTHO05D004653 4.6e-53 212.2 184 56.5
SalBow8G5575 Salvia bowleyana HOM05D003702 ORTHO05D004653 4.6e-53 212.2 220 50.5
MSTRG.2203 Avicennia marina HOM05D003702 ORTHO05D004653 6.0e-53 211.8 190 53.7
A09p61570 Brassica napus HOM05D003702 ORTHO05D004653 6.0e-53 211.8 190 55.8
PGR102G2387 Punica granatum HOM05D003702 ORTHO05D004653 6.0e-53 211.8 212 50.5
TWI75G1265 Tripterygium wilfordii HOM05D003702 ORTHO05D004653 6.0e-53 211.8 214 50.9
Aqoxy5G03879 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 7.9e-53 211.5 191 56.0
EL10Ac1g01504 Beta vulgaris HOM05D003702 ORTHO05D004653 7.9e-53 211.5 184 56.0
BraA09t41530Z Brassica rapa HOM05D003702 ORTHO05D004653 7.9e-53 211.5 190 55.8
COL.COLO4_38548 Corchorus olitorius HOM05D003702 ORTHO05D004653 7.9e-53 211.5 184 54.9
DCAR_030184 Daucus carota HOM05D003702 ORTHO05D004653 7.9e-53 211.5 184 56.0
FvH4_4g26430 Fragaria vesca HOM05D003702 ORTHO05D004653 7.9e-53 211.5 211 50.7
Glyma.20G122800 Glycine max HOM05D003702 ORTHO05D004653 7.9e-53 211.5 183 56.3
Lj6A750T93 Lonicera japonica HOM05D003702 ORTHO05D004653 7.9e-53 211.5 184 56.0
Prupe.1G319700 Prunus persica HOM05D003702 ORTHO05D004653 7.9e-53 211.5 190 54.2
Lalb_Chr21g0308661 Lupinus albus HOM05D003702 ORTHO05D004653 1.0e-52 211.1 186 54.8
Nitab4.5_0000881g0100 Nicotiana tabacum HOM05D003702 ORTHO05D004653 1.0e-52 211.1 193 54.4
THA.LOC104805051 Tarenaya hassleriana HOM05D003702 ORTHO05D004653 1.0e-52 211.1 183 55.2
CAN.G139.1 Capsicum annuum HOM05D003702 ORTHO05D004653 1.3e-52 210.7 184 55.4
CAN.G1489.18 Capsicum annuum HOM05D003702 ORTHO05D004653 1.3e-52 210.7 184 56.5
PSO017G5274 Papaver somniferum HOM05D003702 ORTHO05D004653 1.3e-52 210.7 185 56.2
Sopen05g004420 Solanum pennellii HOM05D003702 ORTHO05D004653 1.3e-52 210.7 184 56.5
arahy.Tifrunner.gnm1.ann1.8F881C Arachis hypogaea HOM05D003702 ORTHO05D004653 1.8e-52 210.3 211 49.8
arahy.Tifrunner.gnm1.ann1.A779NY Arachis hypogaea HOM05D003702 ORTHO05D004653 1.8e-52 210.3 184 54.9
Eucgr.B02865 Eucalyptus grandis HOM05D003702 ORTHO05D004653 1.8e-52 210.3 214 51.9
Glyma.10G268300 Glycine max HOM05D003702 ORTHO05D004653 1.8e-52 210.3 183 56.3
Gohir.A09G005100 Gossypium hirsutum HOM05D003702 ORTHO05D004653 1.8e-52 210.3 185 55.1
Lj5g0010985 Lotus japonicus HOM05D003702 ORTHO05D004653 1.8e-52 210.3 183 55.2
Manes.14G109300 Manihot esculenta HOM05D003702 ORTHO05D004653 1.8e-52 210.3 184 56.0
Solyc05g008580.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 1.8e-52 210.3 184 56.5
PGSC0003DMG400030564 Solanum tuberosum HOM05D003702 ORTHO05D004653 1.8e-52 210.3 184 56.5
CARHR015630 Cardamine hirsuta HOM05D003702 ORTHO05D004653 2.3e-52 209.9 188 55.3
ECA246G4421 Erigeron canadensis HOM05D003702 ORTHO05D004653 2.3e-52 209.9 184 55.4
Sabra08G0095000 Salix brachista HOM05D003702 ORTHO05D004653 2.3e-52 209.9 184 55.4
Sc14g0007250 Simmondsia chinensis HOM05D003702 ORTHO05D004653 2.3e-52 209.9 184 56.0
Ah.05g167700 Amaranthus hybridus HOM05D003702 ORTHO05D004653 3.9e-52 209.1 184 55.4
AL1G27170 Arabidopsis lyrata HOM05D003702 ORTHO05D004653 3.9e-52 209.1 210 50.0
AT1G15110 Arabidopsis thaliana HOM05D003702 ORTHO05D004653 3.9e-52 209.1 211 49.8
ECA233G3005 Erigeron canadensis HOM05D003702 ORTHO05D004653 3.9e-52 209.1 184 57.1
Gohir.D09G004400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 3.9e-52 209.1 185 55.1
