Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0654300 Oryza sativa ssp. japonica HOM05D002764 ORTHO05D002960 9.9e-29 129.4 65 100.0
Zm00001eb116800 Zea mays HOM05D002764 ORTHO05D002960 1.8e-25 118.6 64 90.6
Eucgr.E04332 Eucalyptus grandis HOM05D002764 ORTHO05D002960 6.5e-20 100.1 59 84.7
PGR042G3469 Punica granatum HOM05D002764 ORTHO05D002960 8.4e-20 99.8 59 83.1
GSVIVG01011697001 Vitis vinifera HOM05D002764 ORTHO05D002960 2.5e-19 98.2 59 84.7
CiPaw.09G141200 Carya illinoinensis HOM05D002764 ORTHO05D002960 7.1e-19 96.7 60 81.7
EL10Ac6g13754 Beta vulgaris HOM05D002764 ORTHO05D002960 9.3e-19 96.3 61 78.7
Ciclev10015913m.g Citrus clementina HOM05D002764 ORTHO05D002960 9.3e-19 96.3 61 77.0
Dinv05281 Davidia involucrata HOM05D002764 ORTHO05D002960 9.3e-19 96.3 59 81.4
Lj4g0007006 Lotus japonicus HOM05D002764 ORTHO05D002960 9.3e-19 96.3 61 80.3
QL11p010620 Quercus lobata HOM05D002764 ORTHO05D002960 1.2e-18 95.9 60 80.0
TAR627G0266 Trochodendron aralioides HOM05D002764 ORTHO05D002960 1.2e-18 95.9 59 81.4
AUR62026563 Chenopodium quinoa HOM05D002764 ORTHO05D002960 1.6e-18 95.5 60 80.0
PSO063G4440 Papaver somniferum HOM05D002764 ORTHO05D002960 2.7e-18 94.7 59 81.4
CSS0002485 Camellia sinensis var. sinensis HOM05D002764 ORTHO05D002960 3.5e-18 94.4 59 79.7
Manes.16G060600 Manihot esculenta HOM05D002764 ORTHO05D002960 4.6e-18 94.0 59 79.7
PSO782G1036 Papaver somniferum HOM05D002764 ORTHO05D002960 4.6e-18 94.0 59 81.4
Potri.001G073300 Populus trichocarpa HOM05D002764 ORTHO05D002960 6.0e-18 93.6 60 78.3
Thecc.02G000300 Theobroma cacao HOM05D002764 ORTHO05D002960 7.9e-18 93.2 59 78.0
Duzib248G0661 Durio zibethinus HOM05D002764 ORTHO05D002960 1.0e-17 92.8 61 75.4
Potri.003G157700 Populus trichocarpa HOM05D002764 ORTHO05D002960 1.0e-17 92.8 59 78.0
ATR0737G018 Amborella trichopoda HOM05D002764 ORTHO05D002960 1.3e-17 92.4 56 80.4
MSTRG.28023 Avicennia marina HOM05D002764 ORTHO05D002960 1.8e-17 92.0 61 73.8
Cfa001171 Carpinus fangiana HOM05D002764 ORTHO05D002960 1.8e-17 92.0 61 80.3
Psat4g112480 Pisum sativum HOM05D002764 ORTHO05D002960 1.8e-17 92.0 61 75.4
Sc25g0004730 Simmondsia chinensis HOM05D002764 ORTHO05D002960 1.8e-17 92.0 61 77.0
SGA_v2.0_scaffold263G46025 Striga asiatica HOM05D002764 ORTHO05D002960 1.8e-17 92.0 62 77.4
Sabra01G0051700 Salix brachista HOM05D002764 ORTHO05D002960 2.3e-17 91.7 59 78.0
Glyma.08G264402 Glycine max HOM05D002764 ORTHO05D002960 3.0e-17 91.3 59 78.0
Phvul.003G274500 Phaseolus vulgaris HOM05D002764 ORTHO05D002960 3.0e-17 91.3 61 75.4
