Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0683400 Oryza sativa ssp. japonica HOM05D005638 ORTHO05D006913 2.3e-260 901.7 471 100.0
Zm00001eb156550 Zea mays HOM05D005638 ORTHO05D006913 1.4e-156 557.0 466 68.2
CSS0002078 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 3.6e-152 542.3 457 60.4
CSS0005399 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 7.9e-152 541.2 457 60.4
Nn4g24022 Nelumbo nucifera HOM05D005638 ORTHO05D006913 3.0e-151 539.3 457 60.4
HanXRQChr17g0534901 Helianthus annuus HOM05D005638 ORTHO05D006913 2.0e-147 526.6 455 59.8
Ciclev10015376m.g Citrus clementina HOM05D005638 ORTHO05D006913 8.5e-146 521.2 457 60.4
Sopen05g004380 Solanum pennellii HOM05D005638 ORTHO05D006913 1.2e-144 517.3 456 58.6
MSTRG.2199 Avicennia marina HOM05D005638 ORTHO05D006913 2.1e-144 516.5 458 58.5
EL10Ac6g14273 Beta vulgaris HOM05D005638 ORTHO05D006913 2.7e-144 516.2 456 58.6
Migut.E00391 Erythranthe guttata HOM05D005638 ORTHO05D006913 6.1e-144 515.0 457 57.8
ECA246G4189 Erigeron canadensis HOM05D005638 ORTHO05D006913 1.0e-143 514.2 453 58.3
Cc11_g09280 Coffea canephora HOM05D005638 ORTHO05D006913 1.4e-143 513.8 455 58.2
Solyc05g008540.3 Solanum lycopersicum HOM05D005638 ORTHO05D006913 2.3e-143 513.1 454 58.4
Prupe.1G319900 Prunus persica HOM05D005638 ORTHO05D006913 3.0e-143 512.7 463 57.2
CAN.G1489.15 Capsicum annuum HOM05D005638 ORTHO05D006913 3.9e-143 512.3 454 58.4
Potri.008G126300 Populus trichocarpa HOM05D005638 ORTHO05D006913 6.7e-143 511.5 458 57.2
PGSC0003DMG401030517 Solanum tuberosum HOM05D005638 ORTHO05D006913 6.7e-143 511.5 455 57.8
FvH4_4g26400 Fragaria vesca HOM05D005638 ORTHO05D006913 1.1e-142 510.8 458 57.9
Hma1.2p1_0882F.1_g232180 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 1.1e-142 510.8 447 58.6
Lsat_1_v5_gn_3_11020 Lactuca sativa HOM05D005638 ORTHO05D006913 2.0e-142 510.0 457 58.4
FAN12G2479 Fragaria x ananassa HOM05D005638 ORTHO05D006913 2.6e-142 509.6 458 57.6
Haze_00683 Corylus avellana HOM05D005638 ORTHO05D006913 3.3e-142 509.2 466 57.9
FAN12G3267 Fragaria x ananassa HOM05D005638 ORTHO05D006913 3.3e-142 509.2 458 57.9
QL01p003053 Quercus lobata HOM05D005638 ORTHO05D006913 5.7e-142 508.4 481 56.1
CANSAT01G0033 Cannabis sativa HOM05D005638 ORTHO05D006913 2.2e-141 506.5 459 58.2
Gorai.013G001800 Gossypium raimondii HOM05D005638 ORTHO05D006913 1.4e-140 503.8 457 56.9
COL.COLO4_22224 Corchorus olitorius HOM05D005638 ORTHO05D006913 4.1e-140 502.3 456 56.6
Eucgr.H00037 Eucalyptus grandis HOM05D005638 ORTHO05D006913 4.1e-140 502.3 455 57.4
Hund25015 Selenicereus undatus HOM05D005638 ORTHO05D006913 7.0e-140 501.5 458 57.4
Sp2g12590 Schrenkiella parvula HOM05D005638 ORTHO05D006913 9.1e-140 501.1 455 56.3
HPP92_020141 Vanilla planifolia HOM05D005638 ORTHO05D006913 9.1e-140 501.1 459 55.8
GSVIVG01011806001 Vitis vinifera HOM05D005638 ORTHO05D006913 1.6e-139 500.4 455 58.2
Gohir.A13G000300 Gossypium hirsutum HOM05D005638 ORTHO05D006913 2.0e-139 500.0 456 57.0
