Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0660900 Oryza sativa ssp. japonica HOM05D006935 ORTHO05D008944 2.2e-139 499.2 293 100.0
Zm00001eb359580 Zea mays HOM05D006935 ORTHO05D008944 4.4e-124 448.4 241 91.7
Actinidia19311 Actinidia chinensis HOM05D006935 ORTHO05D008944 1.6e-105 386.7 236 79.7
HanXRQChr16g0517271 Helianthus annuus HOM05D006935 ORTHO05D008944 4.5e-105 385.2 239 77.8
MBI16_g05651_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 1.3e-104 383.6 228 81.6
Duzib068G1137 Durio zibethinus HOM05D006935 ORTHO05D008944 2.5e-103 379.4 240 77.9
Thecc.03G010500 Theobroma cacao HOM05D006935 ORTHO05D008944 2.5e-103 379.4 238 78.2
ECA236G1157 Erigeron canadensis HOM05D006935 ORTHO05D008944 5.5e-103 378.3 237 76.8
Eucgr.B00368 Eucalyptus grandis HOM05D006935 ORTHO05D008944 5.5e-103 378.3 236 77.5
Gohir.A11G001400 Gossypium hirsutum HOM05D006935 ORTHO05D008944 5.5e-103 378.3 240 77.1
Cpa.g.sc124.48 Carica papaya HOM05D006935 ORTHO05D008944 1.2e-102 377.1 242 75.6
Gohir.D11G001000 Gossypium hirsutum HOM05D006935 ORTHO05D008944 1.2e-102 377.1 240 76.7
Gorai.007G001900 Gossypium raimondii HOM05D006935 ORTHO05D008944 1.2e-102 377.1 240 76.7
CSS0041391 Camellia sinensis var. sinensis HOM05D006935 ORTHO05D008944 1.6e-102 376.7 239 77.0
MBI16_g32800_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 1.6e-102 376.7 239 77.8
Lsat_1_v5_gn_5_17180 Lactuca sativa HOM05D006935 ORTHO05D008944 3.6e-102 375.6 237 75.5
Sc12g0005390 Simmondsia chinensis HOM05D006935 ORTHO05D008944 3.6e-102 375.6 241 74.7
QL10p011920 Quercus lobata HOM05D006935 ORTHO05D008944 6.1e-102 374.8 240 76.7
Rhsim08G0171100 Rhododendron simsii HOM05D006935 ORTHO05D008944 6.1e-102 374.8 236 77.1
SalBow5G1860 Salvia bowleyana HOM05D006935 ORTHO05D008944 8.0e-102 374.4 238 76.9
vmacro19376 Vaccinium macrocarpon HOM05D006935 ORTHO05D008944 8.0e-102 374.4 238 76.1
CiPaw.11G027700 Carya illinoinensis HOM05D006935 ORTHO05D008944 1.4e-101 373.6 238 76.9
THA.LOC104798977 Tarenaya hassleriana HOM05D006935 ORTHO05D008944 1.4e-101 373.6 237 76.4
GSVIVG01007766001 Vitis vinifera HOM05D006935 ORTHO05D008944 2.3e-101 372.9 241 75.9
FvH4_5g05200 Fragaria vesca HOM05D006935 ORTHO05D008944 5.2e-101 371.7 236 76.7
Nn4g22789 Nelumbo nucifera HOM05D006935 ORTHO05D008944 5.2e-101 371.7 238 76.5
Migut.I00022 Erythranthe guttata HOM05D006935 ORTHO05D008944 6.8e-101 371.3 240 74.2
Aqoxy3G02966 Aquilegia oxysepala HOM05D006935 ORTHO05D008944 1.2e-100 370.5 238 76.1
MSTRG.11442 Avicennia marina HOM05D006935 ORTHO05D008944 1.2e-100 370.5 238 74.4
COL.COLO4_04599 Corchorus olitorius HOM05D006935 ORTHO05D008944 2.0e-100 369.8 238 76.5
Cc04_g13740 Coffea canephora HOM05D006935 ORTHO05D008944 2.6e-100 369.4 246 74.8
Sopen03g033350 Solanum pennellii HOM05D006935 ORTHO05D008944 2.6e-100 369.4 234 76.9
Haze_07457 Corylus avellana HOM05D006935 ORTHO05D008944 4.4e-100 368.6 238 76.1