TPR.G19832 Trifolium pratense HOM05D002764 ORTHO05D002960 3.0e-17 91.3 61 75.4
ATR0721G170 Amborella trichopoda HOM05D002764 ORTHO05D002960 3.9e-17 90.9 56 78.6
Aqoxy2G00386 Aquilegia oxysepala HOM05D002764 ORTHO05D002960 3.9e-17 90.9 61 75.4
Glyma.16G094500 Glycine max HOM05D002764 ORTHO05D002960 3.9e-17 90.9 61 75.4
vmacro03577 Vaccinium macrocarpon HOM05D002764 ORTHO05D002960 3.9e-17 90.9 57 78.9
VMungo0251G1067 Vigna mungo HOM05D002764 ORTHO05D002960 3.9e-17 90.9 61 75.4
Cc09_g04490 Coffea canephora HOM05D002764 ORTHO05D002960 5.1e-17 90.5 61 75.4
Hma1.2p1_0082F.1_g042610 Hydrangea macrophylla HOM05D002764 ORTHO05D002960 5.1e-17 90.5 59 76.3
Lalb_Chr16g0391871 Lupinus albus HOM05D002764 ORTHO05D002960 5.1e-17 90.5 62 77.4
Medtr8g070640 Medicago truncatula HOM05D002764 ORTHO05D002960 6.7e-17 90.1 59 76.3
CsaV3_6G053200 Cucumis sativus L. HOM05D002764 ORTHO05D002960 8.7e-17 89.7 64 73.4
DCAR_007770 Daucus carota HOM05D002764 ORTHO05D002960 8.7e-17 89.7 62 72.6
CANSAT35G1062 Cannabis sativa HOM05D002764 ORTHO05D002960 1.1e-16 89.4 60 78.3
Peaxi162Scf00040g00214 Petunia axillaris HOM05D002764 ORTHO05D002960 1.1e-16 89.4 64 71.9
Prupe.4G123300 Prunus persica HOM05D002764 ORTHO05D002960 1.1e-16 89.4 59 76.3
Sed0003310 Sechium edule HOM05D002764 ORTHO05D002960 1.1e-16 89.4 57 77.2
CDE10G0875 Ceratophyllum demersum HOM05D002764 ORTHO05D002960 1.5e-16 89.0 59 76.3
CDE10G1113 Ceratophyllum demersum HOM05D002764 ORTHO05D002960 1.5e-16 89.0 59 76.3
Nitab4.5_0004266g0020 Nicotiana tabacum HOM05D002764 ORTHO05D002960 1.5e-16 89.0 64 71.9
Nitab4.5_0006120g0020 Nicotiana tabacum HOM05D002764 ORTHO05D002960 1.5e-16 89.0 64 71.9
Solyc11g068610.2 Solanum lycopersicum HOM05D002764 ORTHO05D002960 1.5e-16 89.0 64 73.4
PGSC0003DMG400026351 Solanum tuberosum HOM05D002764 ORTHO05D002960 1.5e-16 89.0 64 73.4
CAN.G745.4 Capsicum annuum HOM05D002764 ORTHO05D002960 1.9e-16 88.6 64 71.9
TWI38G0493 Tripterygium wilfordii HOM05D002764 ORTHO05D002960 1.9e-16 88.6 56 76.8
THA.LOC104798576 Tarenaya hassleriana HOM05D002764 ORTHO05D002960 2.5e-16 88.2 61 78.7
Sopen11g027330 Solanum pennellii HOM05D002764 ORTHO05D002960 3.3e-16 87.8 64 71.9
DCAR_004367 Daucus carota HOM05D002764 ORTHO05D002960 4.3e-16 87.4 63 66.7
SEGI_18231 Sequoiadendron giganteum HOM05D002764 ORTHO05D002960 4.3e-16 87.4 56 75.0
Nn1g09845 Nelumbo nucifera HOM05D002764 ORTHO05D002960 7.4e-16 86.7 61 70.5
HPP92_005201 Vanilla planifolia HOM05D002764 ORTHO05D002960 7.4e-16 86.7 65 72.3