Thecc.05G134700 Theobroma cacao HOM05D005638 ORTHO05D006913 2.0e-139 500.0 456 57.2
Aqoxy5G03877 Aquilegia oxysepala HOM05D005638 ORTHO05D006913 2.6e-139 499.6 463 56.4
BcaC06g31332 Brassica carinata HOM05D005638 ORTHO05D006913 3.5e-139 499.2 455 55.2
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 4.5e-139 498.8 469 55.4
AL5G10070 Arabidopsis lyrata HOM05D005638 ORTHO05D006913 5.9e-139 498.4 455 55.8
CARHR143670 Cardamine hirsuta HOM05D005638 ORTHO05D006913 7.7e-139 498.0 455 55.8
Carub.0005s0010 Capsella rubella HOM05D005638 ORTHO05D006913 1.0e-138 497.7 455 56.0
MD16G1034700 Malus domestica HOM05D005638 ORTHO05D006913 1.3e-138 497.3 454 58.1
TWI75G0624 Tripterygium wilfordii HOM05D005638 ORTHO05D006913 2.9e-138 496.1 457 56.0
Sabra08G0095100 Salix brachista HOM05D005638 ORTHO05D006913 3.8e-138 495.7 449 56.8
arahy.Tifrunner.gnm1.ann1.CLD3MC Arachis hypogaea HOM05D005638 ORTHO05D006913 5.0e-138 495.4 455 55.8
Thhalv10000894m.g Eutrema salsugineum HOM05D005638 ORTHO05D006913 5.0e-138 495.4 461 55.1
Nitab4.5_0000350g0120 Nicotiana tabacum HOM05D005638 ORTHO05D006913 5.0e-138 495.4 463 56.4
THA.LOC104805050 Tarenaya hassleriana HOM05D005638 ORTHO05D006913 1.1e-137 494.2 449 57.5
arahy.Tifrunner.gnm1.ann1.NRC6UQ Arachis hypogaea HOM05D005638 ORTHO05D006913 1.9e-137 493.4 455 55.8
Sed0003483 Sechium edule HOM05D005638 ORTHO05D006913 1.6e-136 490.3 452 57.1
Sc14g0007070 Simmondsia chinensis HOM05D005638 ORTHO05D006913 2.1e-136 490.0 456 55.3
Psat6g222760 Pisum sativum HOM05D005638 ORTHO05D006913 3.6e-136 489.2 455 55.6
CsaV3_5G010590 Cucumis sativus L. HOM05D005638 ORTHO05D006913 1.4e-135 487.3 462 54.8
MELO3C034164.2 Cucumis melo HOM05D005638 ORTHO05D006913 3.0e-135 486.1 462 55.4
Medtr1g109100 Medicago truncatula HOM05D005638 ORTHO05D006913 3.0e-135 486.1 451 55.2
PGR119G2299 Punica granatum HOM05D005638 ORTHO05D006913 8.8e-135 484.6 457 56.0
RcHm_v2.0_Chr4g0434031 Rosa chinensis HOM05D005638 ORTHO05D006913 2.0e-134 483.4 460 55.7
A06p44660 Brassica napus HOM05D005638 ORTHO05D006913 3.3e-134 482.6 484 52.7
Peaxi162Scf00205g01130 Petunia axillaris HOM05D005638 ORTHO05D006913 3.3e-134 482.6 445 56.6
C07p31590 Brassica napus HOM05D005638 ORTHO05D006913 5.7e-134 481.9 484 52.3
Aa31LG2G8760 Aethionema arabicum HOM05D005638 ORTHO05D006913 7.5e-134 481.5 455 54.3
FAN07G1772 Fragaria x ananassa HOM05D005638 ORTHO05D006913 7.5e-134 481.5 501 53.5
Phvul.007G034200 Phaseolus vulgaris HOM05D005638 ORTHO05D006913 9.7e-134 481.1 456 55.3
BcaC06g34215 Brassica carinata HOM05D005638 ORTHO05D006913 2.2e-133 479.9 484 52.1
ClCG07G004650 Citrullus lanatus HOM05D005638 ORTHO05D006913 1.1e-132 477.6 471 54.4
AT2G01120 Arabidopsis thaliana HOM05D005638 ORTHO05D006913 1.4e-132 477.2 456 54.8
Oeu064207.2 Olea europaea HOM05D005638 ORTHO05D006913 9.1e-132 474.6 506 51.6
Lalb_Chr02g0145641 Lupinus albus HOM05D005638 ORTHO05D006913 2.0e-131 473.4 454 53.5