Manes.06G104000 Manihot esculenta HOM05D006935 ORTHO05D008944 4.4e-100 368.6 239 76.2
Atru.chr9.2451 Acer truncatum HOM05D006935 ORTHO05D008944 5.7e-100 368.2 242 75.6
AL8G39840 Arabidopsis lyrata HOM05D006935 ORTHO05D008944 5.7e-100 368.2 238 76.1
PGSC0003DMG400024494 Solanum tuberosum HOM05D006935 ORTHO05D008944 9.8e-100 367.5 234 76.5
SGA_v2.0_scaffold90G27953 Striga asiatica HOM05D006935 ORTHO05D008944 9.8e-100 367.5 241 73.4
Thhalv10004703m.g Eutrema salsugineum HOM05D006935 ORTHO05D008944 1.3e-99 367.1 238 75.6
MD14G1182500 Malus domestica HOM05D006935 ORTHO05D008944 1.3e-99 367.1 242 74.0
VMungo1215G2532 Vigna mungo HOM05D006935 ORTHO05D008944 1.3e-99 367.1 239 74.9
Carub.0008s2355 Capsella rubella HOM05D006935 ORTHO05D008944 2.2e-99 366.3 238 74.4
Sp2g25990 Schrenkiella parvula HOM05D006935 ORTHO05D008944 2.2e-99 366.3 236 75.0
BraA06t25905Z Brassica rapa HOM05D006935 ORTHO05D008944 2.8e-99 365.9 238 75.6
CANSAT80G0279 Cannabis sativa HOM05D006935 ORTHO05D008944 2.8e-99 365.9 242 74.0
Sabra15G0098700 Salix brachista HOM05D006935 ORTHO05D008944 2.8e-99 365.9 236 75.0
TPR.G37522 Trifolium pratense HOM05D006935 ORTHO05D008944 2.8e-99 365.9 238 75.2
TWI81G0925 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 2.8e-99 365.9 237 77.2
TWI81G0947 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 2.8e-99 365.9 237 77.2
BcaB02g09696 Brassica carinata HOM05D006935 ORTHO05D008944 3.7e-99 365.5 238 75.2
A06p29590 Brassica napus HOM05D006935 ORTHO05D008944 3.7e-99 365.5 238 75.2
Glyma.05G036900 Glycine max HOM05D006935 ORTHO05D008944 3.7e-99 365.5 239 75.3
Lalb_Chr07g0182691 Lupinus albus HOM05D006935 ORTHO05D008944 3.7e-99 365.5 240 74.2
TAR622G0425 Trochodendron aralioides HOM05D006935 ORTHO05D008944 3.7e-99 365.5 230 77.8
BcaC01g02525 Brassica carinata HOM05D006935 ORTHO05D008944 4.8e-99 365.2 238 75.6
C03p63900 Brassica napus HOM05D006935 ORTHO05D008944 4.8e-99 365.2 238 75.6
BolC3t18645H Brassica oleracea HOM05D006935 ORTHO05D008944 4.8e-99 365.2 238 75.6
Hund09430 Selenicereus undatus HOM05D006935 ORTHO05D004872 4.8e-99 365.2 232 76.3
AT5G62840 Arabidopsis thaliana HOM05D006935 ORTHO05D008944 6.3e-99 364.8 238 75.2
Phvul.003G199600 Phaseolus vulgaris HOM05D006935 ORTHO05D008944 6.3e-99 364.8 239 74.1
Ah.02g110460 Amaranthus hybridus HOM05D006935 ORTHO05D008944 8.3e-99 364.4 238 72.7
RcHm_v2.0_Chr7g0193711 Rosa chinensis HOM05D006935 ORTHO05D008944 1.4e-98 363.6 236 74.6
Solyc03g114250.4 Solanum lycopersicum HOM05D006935 ORTHO05D008944 1.8e-98 363.2 231 76.2
Potri.015G074700 Populus trichocarpa HOM05D006935 ORTHO05D008944 2.4e-98 362.8 238 73.9
Aa31LG11G860 Aethionema arabicum HOM05D006935 ORTHO05D008944 3.1e-98 362.5 236 75.4
PGR083G2867 Punica granatum HOM05D006935 ORTHO05D008944 3.1e-98 362.5 238 74.8
CARHR276620 Cardamine hirsuta HOM05D006935 ORTHO05D008944 4.1e-98 362.1 238 73.5
CsaV3_1G008420 Cucumis sativus L. HOM05D006935 ORTHO05D008944 4.1e-98 362.1 238 73.5
