Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0656900 Oryza sativa ssp. japonica HOM05D002584 ORTHO05D002736 0.0e+00 1368.2 778 100.0
Zm00001eb157960 Zea mays HOM05D002584 ORTHO05D002736 2.1e-24 118.6 121 52.1
PSO063G1767 Papaver somniferum HOM05D002584 ORTHO05D002736 3.6e-16 91.3 111 38.7
Ciclev10004699m.g Citrus clementina HOM05D002584 ORTHO05D002736 4.7e-16 90.9 112 43.8
MD07G1284800 Malus domestica HOM05D002584 ORTHO05D002736 6.1e-16 90.5 112 43.8
Haze_08671 Corylus avellana HOM05D002584 ORTHO05D002736 8.0e-16 90.1 115 40.0
QL09p010995 Quercus lobata HOM05D002584 ORTHO05D002736 1.0e-15 89.7 112 43.8
Sed0015947 Sechium edule HOM05D002584 ORTHO05D002736 1.8e-15 89.0 112 42.0
TAR375G0150 Trochodendron aralioides HOM05D002584 ORTHO05D002736 1.8e-15 89.0 112 42.0
Zm00001eb119710 Zea mays HOM05D002584 ORTHO05D002736 1.8e-15 89.0 121 41.3
Os01g0221300 Oryza sativa ssp. japonica HOM05D002584 ORTHO05D002736 4.0e-15 87.8 120 38.3
Actinidia34198 Actinidia chinensis HOM05D002584 ORTHO05D002736 5.2e-15 87.4 112 41.1
Lj1A1012T85 Lonicera japonica HOM05D002584 ORTHO05D002736 5.2e-15 87.4 112 42.0
Nn3g19082 Nelumbo nucifera HOM05D002584 ORTHO05D002736 5.2e-15 87.4 112 42.0
Potri.015G022500 Populus trichocarpa HOM05D002584 ORTHO05D002736 1.2e-14 86.3 112 41.1
MELO3C026935.2 Cucumis melo HOM05D002584 ORTHO05D002736 1.5e-14 85.9 112 42.0
ATR1093G048 Amborella trichopoda HOM05D002584 ORTHO05D002736 2.6e-14 85.1 295 27.5
Dinv28338 Davidia involucrata HOM05D002584 ORTHO05D002736 2.6e-14 85.1 112 42.0
ClCG05G008700 Citrullus lanatus HOM05D002584 ORTHO05D002736 3.4e-14 84.7 112 41.1
Haze_00109 Corylus avellana HOM05D002584 ORTHO05D002736 4.4e-14 84.3 112 41.1
Aqoxy7G01617 Aquilegia oxysepala HOM05D002584 ORTHO05D002736 7.5e-14 83.6 114 38.6
Cfa016361 Carpinus fangiana HOM05D002584 ORTHO05D002736 7.5e-14 83.6 112 42.0
Gorai.008G270900 Gossypium raimondii HOM05D002584 ORTHO05D002736 7.5e-14 83.6 118 39.0
Sabra15G0016800 Salix brachista HOM05D002584 ORTHO05D002736 7.5e-14 83.6 112 41.1
Cfa016360 Carpinus fangiana HOM05D002584 ORTHO05D002736 1.3e-13 82.8 112 41.1
Duzib205G0163 Durio zibethinus HOM05D002584 ORTHO05D002736 1.3e-13 82.8 118 37.3
Eucgr.K00328 Eucalyptus grandis HOM05D002584 ORTHO05D002736 1.7e-13 82.4 112 40.2
Phvul.009G137300 Phaseolus vulgaris HOM05D002584 ORTHO05D002736 1.7e-13 82.4 112 39.3
EL10Ac5g12881 Beta vulgaris HOM05D002584 ORTHO05D002736 2.2e-13 82.0 114 40.4
Gohir.A12G251900 Gossypium hirsutum HOM05D002584 ORTHO05D002736 2.2e-13 82.0 176 31.8