Ca_30212_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 5.9e-131 471.9 445 55.3
CiPaw.05G245200 Carya illinoinensis HOM05D005638 ORTHO05D006913 1.3e-130 470.7 457 55.1
Glyma.10G268100 Glycine max HOM05D005638 ORTHO05D006913 1.7e-130 470.3 455 54.3
Lj5g0007245 Lotus japonicus HOM05D005638 ORTHO05D006913 1.7e-130 470.3 447 55.0
vmacro10617 Vaccinium macrocarpon HOM05D005638 ORTHO05D006913 2.5e-129 466.5 500 51.6
Glyma.20G123000 Glycine max HOM05D005638 ORTHO05D006913 6.1e-128 461.8 455 53.8
Lj2C166G5 Lonicera japonica HOM05D005638 ORTHO05D006913 8.0e-128 461.5 420 56.9
PSO017G2298 Papaver somniferum HOM05D005638 ORTHO05D006913 5.2e-127 458.8 460 54.1
ATR0691G289 Amborella trichopoda HOM05D005638 ORTHO05D006913 6.8e-127 458.4 463 54.9
PSO478G2841 Papaver somniferum HOM05D005638 ORTHO05D006913 1.2e-126 457.6 460 54.1
Manes.10G073400 Manihot esculenta HOM05D005638 ORTHO05D006913 5.7e-126 455.3 457 52.1
PSO782G2730 Papaver somniferum HOM05D005638 ORTHO05D006913 2.2e-125 453.4 460 53.9
SEGI_39107 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 6.3e-125 451.8 457 52.3
Atru.chr11.333 Acer truncatum HOM05D005638 ORTHO05D006913 4.1e-124 449.1 334 66.2
SalBow8G2600 Salvia bowleyana HOM05D005638 ORTHO05D006913 1.2e-123 447.6 459 51.9
BcaB07g30423 Brassica carinata HOM05D005638 ORTHO05D006913 1.6e-123 447.2 482 50.2
MBI10_g06749_MAGBIO Magnolia biondii HOM05D005638 ORTHO05D006913 2.7e-123 446.4 405 58.0
Cpa.g.sc65.90 Carica papaya HOM05D005638 ORTHO05D006913 4.5e-123 445.7 427 55.5
Duzib106G1906 Durio zibethinus HOM05D005638 ORTHO05D006913 1.0e-122 444.5 447 53.2
Dinv16164 Davidia involucrata HOM05D005638 ORTHO05D006913 3.8e-122 442.6 344 64.5
AUR62042716 Chenopodium quinoa HOM05D005638 ORTHO05D006913 1.5e-121 440.7 488 50.6
FAN22G2072 Fragaria x ananassa HOM05D005638 ORTHO05D006913 4.2e-121 439.1 488 50.8
FAN17G1216 Fragaria x ananassa HOM05D005638 ORTHO05D006913 8.0e-120 434.9 481 52.0
BraA06t27339Z Brassica rapa HOM05D005638 ORTHO05D006913 3.0e-119 433.0 461 49.9
Nitab4.5_0013146g0020 Nicotiana tabacum HOM05D005638 ORTHO05D006913 2.8e-117 426.4 521 46.4
VMungo0720G2401 Vigna mungo HOM05D005638 ORTHO05D006913 1.4e-116 424.1 332 64.2
unitig_52.g17425 Utricularia gibba HOM05D005638 ORTHO05D006913 2.4e-116 423.3 357 59.4
Gohir.D13G001900 Gossypium hirsutum HOM05D005638 ORTHO05D006913 1.8e-111 407.1 457 49.2
TAR622G0052 Trochodendron aralioides HOM05D005638 ORTHO05D006913 4.6e-107 392.5 314 65.0
Atru.chr11.340 Acer truncatum HOM05D005638 ORTHO05D006913 3.6e-104 382.9 350 57.7
Rhsim11G0032100 Rhododendron simsii HOM05D005638 ORTHO05D006913 6.8e-103 378.6 285 66.3
Ah.03g138510 Amaranthus hybridus HOM05D005638 ORTHO05D006913 3.4e-94 349.7 283 62.2
Mapoly0031s0066 Marchantia polymorpha HOM05D005638 ORTHO05D006913 5.8e-94 349.0 462 43.3
Pp3c16_11150 Physcomitrium patens HOM05D005638 ORTHO05D006913 6.0e-91 339.0 459 43.1
CBR_g38777 Chara braunii HOM05D005638 ORTHO05D006913 8.9e-87 325.1 451 41.2