Gohir.D12G049400 Gossypium hirsutum HOM05D002764 ORTHO05D002960 1.3e-15 85.9 61 70.5
Gorai.008G052300 Gossypium raimondii HOM05D002764 ORTHO05D002960 1.3e-15 85.9 61 70.5
TWI15G1089 Tripterygium wilfordii HOM05D002764 ORTHO05D002960 1.6e-15 85.5 55 74.5
MD10G1221300 Malus domestica HOM05D002764 ORTHO05D002960 2.1e-15 85.1 57 75.4
arahy.Tifrunner.gnm1.ann1.MDM23I Arachis hypogaea HOM05D002764 ORTHO05D002960 2.8e-15 84.7 57 77.2
THA.LOC104814331 Tarenaya hassleriana HOM05D002764 ORTHO05D002960 3.7e-15 84.3 61 75.4
SalBow4G2049 Salvia bowleyana HOM05D002764 ORTHO05D002960 4.8e-15 84.0 92 53.3
SalBow4G2392 Salvia bowleyana HOM05D002764 ORTHO05D002960 4.8e-15 84.0 92 53.3
FvH4_3g13510 Fragaria vesca HOM05D002764 ORTHO05D002960 6.3e-15 83.6 65 69.2
RcHm_v2.0_Chr5g0022461 Rosa chinensis HOM05D002764 ORTHO05D002960 6.3e-15 83.6 65 69.2
Aa31LG6G12060 Aethionema arabicum HOM05D002764 ORTHO05D002960 8.2e-15 83.2 61 72.1
BcaB03g13812 Brassica carinata HOM05D002764 ORTHO05D002960 8.2e-15 83.2 61 72.1
BcaB07g32735 Brassica carinata HOM05D002764 ORTHO05D002960 8.2e-15 83.2 61 72.1
BcaC05g27107 Brassica carinata HOM05D002764 ORTHO05D002960 8.2e-15 83.2 61 72.1
A09p35450 Brassica napus HOM05D002764 ORTHO05D002960 8.2e-15 83.2 61 72.1
C05p29900 Brassica napus HOM05D002764 ORTHO05D002960 8.2e-15 83.2 61 72.1
BolC7t41980H Brassica oleracea HOM05D002764 ORTHO05D002960 8.2e-15 83.2 61 72.1
BraA07t28755Z Brassica rapa HOM05D002764 ORTHO05D002960 8.2e-15 83.2 61 72.1
BraA09t39073Z Brassica rapa HOM05D002764 ORTHO05D002960 8.2e-15 83.2 61 72.1
ECA232G3093 Erigeron canadensis HOM05D000029 ORTHO05D000001 8.2e-15 83.2 61 70.5
HanXRQChr09g0257691 Helianthus annuus HOM05D002764 ORTHO05D002960 8.2e-15 83.2 59 72.9
Lsat_1_v5_gn_8_107580 Lactuca sativa HOM05D002764 ORTHO05D002960 8.2e-15 83.2 64 71.9
Mapoly0019s0138 Marchantia polymorpha HOM05D002764 ORTHO05D002960 8.2e-15 83.2 55 72.7
Sp1g26720 Schrenkiella parvula HOM05D002764 ORTHO05D002960 8.2e-15 83.2 61 72.1
FAN11G2045 Fragaria x ananassa HOM05D002764 ORTHO05D002960 1.4e-14 82.4 65 67.7
Thhalv10008211m.g Eutrema salsugineum HOM05D002764 ORTHO05D002960 1.8e-14 82.0 61 70.5
Pp3c14_19930 Physcomitrium patens HOM05D002764 ORTHO05D002960 2.4e-14 81.6 56 69.6
FAN21G1338 Fragaria x ananassa HOM05D002764 ORTHO05D002960 3.1e-14 81.3 65 67.7
FAN16G2462 Fragaria x ananassa HOM05D002764 ORTHO05D002960 4.1e-14 80.9 60 70.0
BolC5t31722H Brassica oleracea HOM05D002764 ORTHO05D002960 5.3e-14 80.5 61 70.5
CARHR030300 Cardamine hirsuta HOM05D002764 ORTHO05D002960 6.9e-14 80.1 61 72.1