Haze_00110 Corylus avellana HOM05D002584 ORTHO05D002736 2.8e-13 81.6 112 41.1
Peaxi162Scf00904g00320 Petunia axillaris HOM05D002584 ORTHO05D002736 2.8e-13 81.6 118 38.1
CANSAT21G0945 Cannabis sativa HOM05D002584 ORTHO05D002736 3.7e-13 81.3 112 39.3
Dinv38860 Davidia involucrata HOM05D002584 ORTHO05D002736 3.7e-13 81.3 115 37.4
Atru.chr1.263 Acer truncatum HOM05D002584 ORTHO05D002736 4.8e-13 80.9 112 41.1
Cfa012844 Carpinus fangiana HOM05D002584 ORTHO05D002736 4.8e-13 80.9 106 40.6
PSO732G0710 Papaver somniferum HOM05D002584 ORTHO05D002736 4.8e-13 80.9 188 31.9
Sopen03g003380 Solanum pennellii HOM05D002584 ORTHO05D002736 4.8e-13 80.9 112 39.3
Thecc.03G192600 Theobroma cacao HOM05D002584 ORTHO05D002736 6.3e-13 80.5 118 36.4
Gohir.D12G252800 Gossypium hirsutum HOM05D002584 ORTHO05D002736 8.3e-13 80.1 118 38.1
Gohir.D12G253600 Gossypium hirsutum HOM05D002584 ORTHO05D002736 8.3e-13 80.1 118 38.1
Manes.01G045600 Manihot esculenta HOM05D002584 ORTHO05D002736 8.3e-13 80.1 147 33.3
Oeu060971.1 Olea europaea HOM05D002584 ORTHO05D002736 8.3e-13 80.1 114 37.7
PSO675G1890 Papaver somniferum HOM05D002584 ORTHO05D002736 8.3e-13 80.1 111 42.3
Solyc03g007420.3 Solanum lycopersicum HOM05D002584 ORTHO05D002736 8.3e-13 80.1 112 38.4
PGSC0003DMG400009100 Solanum tuberosum HOM05D002584 ORTHO05D002736 8.3e-13 80.1 112 38.4
CiPaw.05G257900 Carya illinoinensis HOM05D002584 ORTHO05D002736 1.1e-12 79.7 112 42.0
MD01G1215100 Malus domestica HOM05D002584 ORTHO05D002736 1.1e-12 79.7 112 41.1
Manes.06G157000 Manihot esculenta HOM05D002584 ORTHO05D002736 1.1e-12 79.7 294 25.9
PSO063G5339 Papaver somniferum HOM05D002584 ORTHO05D002736 1.1e-12 79.7 112 38.4
AUR62041778 Chenopodium quinoa HOM05D002584 ORTHO05D002736 1.4e-12 79.3 142 35.9
QL02p031474 Quercus lobata HOM05D002584 ORTHO05D002736 1.4e-12 79.3 115 36.5
RcHm_v2.0_Chr1g0380081 Rosa chinensis HOM05D002584 ORTHO05D002736 1.4e-12 79.3 112 40.2
vmacro06576 Vaccinium macrocarpon HOM05D002584 ORTHO05D002736 1.4e-12 79.3 119 37.0
VMungo1309G2151 Vigna mungo HOM05D002584 ORTHO05D002736 1.4e-12 79.3 112 38.4
Lj1g0015870 Lotus japonicus HOM05D002584 ORTHO05D002736 1.8e-12 79.0 112 37.5
PSO017G4509 Papaver somniferum HOM05D002584 ORTHO05D002736 1.8e-12 79.0 113 37.2
FAN01G3133 Fragaria x ananassa HOM05D002584 ORTHO05D002736 2.4e-12 78.6 112 40.2
MBI06_g22400_MAGBIO Magnolia biondii HOM05D002584 ORTHO05D002736 2.4e-12 78.6 123 33.3
PSO339G0177 Papaver somniferum HOM05D002584 ORTHO05D002736 2.4e-12 78.6 112 36.6
PSO591G0115 Papaver somniferum HOM05D002584 ORTHO05D002736 2.4e-12 78.6 111 39.6