unitig_749.g13472 Utricularia gibba HOM05D006935 ORTHO05D008944 4.1e-98 362.1 237 75.1
Ciclev10021410m.g Citrus clementina HOM05D006935 ORTHO05D008944 5.4e-98 361.7 238 74.8
Lj4g0026943 Lotus japonicus HOM05D006935 ORTHO05D008944 7.0e-98 361.3 234 75.2
PSO302G0172 Papaver somniferum HOM05D006935 ORTHO05D008944 9.1e-98 360.9 232 75.9
HPP92_024712 Vanilla planifolia HOM05D006935 ORTHO05D008944 1.6e-97 360.1 232 75.9
AUR62008221 Chenopodium quinoa HOM05D006935 ORTHO05D008944 6.6e-96 354.8 239 73.6
FAN18G4193 Fragaria x ananassa HOM05D006935 ORTHO05D004872 1.1e-95 354.0 227 76.7
EL10Ac5g10748 Beta vulgaris HOM05D006935 ORTHO05D008944 2.5e-95 352.8 225 75.1
CDE04G2457 Ceratophyllum demersum HOM05D005049 ORTHO05D004872 3.3e-95 352.4 233 73.8
FAN04G2667 Fragaria x ananassa HOM05D006935 ORTHO05D008944 3.3e-95 352.4 225 77.3
Medtr4g106970 Medicago truncatula HOM05D006935 ORTHO05D008944 5.5e-95 351.7 238 71.8
ClCG01G013080 Citrullus lanatus HOM05D006935 ORTHO05D008944 7.2e-95 351.3 225 76.0
MELO3C002259.2 Cucumis melo HOM05D006935 ORTHO05D008944 9.5e-95 350.9 225 76.4
Cfa019105 Carpinus fangiana HOM05D006935 ORTHO05D004872 1.6e-94 350.1 227 76.7
Nitab4.5_0005862g0020 Nicotiana tabacum HOM05D006935 ORTHO05D008944 3.6e-94 349.0 271 66.1
SEGI_12501 Sequoiadendron giganteum HOM05D006935 ORTHO05D008944 9.8e-92 340.9 238 68.5
Nitab4.5_0000852g0050 Nicotiana tabacum HOM05D006935 ORTHO05D008944 1.7e-91 340.1 231 74.0
AUR62030975 Chenopodium quinoa HOM05D006935 ORTHO05D008944 4.1e-90 335.5 243 68.7
Dinv09149 Davidia involucrata HOM05D006935 ORTHO05D008944 2.9e-88 329.3 206 79.1
CAN.G781.17 Capsicum annuum HOM05D006935 ORTHO05D008944 2.1e-86 323.2 198 79.8
Oeu016368.1 Olea europaea HOM05D006935 ORTHO05D008944 6.8e-85 318.2 238 67.6
Mapoly0091s0071 Marchantia polymorpha HOM05D006935 ORTHO05D008944 2.6e-84 316.2 238 67.6
Peaxi162Scf00017g02821 Petunia axillaris HOM05D006935 ORTHO05D008944 3.7e-83 312.4 200 75.5
Pp3c16_7000 Physcomitrium patens HOM05D006935 ORTHO05D008944 6.4e-83 311.6 239 65.7
Psat4g057680 Pisum sativum HOM05D006935 ORTHO05D008944 6.4e-83 311.6 198 75.8
Ca_21910_v3 Cicer arietinum L. HOM05D006935 ORTHO05D008944 9.2e-82 307.8 198 75.3
ATR0730G238 Amborella trichopoda HOM05D006935 ORTHO05D008944 3.0e-72 276.2 252 57.9
SMO141G0200 Selaginella moellendorffii HOM05D006935 ORTHO05D008944 1.9e-71 273.5 182 72.0
AagrBONN_evm.TU.Sc2ySwM_117.38 Anthoceros agrestis HOM05D006935 ORTHO05D008944 2.5e-71 273.1 198 68.2
Peaxi162Scf00017g02830 Petunia axillaris HOM05D006935 ORTHO05D008944 2.5e-71 273.1 209 67.5
FAN08G3443 Fragaria x ananassa HOM05D006935 ORTHO05D004872 3.6e-70 269.2 174 75.9
EL10Ac5g10761 Beta vulgaris HOM05D006935 ORTHO05D008944 8.6e-64 248.1 221 60.2
Cre06.g272300 Chlamydomonas reinhardtii HOM05D006935 ORTHO05D008944 3.5e-57 226.1 242 52.5
Prupe.5G175000 Prunus persica HOM05D006935 ORTHO05D008944 3.9e-56 222.6 143 75.5