Gorai.006G006000 Gossypium raimondii HOM05D003702 ORTHO05D004653 3.9e-52 209.1 185 55.1
Solyc04g007520.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 5.1e-52 208.8 184 55.4
Sopen04g002600 Solanum pennellii HOM05D003702 ORTHO05D004653 5.1e-52 208.8 184 55.4
A06p11110 Brassica napus HOM05D003702 ORTHO05D004653 6.7e-52 208.4 189 54.5
BraA06t24290Z Brassica rapa HOM05D003702 ORTHO05D004653 6.7e-52 208.4 190 54.2
Carub.0001s1487 Capsella rubella HOM05D003702 ORTHO05D004653 8.7e-52 208.0 210 49.5
CiPaw.05G244900 Carya illinoinensis HOM05D003702 ORTHO05D004653 8.7e-52 208.0 211 51.2
Potri.010G117500 Populus trichocarpa HOM05D003702 ORTHO05D004653 8.7e-52 208.0 184 54.9
Sp1g13450 Schrenkiella parvula HOM05D003702 ORTHO05D004653 8.7e-52 208.0 189 54.5
CsaV3_5G028680 Cucumis sativus L. HOM05D003702 ORTHO05D004653 1.1e-51 207.6 184 54.3
PSO478G4444 Papaver somniferum HOM05D003702 ORTHO05D004653 1.1e-51 207.6 185 55.7
HPP92_008281 Vanilla planifolia HOM05D003702 ORTHO05D004653 1.1e-51 207.6 185 54.6
C05p13230 Brassica napus HOM05D003702 ORTHO05D004653 1.5e-51 207.2 189 54.0
BolC5t30060H Brassica oleracea HOM05D003702 ORTHO05D004653 1.5e-51 207.2 189 54.0
Oeu036128.1 Olea europaea HOM05D003702 ORTHO05D004653 1.5e-51 207.2 184 56.5
Sabra10G0086900 Salix brachista HOM05D003702 ORTHO05D004653 1.5e-51 207.2 184 54.3
Sabra10G0088500 Salix brachista HOM05D003702 ORTHO05D004653 1.5e-51 207.2 184 54.3
Manes.06G063400 Manihot esculenta HOM05D003702 ORTHO05D004653 1.9e-51 206.8 182 54.9
AUR62037259 Chenopodium quinoa HOM05D003702 ORTHO05D004653 2.5e-51 206.5 184 54.3
ClCG01G006000 Citrullus lanatus HOM05D003702 ORTHO05D004653 2.5e-51 206.5 184 54.3
Thhalv10007726m.g Eutrema salsugineum HOM05D003702 ORTHO05D004653 2.5e-51 206.5 188 54.8
Psat6g222840 Pisum sativum HOM05D003702 ORTHO05D004653 2.5e-51 206.5 184 54.3
GSVIVG01008367001 Vitis vinifera HOM05D003702 ORTHO05D004653 3.3e-51 206.1 185 54.6
MELO3C005332.2 Cucumis melo HOM05D003702 ORTHO05D004653 4.3e-51 205.7 184 53.8
Lalb_Chr02g0145651 Lupinus albus HOM05D003702 ORTHO05D004653 4.3e-51 205.7 210 50.0
TPR.G4874 Trifolium pratense HOM05D003702 ORTHO05D004653 4.3e-51 205.7 184 54.3
Ca_30213_v3 Cicer arietinum L. HOM05D003702 ORTHO05D004653 5.7e-51 205.3 184 54.3
BcaC05g25442 Brassica carinata HOM05D003702 ORTHO05D004653 7.4e-51 204.9 181 54.7
Ciclev10015341m.g Citrus clementina HOM05D003702 ORTHO05D004653 9.6e-51 204.5 186 54.3
Medtr1g109120 Medicago truncatula HOM05D003702 ORTHO05D004653 9.6e-51 204.5 184 53.8
MSTRG.7632 Avicennia marina HOM05D003702 ORTHO05D004653 1.3e-50 204.1 185 55.1
BcaB02g06576 Brassica carinata HOM05D003702 ORTHO05D004653 1.3e-50 204.1 183 54.1
Sed0016261 Sechium edule HOM05D003702 ORTHO05D004653 1.6e-50 203.8 184 53.3
BcaNung05515 Brassica carinata HOM05D003702 ORTHO05D004653 2.8e-50 203.0 189 54.0
C08p45160 Brassica napus HOM05D003702 ORTHO05D004653 2.8e-50 203.0 189 54.0
BolC8t52064H Brassica oleracea HOM05D003702 ORTHO05D004653 2.8e-50 203.0 189 54.0
Zm00001eb334750 Zea mays HOM05D003702 ORTHO05D004653 8.2e-50 201.4 183 55.7
MSTRG.874 Avicennia marina HOM05D003702 ORTHO05D004653 1.8e-49 200.3 184 53.8
HPP92_021847 Vanilla planifolia HOM05D003702 ORTHO05D004653 2.4e-49 199.9 183 54.6
Lalb_Chr06g0165751 Lupinus albus HOM05D003702 ORTHO05D004653 5.3e-49 198.7 196 51.0
Peaxi162Scf00205g01127 Petunia axillaris HOM05D003702 ORTHO05D004653 3.4e-48 196.1 224 46.9