MSTRG.8680 Avicennia marina HOM05D002584 ORTHO05D002736 3.1e-12 78.2 112 38.4
Dinv37552 Davidia involucrata HOM05D002584 ORTHO05D002736 3.1e-12 78.2 115 36.5
PSO170G2676 Papaver somniferum HOM05D002584 ORTHO05D002736 3.1e-12 78.2 136 33.8
Actinidia27338 Actinidia chinensis HOM05D002584 ORTHO05D002736 4.1e-12 77.8 112 37.5
AT5G53220 Arabidopsis thaliana HOM05D002584 ORTHO05D002736 4.1e-12 77.8 114 36.8
Lalb_Chr08g0240601 Lupinus albus HOM05D002584 ORTHO05D002736 4.1e-12 77.8 112 40.2
Prupe.2G307000 Prunus persica HOM05D002584 ORTHO05D002736 4.1e-12 77.8 112 39.3
Rhsim07G0084300 Rhododendron simsii HOM05D002584 ORTHO05D002736 4.1e-12 77.8 138 37.0
COL.COLO4_35658 Corchorus olitorius HOM05D002584 ORTHO05D002736 5.4e-12 77.4 148 35.8
Lsat_1_v5_gn_9_57421 Lactuca sativa HOM05D002584 ORTHO05D002736 5.4e-12 77.4 122 36.1
Nitab4.5_0000473g0110 Nicotiana tabacum HOM05D002584 ORTHO05D002736 5.4e-12 77.4 112 38.4
GSVIVG01028743001 Vitis vinifera HOM05D002584 ORTHO05D002736 5.4e-12 77.4 112 37.5
PSO675G5115 Papaver somniferum HOM05D002584 ORTHO05D002736 7.0e-12 77.0 188 31.4
Potri.014G039200 Populus trichocarpa HOM05D002584 ORTHO05D002736 7.0e-12 77.0 114 35.1
Hund04830 Selenicereus undatus HOM05D002584 ORTHO05D002736 7.0e-12 77.0 112 37.5
Migut.F00244 Erythranthe guttata HOM05D002584 ORTHO05D002736 9.1e-12 76.6 117 39.3
PSO832G1019 Papaver somniferum HOM05D002584 ORTHO05D002736 9.1e-12 76.6 112 39.3
HanXRQChr09g0253091 Helianthus annuus HOM05D002584 ORTHO05D002736 1.2e-11 76.3 117 35.0
Lj1g0020480 Lotus japonicus HOM05D002584 ORTHO05D002736 1.2e-11 76.3 112 37.5
PGR142G0759 Punica granatum HOM05D002584 ORTHO05D002736 1.2e-11 76.3 115 37.4
Rhsim03G0198700 Rhododendron simsii HOM05D002584 ORTHO05D002736 1.2e-11 76.3 118 36.4
Sabra14G0028500 Salix brachista HOM05D002584 ORTHO05D002736 1.2e-11 76.3 113 34.5
Atru.chr9.2048 Acer truncatum HOM05D002584 ORTHO05D002736 1.6e-11 75.9 118 36.4
Nitab4.5_0002589g0030 Nicotiana tabacum HOM05D002584 ORTHO05D002736 1.6e-11 75.9 112 37.5
CARHR266290 Cardamine hirsuta HOM05D002584 ORTHO05D002736 2.0e-11 75.5 138 34.8
ECA232G0187 Erigeron canadensis HOM05D002584 ORTHO05D002736 2.0e-11 75.5 115 35.7
PSO675G6667 Papaver somniferum HOM05D002584 ORTHO05D002736 2.0e-11 75.5 112 39.3
HanXRQChr09g0253061 Helianthus annuus HOM05D002584 ORTHO05D002736 2.7e-11 75.1 112 34.8
EL10Ac3g05348 Beta vulgaris HOM05D002584 ORTHO05D002736 4.5e-11 74.3 112 37.5
PSO017G5210 Papaver somniferum HOM05D002584 ORTHO05D002736 4.5e-11 74.3 112 38.4