TPR.G31713 Trifolium pratense HOM05D005638 ORTHO05D006913 1.5e-86 324.3 264 62.5
Dinv04905 Davidia involucrata HOM05D005638 ORTHO05D006913 9.6e-81 305.1 458 40.4
Ca_23705_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 4.4e-78 296.2 278 56.5
SGA_v2.0_scaffold170G38821 Striga asiatica HOM05D005638 ORTHO05D006913 4.4e-78 296.2 301 53.8
A02p31700 Brassica napus HOM05D005638 ORTHO05D006913 8.4e-77 292.0 318 51.6
Hma1.2p1_0882F.1_g232170 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 9.3e-76 288.5 254 60.2
Cfa015815 Carpinus fangiana HOM05D005638 ORTHO05D006913 2.1e-75 287.3 256 60.9
BcaC03g16999 Brassica carinata HOM05D005638 ORTHO05D006913 6.6e-74 282.3 242 57.0
AagrBONN_evm.TU.Sc2ySwM_344.3309 Anthoceros agrestis HOM05D005638 ORTHO05D006913 5.8e-70 269.2 309 49.2
C02p49080 Brassica napus HOM05D005638 ORTHO05D006913 2.4e-68 263.8 310 46.5
BolC2t10998H Brassica oleracea HOM05D005638 ORTHO05D006913 8.7e-66 255.4 252 51.2
AUR62014211 Chenopodium quinoa HOM05D005638 ORTHO05D006913 3.2e-60 236.9 403 39.7
PSO170G3371 Papaver somniferum HOM05D005638 ORTHO05D006913 1.6e-56 224.6 235 51.9
CDE11G0817 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 7.4e-49 199.1 124 78.2
PRCOL_00001621 Prasinoderma coloniale HOM05D005638 ORTHO05D006913 4.8e-48 196.4 479 30.7
MD13G1032700 Malus domestica HOM05D005638 ORTHO05D006913 9.0e-47 192.2 166 57.8
SEGI_20204 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 2.2e-45 187.6 179 53.6
Hma1.2p1_0882F.1_g232190 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 8.8e-42 175.6 137 61.3
Thecc.06G067600 Theobroma cacao HOM05D005638 ORTHO05D006913 1.8e-39 167.9 184 50.0
SMO351G0247 Selaginella moellendorffii HOM05D005638 ORTHO05D006913 2.6e-38 164.1 445 29.7
MD13G1032600 Malus domestica HOM05D005638 ORTHO05D006913 1.2e-35 155.2 198 46.5
MCO02G007 Micromonas commoda HOM05D005638 ORTHO05D006913 2.8e-32 144.1 345 31.3
CDE11G0802 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 1.4e-31 141.7 103 66.0
BraA02t08176Z Brassica rapa HOM05D005638 ORTHO05D006913 2.4e-31 141.0 107 70.1
TPR.G15740 Trifolium pratense HOM05D005638 ORTHO05D006913 1.9e-28 131.3 105 66.7
Rhsim11G0032000 Rhododendron simsii HOM05D005638 ORTHO05D006913 3.8e-21 107.1 197 36.0
Cre17.g726500 Chlamydomonas reinhardtii HOM05D005638 ORTHO05D006913 3.4e-17 94.0 122 42.6
Cfa022174 Carpinus fangiana HOM05D005638 ORTHO05D006913 7.5e-17 92.8 379 25.6
Rhsim09G0101800 Rhododendron simsii HOM05D005638 ORTHO05D006913 2.2e-16 91.3 114 50.9
SHI16222 Sapria himalayana HOM05D000030 ORTHO05D007344 3.1e-15 87.4 54 81.5
TPR.G7417 Trifolium pratense HOM05D005638 ORTHO05D006913 1.2e-14 85.5 139 38.1
SEGI_29357 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 3.2e-12 77.4 138 34.8
FAN28G2655 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.3e-08 65.5 110 35.5
Rhsim09G0101700 Rhododendron simsii HOM05D005638 ORTHO05D006913 1.7e-08 65.1 67 44.8


User provided reference genes

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