Sed0021449 Sechium edule HOM05D003702 ORTHO05D004653 3.4e-48 196.1 218 47.2
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 5.9e-48 195.3 213 47.9
MELO3C012286.2 Cucumis melo HOM05D003702 ORTHO05D004653 5.9e-48 195.3 217 48.4
CsaV3_5G034740 Cucumis sativus L. HOM05D003702 ORTHO05D004653 5.9e-48 195.3 217 47.9
Sed0018132 Sechium edule HOM05D003702 ORTHO05D004653 7.6e-48 194.9 218 47.7
Pp3c4_15740 Physcomitrium patens HOM05D003702 ORTHO05D004653 3.2e-46 189.5 204 50.5
vmacro12220 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 7.2e-46 188.3 268 39.9
Mapoly0057s0110 Marchantia polymorpha HOM05D003702 ORTHO05D004653 1.2e-45 187.6 212 45.3
unitig_746.g26864 Utricularia gibba HOM05D003702 ORTHO05D004653 2.3e-44 183.3 166 54.2
Lsat_1_v5_gn_3_56601 Lactuca sativa HOM05D003702 ORTHO05D004653 8.7e-44 181.4 184 52.2
HPP92_026069 Vanilla planifolia HOM05D003702 ORTHO05D004653 1.1e-43 181.0 166 54.8
CDE06G0787 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 3.1e-41 172.9 146 58.2
SGA_v2.0_scaffold170G38819 Striga asiatica HOM05D003702 ORTHO05D004653 1.2e-40 171.0 197 47.2
ClCG05G022350 Citrullus lanatus HOM05D003702 ORTHO05D004653 2.6e-40 169.9 204 46.6
Pp3c26_4170 Physcomitrium patens HOM05D003702 ORTHO05D004653 5.0e-39 165.6 184 46.2
BcaB03g14561 Brassica carinata HOM05D003702 ORTHO05D004653 6.1e-37 158.7 157 51.6
Migut.L01016 Erythranthe guttata HOM05D003702 ORTHO05D004653 2.0e-35 153.7 176 46.0
Zm00001eb335270 Zea mays HOM05D003702 ORTHO05D004653 1.4e-33 147.5 135 56.3
vmacro10616 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 1.2e-32 144.4 259 34.4
Duzib251G0696 Durio zibethinus HOM05D003702 ORTHO05D004653 6.5e-31 138.7 147 51.0
Cpa.g.sc65.87 Carica papaya HOM05D003702 ORTHO05D004653 9.4e-30 134.8 151 46.4
AagrBONN_evm.TU.Sc2ySwM_117.3898 Anthoceros agrestis HOM05D003702 ORTHO05D004653 1.2e-29 134.4 138 50.0
Zm00001eb103650 Zea mays HOM05D003702 ORTHO05D004653 3.0e-28 129.8 67 85.1
Sed0022429 Sechium edule HOM05D003702 ORTHO05D004653 8.8e-28 128.3 131 51.1
Os01g0118300 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 7.4e-27 125.2 140 47.9
Zm00001eb125990 Zea mays HOM05D003702 ORTHO05D004653 1.1e-25 121.3 131 51.1
CSS0004358 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 4.1e-25 119.4 67 80.6
CSS0043066 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 2.6e-24 116.7 74 70.3
Hund20721 Selenicereus undatus HOM05D003702 ORTHO05D004653 4.5e-24 115.9 67 73.1
Aqoxy7G02147 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 1.3e-23 114.4 67 71.6
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 1.3e-23 114.4 68 73.5
SEGI_02132 Sequoiadendron giganteum HOM05D003702 ORTHO05D004653 2.5e-22 110.2 74 64.9
MCO02G069 Micromonas commoda HOM05D003702 ORTHO05D004653 1.5e-19 100.9 111 44.1
Actinidia16697 Actinidia chinensis HOM05D003702 ORTHO05D004653 2.8e-18 96.7 167 38.9
Aqoxy6G00509 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 1.8e-17 94.0 118 44.1
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 2.4e-17 93.6 45 82.2
SHI16230 Sapria himalayana HOM05D000105 ORTHO05D000023 9.4e-14 81.6 100 45.0
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 1.8e-12 77.4 106 43.4
Zm00001eb367010 Zea mays HOM05D003702 ORTHO05D004653 1.7e-10 70.9 47 66.0


User provided reference genes

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