PSO591G0137 Papaver somniferum HOM05D002584 ORTHO05D002736 4.5e-11 74.3 112 37.5
TWI14G1284 Tripterygium wilfordii HOM05D002584 ORTHO05D002736 4.5e-11 74.3 113 37.2
PSO478G0802 Papaver somniferum HOM05D002584 ORTHO05D002736 5.9e-11 73.9 112 38.4
Actinidia08626 Actinidia chinensis HOM05D002584 ORTHO05D002736 7.7e-11 73.6 103 37.9
Ciclev10019635m.g Citrus clementina HOM05D002584 ORTHO05D002736 7.7e-11 73.6 129 33.3
Aa31LG3G2620 Aethionema arabicum HOM05D002584 ORTHO05D002736 1.0e-10 73.2 112 39.3
PSO675G1901 Papaver somniferum HOM05D002584 ORTHO05D002736 1.0e-10 73.2 111 38.7
SGA_v2.0_scaffold192G40581 Striga asiatica HOM05D002584 ORTHO05D002736 1.0e-10 73.2 216 27.8
AUR62019335 Chenopodium quinoa HOM05D002584 ORTHO05D002736 1.3e-10 72.8 112 36.6
Thhalv10013960m.g Eutrema salsugineum HOM05D002584 ORTHO05D002736 1.3e-10 72.8 114 37.7
HanXRQChr09g0253081 Helianthus annuus HOM05D002584 ORTHO05D002736 1.7e-10 72.4 115 37.4
arahy.Tifrunner.gnm1.ann1.PZ4M2K Arachis hypogaea HOM05D002584 ORTHO05D002736 2.3e-10 72.0 112 37.5
PSO675G0694 Papaver somniferum HOM05D002584 ORTHO05D002736 2.3e-10 72.0 111 37.8
A03p15280 Brassica napus HOM05D002584 ORTHO05D002736 3.8e-10 71.2 118 33.1
BraA03t10821Z Brassica rapa HOM05D002584 ORTHO05D002736 3.8e-10 71.2 118 33.1
SalBow4G3348 Salvia bowleyana HOM05D002584 ORTHO05D002736 3.8e-10 71.2 112 35.7
ClCG07G014870 Citrullus lanatus HOM05D002584 ORTHO05D002736 5.0e-10 70.9 114 35.1
Medtr1g028880 Medicago truncatula HOM05D002584 ORTHO05D002736 5.0e-10 70.9 117 35.0
PSO732G0573 Papaver somniferum HOM05D002584 ORTHO05D002736 5.0e-10 70.9 111 36.9
Hund11407 Selenicereus undatus HOM05D002584 ORTHO05D002736 6.6e-10 70.5 117 35.0
AUR62019803 Chenopodium quinoa HOM05D002584 ORTHO05D002736 1.1e-09 69.7 246 29.3
PSO210G0413 Papaver somniferum HOM05D002584 ORTHO05D002736 1.1e-09 69.7 119 32.8
FAN10G3352 Fragaria x ananassa HOM05D002584 ORTHO05D002736 1.5e-09 69.3 126 36.5
FAN10G3419 Fragaria x ananassa HOM05D002584 ORTHO05D002736 1.5e-09 69.3 126 36.5
Actinidia22714 Actinidia chinensis HOM05D002584 ORTHO05D002736 3.3e-09 68.2 112 33.9
AL8G27880 Arabidopsis lyrata HOM05D002584 ORTHO05D002736 3.3e-09 68.2 255 27.1
BcaC01g06231 Brassica carinata HOM05D002584 ORTHO05D002736 4.2e-09 67.8 118 33.1
C03p17860 Brassica napus HOM05D002584 ORTHO05D002736 4.2e-09 67.8 118 33.1
BolC3t14193H Brassica oleracea HOM05D002584 ORTHO05D002736 4.2e-09 67.8 118 33.1
Eucgr.E00841 Eucalyptus grandis HOM05D002584 ORTHO05D002736 4.2e-09 67.8 111 35.1
