Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 3.0e-50 201.4 96 100.0
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 8.6e-45 183.3 93 93.5
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 2.6e-41 171.8 94 80.9
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 5.7e-41 170.6 93 82.8
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 7.5e-41 170.2 93 82.8
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 1.7e-40 169.1 93 79.6
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 1.7e-40 169.1 92 80.4
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 1.7e-40 169.1 93 81.7
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 2.2e-40 168.7 93 79.6
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 2.8e-40 168.3 93 79.6
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 3.7e-40 167.9 93 80.6
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 4.9e-40 167.5 93 80.6
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 4.9e-40 167.5 93 80.6
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 4.9e-40 167.5 93 79.6
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 4.9e-40 167.5 92 79.3
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 4.9e-40 167.5 92 79.3
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 4.9e-40 167.5 92 81.5
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 6.3e-40 167.2 94 78.7
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 6.3e-40 167.2 94 78.7
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 6.3e-40 167.2 94 78.7
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 6.3e-40 167.2 93 78.5
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 8.3e-40 166.8 93 78.5
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 8.3e-40 166.8 94 78.7
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 8.3e-40 166.8 93 79.6
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 8.3e-40 166.8 93 78.5
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 8.3e-40 166.8 92 79.3
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 1.1e-39 166.4 93 81.7
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 1.1e-39 166.4 93 78.5
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 1.4e-39 166.0 93 80.6
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 1.4e-39 166.0 93 78.5
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 1.8e-39 165.6 93 79.6
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 1.8e-39 165.6 93 78.5
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 2.4e-39 165.2 93 77.4
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 2.4e-39 165.2 92 78.3
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 3.2e-39 164.9 93 76.3
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 3.2e-39 164.9 93 76.3
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 3.2e-39 164.9 93 78.5
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 3.2e-39 164.9 93 78.5
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 3.2e-39 164.9 93 77.4
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 5.4e-39 164.1 93 76.3
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 5.4e-39 164.1 93 78.5
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 5.4e-39 164.1 93 77.4
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 7.0e-39 163.7 93 77.4
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 7.0e-39 163.7 93 77.4
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 7.0e-39 163.7 93 77.4
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 9.2e-39 163.3 93 78.5
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 9.2e-39 163.3 93 79.6
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 9.2e-39 163.3 93 77.4
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 1.2e-38 162.9 93 76.3
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 1.2e-38 162.9 92 77.2
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 1.2e-38 162.9 93 76.3
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 2.0e-38 162.2 93 76.3
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 2.0e-38 162.2 93 75.3
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 2.0e-38 162.2 93 75.3
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 2.0e-38 162.2 93 80.6
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 2.7e-38 161.8 93 77.4
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 2.7e-38 161.8 93 76.3
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 3.5e-38 161.4 93 75.3
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 3.5e-38 161.4 93 76.3
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 4.5e-38 161.0 94 72.3
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 5.9e-38 160.6 93 74.2
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 5.9e-38 160.6 93 74.2
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 7.8e-38 160.2 93 77.4
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 7.8e-38 160.2 93 74.2
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 1.0e-37 159.8 93 77.4
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 1.3e-37 159.5 93 74.2
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 1.3e-37 159.5 94 73.4
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 1.7e-37 159.1 93 74.2
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 1.7e-37 159.1 94 74.5
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 1.7e-37 159.1 93 75.3
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 2.3e-37 158.7 92 76.1
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 2.9e-37 158.3 93 75.3
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 3.9e-37 157.9 93 74.2
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 1.9e-36 155.6 92 72.8
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 3.3e-36 154.8 95 71.6
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 4.3e-36 154.5 93 76.3
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 7.3e-36 153.7 113 63.7
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 1.6e-35 152.5 90 73.3
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 4.7e-35 151.0 92 69.6
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 8.0e-35 150.2 85 76.5
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 4.0e-34 147.9 91 71.4
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 5.2e-34 147.5 100 69.0
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 4.9e-32 141.0 90 66.7
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 2.4e-31 138.7 119 58.0
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 5.4e-31 137.5 89 68.5
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 2.0e-30 135.6 88 70.5
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 8.6e-29 130.2 78 75.6
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 8.6e-29 130.2 90 66.7
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 1.1e-28 129.8 72 80.6
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 1.1e-28 129.8 89 60.7
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 1.5e-28 129.4 73 80.8
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 4.3e-28 127.9 72 77.8
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 5.6e-28 127.5 73 78.1
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 7.3e-28 127.1 89 65.2
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 1.2e-27 126.3 72 77.8
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 2.8e-27 125.2 73 75.3
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 2.8e-27 125.2 74 73.0
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 8.9e-26 120.2 73 69.9
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 1.2e-25 119.8 71 74.6
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 1.5e-25 119.4 80 66.2
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 5.8e-25 117.5 70 72.9
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 3.7e-24 114.8 85 65.9
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 8.3e-24 113.6 74 73.0
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 1.9e-23 112.5 91 54.9
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 2.4e-23 112.1 93 59.1
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 5.4e-23 110.9 69 68.1
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 2.7e-22 108.6 71 63.4
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 1.7e-21 105.9 65 73.8
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 1.7e-21 105.9 65 73.8
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 8.6e-21 103.6 91 50.5
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 3.6e-19 98.2 92 54.3
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 3.1e-18 95.1 93 53.8
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 1.9e-15 85.9 46 80.4
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 2.4e-15 85.5 50 78.0
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 3.2e-15 85.1 74 56.8
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 4.1e-15 84.7 94 52.1
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 1.2e-14 83.2 103 42.7
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 5.6e-12 74.3 93 38.7
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 1.1e-10 70.1 43 74.4


User provided reference genes

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