Migut.N01903 Erythranthe guttata HOM05D002764 ORTHO05D002960 6.9e-14 80.1 64 67.2
A07p09600 Brassica napus HOM05D002764 ORTHO05D002960 1.2e-13 79.3 57 73.7
C07p14780 Brassica napus HOM05D002764 ORTHO05D002960 1.2e-13 79.3 57 73.7
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 1.2e-13 79.3 64 60.9
AL1G45080 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 1.5e-13 79.0 60 71.7
AT1G30825 Arabidopsis thaliana HOM05D002764 ORTHO05D002960 1.5e-13 79.0 60 71.7
Carub.0001s2914 Capsella rubella HOM05D002764 ORTHO05D002960 1.5e-13 79.0 61 70.5
Rhsim13G0136800 Rhododendron simsii HOM05D002764 ORTHO05D002960 1.5e-13 79.0 85 54.1
Ah.03g132240 Amaranthus hybridus HOM05D002764 ORTHO05D002960 2.0e-13 78.6 59 71.2
AagrBONN_evm.TU.Sc2ySwM_344.4310 Anthoceros agrestis HOM05D002764 ORTHO05D002960 2.9e-12 74.7 60 61.7
COL.COLO4_25012 Corchorus olitorius HOM05D002764 ORTHO05D002960 2.9e-12 74.7 48 79.2
AagrBONN_evm.TU.Sc2ySwM_362.1937 Anthoceros agrestis HOM05D002764 ORTHO05D002960 6.5e-12 73.6 60 63.3
Pp3c1_32330 Physcomitrium patens HOM05D002764 ORTHO05D002960 8.4e-12 73.2 56 58.9
ClCG01G025980 Citrullus lanatus HOM05D002764 ORTHO05D002960 7.2e-11 70.1 52 69.2
arahy.Tifrunner.gnm1.ann1.VK0W6N Arachis hypogaea HOM05D002764 ORTHO05D002960 1.3e-09 65.9 33 90.9
SHI16745 Sapria himalayana HOM05D002764 ORTHO05D002960 8.7e-09 63.2 33 84.8
FAN25G1120 Fragaria x ananassa HOM05D002764 ORTHO05D002960 2.5e-08 61.6 32 84.4
SEGI_02118 Sequoiadendron giganteum HOM05D002764 ORTHO05D002960 4.3e-08 60.8 44 63.6
SMO118G0168 Selaginella moellendorffii HOM05D002764 ORTHO05D002960 1.3e-07 59.3 33 78.8
Cfa014772 Carpinus fangiana HOM05D002764 ORTHO05D002960 1.6e-07 58.9 55 47.3
CBR_g9158 Chara braunii HOM05D002764 ORTHO05D002960 1.6e-07 58.9 33 78.8
ATR0736G098 Amborella trichopoda HOM05D002764 ORTHO05D002960 8.2e-07 56.6 57 45.6
QL06p020725 Quercus lobata HOM05D002764 ORTHO05D002960 1.4e-06 55.8 44 52.3
Gohir.A09G228000 Gossypium hirsutum HOM05D002764 ORTHO05D002960 2.4e-06 55.1 48 45.8
Gohir.D09G229000 Gossypium hirsutum HOM05D002764 ORTHO05D002960 3.1e-06 54.7 48 45.8
GSVIVG01027900001 Vitis vinifera HOM05D002764 ORTHO05D002960 5.3e-06 53.9 51 47.1
Gorai.006G251700 Gossypium raimondii HOM05D002764 ORTHO05D002960 6.9e-06 53.5 48 45.8
Rhsim02G0042900 Rhododendron simsii HOM05D002764 ORTHO05D002960 6.9e-06 53.5 56 46.4
vmacro15471 Vaccinium macrocarpon HOM05D002764 ORTHO05D002960 6.9e-06 53.5 51 49.0


User provided reference genes

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