PSO421G0489 Papaver somniferum HOM05D002584 ORTHO05D002736 4.2e-09 67.8 115 36.5
Sed0024155 Sechium edule HOM05D002584 ORTHO05D002736 4.2e-09 67.8 134 31.3
Sp6g15400 Schrenkiella parvula HOM05D002584 ORTHO05D002736 7.2e-09 67.0 118 34.7
MELO3C016311.2 Cucumis melo HOM05D002584 ORTHO05D002736 9.5e-09 66.6 114 33.3
CsaV3_4G006400 Cucumis sativus L. HOM05D002584 ORTHO05D002736 9.5e-09 66.6 114 33.3
Sed0013734 Sechium edule HOM05D002584 ORTHO05D002736 1.2e-08 66.2 147 29.9
Medtr1g028620 Medicago truncatula HOM05D002584 ORTHO05D002736 3.6e-08 64.7 116 33.6
BcaB01g04236 Brassica carinata HOM05D002584 ORTHO05D002736 6.1e-08 63.9 112 33.9
Cc08_g15750 Coffea canephora HOM05D002584 ORTHO05D002736 6.1e-08 63.9 223 25.6
FvH4_7g31000 Fragaria vesca HOM05D002584 ORTHO05D002736 6.1e-08 63.9 480 22.7
FAN06G1680 Fragaria x ananassa HOM05D002584 ORTHO05D002736 6.1e-08 63.9 480 22.7
PSO675G6647 Papaver somniferum HOM05D002584 ORTHO05D002736 6.1e-08 63.9 111 33.3
PSO732G0732 Papaver somniferum HOM05D002584 ORTHO05D002736 6.1e-08 63.9 111 33.3
Cc02_g01900 Coffea canephora HOM05D002584 ORTHO05D002736 1.0e-07 63.2 116 33.6
PSO063G5830 Papaver somniferum HOM05D002584 ORTHO05D002736 1.0e-07 63.2 146 31.5
DCAR_005024 Daucus carota HOM05D002584 ORTHO05D002736 1.4e-07 62.8 105 33.3
PSO782G5749 Papaver somniferum HOM05D002584 ORTHO05D002736 1.4e-07 62.8 146 31.5
TPR.G33314 Trifolium pratense HOM05D002584 ORTHO05D002736 1.4e-07 62.8 114 30.7
FAN06G3312 Fragaria x ananassa HOM05D002584 ORTHO05D002736 1.8e-07 62.4 480 22.5
PSO017G1735 Papaver somniferum HOM05D002584 ORTHO05D002736 2.3e-07 62.0 111 34.2
Ah.07g206030 Amaranthus hybridus HOM05D002584 ORTHO05D002736 5.2e-07 60.8 111 33.3
AUR62006155 Chenopodium quinoa HOM05D002584 ORTHO05D002736 5.2e-07 60.8 120 33.3
FAN03G2222 Fragaria x ananassa HOM05D002584 ORTHO05D002736 6.8e-07 60.5 111 36.0
Migut.E01233 Erythranthe guttata HOM05D002584 ORTHO05D002736 8.9e-07 60.1 115 29.6
PSO832G3317 Papaver somniferum HOM05D002584 ORTHO05D002736 2.0e-06 58.9 111 31.5
PSO832G4482 Papaver somniferum HOM05D002584 ORTHO05D002736 2.0e-06 58.9 111 32.4
ECA246G0735 Erigeron canadensis HOM05D002584 ORTHO05D002736 7.5e-06 57.0 111 34.2
Lsat_1_v5_gn_9_57361 Lactuca sativa HOM05D002584 ORTHO05D002736 7.5e-06 57.0 60 41.7
PSO764G0213 Papaver somniferum HOM05D002584 ORTHO05D002736 7.5e-06 57.0 111 32.4
Sc18g0004840 Simmondsia chinensis HOM05D002584 ORTHO05D002736 9.8e-06 56.6 68 38.2


User provided reference genes

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