Hma1.2p1_0176F.1_g077560 Hydrangea macrophylla HOM05D006935 ORTHO05D008944 2.5e-47 193.4 127 71.7
Actinidia20183 Actinidia chinensis HOM05D006935 ORTHO05D008944 2.1e-46 190.3 117 80.3
Sed0005822 Sechium edule HOM05D006935 ORTHO05D008944 3.6e-46 189.5 128 70.3
arahy.Tifrunner.gnm1.ann1.0F4FSZ Arachis hypogaea HOM05D006935 ORTHO05D008944 6.9e-45 185.3 113 80.5
arahy.Tifrunner.gnm1.ann1.209TGD Arachis hypogaea HOM05D006935 ORTHO05D008944 6.9e-45 185.3 115 79.1
Lj5C123T7 Lonicera japonica HOM05D006935 ORTHO05D008944 4.6e-33 146.0 108 63.0
Psat4g057640 Pisum sativum HOM05D006935 ORTHO05D008944 6.7e-32 142.1 218 39.0
Lj5C123T8 Lonicera japonica HOM05D006935 ORTHO05D008944 4.2e-26 122.9 75 78.7
PRCOL_00001554 Prasinoderma coloniale HOM05D006935 ORTHO05D008944 2.3e-24 117.1 216 36.1
MD06G1175700 Malus domestica HOM05D006935 ORTHO05D008944 1.6e-22 110.9 221 35.3
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 4.2e-18 96.3 212 34.4
Actinidia01759 Actinidia chinensis HOM05D006935 ORTHO05D008944 9.1e-13 78.6 63 63.5
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 6.5e-11 72.4 207 30.0
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 4.2e-10 69.7 188 31.9
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 9.4e-10 68.6 182 32.4
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 1.1e-07 61.6 226 28.3
Hund09427 Selenicereus undatus HOM05D006935 ORTHO05D008944 1.5e-07 61.2 46 69.6
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.0e-07 60.8 180 31.7
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 3.3e-07 60.1 194 26.8
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 1.3e-06 58.2 192 28.1
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 1.3e-06 58.2 186 30.1
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 2.2e-06 57.4 186 28.0
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 2.2e-06 57.4 179 29.6
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 2.2e-06 57.4 228 27.2
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 2.2e-06 57.4 181 30.4
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 2.8e-06 57.0 183 28.4
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 2.8e-06 57.0 226 26.5
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 2.8e-06 57.0 183 29.0
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.8e-06 57.0 179 29.6
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 3.7e-06 56.6 189 29.1
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 4.8e-06 56.2 190 28.9
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 4.8e-06 56.2 190 28.9
Nn4g24775 Nelumbo nucifera HOM05D006935 ORTHO05D008944 4.8e-06 56.2 33 69.7
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 4.8e-06 56.2 181 30.4
DCAR_006105 Daucus carota HOM05D006935 ORTHO05D008944 8.2e-06 55.5 32 81.2
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 8.2e-06 55.5 179 29.6


User provided reference genes

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