Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0653350 Oryza sativa ssp. japonica HOM05D003313 ORTHO05D004217 2.6e-116 422.2 230 100.0
Os01g0653800 Oryza sativa ssp. japonica HOM05D003313 ORTHO05D004217 6.6e-19 98.6 53 98.1
Zm00001eb359400 Zea mays HOM05D003313 ORTHO05D004217 2.2e-14 83.6 53 81.1
Zm00001eb158110 Zea mays HOM05D003313 ORTHO05D004217 2.9e-14 83.2 53 81.1
COL.COLO4_07112 Corchorus olitorius HOM05D003313 ORTHO05D004217 8.4e-14 81.6 57 70.2
CANSAT01G1610 Cannabis sativa HOM05D003313 ORTHO05D004217 1.4e-13 80.9 53 77.4
Lj1g0026129 Lotus japonicus HOM05D003313 ORTHO05D004217 1.9e-13 80.5 53 77.4
Aqoxy1G01346 Aquilegia oxysepala HOM05D003313 ORTHO05D004217 2.4e-13 80.1 53 75.5
TPR.G8371 Trifolium pratense HOM05D003313 ORTHO05D004217 2.4e-13 80.1 53 77.4
Duzib150G0949 Durio zibethinus HOM05D003313 ORTHO05D004217 3.2e-13 79.7 53 75.5
DCAR_029787 Daucus carota HOM05D003313 ORTHO05D004217 5.4e-13 79.0 53 75.5
Nn3g20244 Nelumbo nucifera HOM05D003313 ORTHO05D004217 5.4e-13 79.0 53 73.6
Ca_09260_v3 Cicer arietinum L. HOM05D003313 ORTHO05D004217 7.1e-13 78.6 53 73.6
Dinv30970 Davidia involucrata HOM05D003313 ORTHO05D004217 7.1e-13 78.6 53 73.6
MD10G1148800 Malus domestica HOM05D003313 ORTHO05D004217 7.1e-13 78.6 64 64.1
Manes.11G105500 Manihot esculenta HOM05D003313 ORTHO05D004217 7.1e-13 78.6 53 73.6
GSVIVG01029823001 Vitis vinifera HOM05D003313 ORTHO05D004217 9.3e-13 78.2 53 71.7
arahy.Tifrunner.gnm1.ann1.9JB77L Arachis hypogaea HOM05D003313 ORTHO05D004217 1.2e-12 77.8 53 73.6
arahy.Tifrunner.gnm1.ann1.XWZQ7T Arachis hypogaea HOM05D003313 ORTHO05D004217 1.2e-12 77.8 53 73.6
Gorai.004G096900 Gossypium raimondii HOM05D003313 ORTHO05D004217 1.2e-12 77.8 53 71.7
Medtr7g111080 Medicago truncatula HOM05D003313 ORTHO05D004217 1.6e-12 77.4 53 73.6
Thecc.09G202800 Theobroma cacao HOM05D003313 ORTHO05D004217 1.6e-12 77.4 53 71.7
Atru.chr3.2031 Acer truncatum HOM05D003313 ORTHO05D004217 2.1e-12 77.0 53 71.7
MBI07_g10943_MAGBIO Magnolia biondii HOM05D003313 ORTHO05D004217 2.1e-12 77.0 53 71.7
MD05G1154700 Malus domestica HOM05D003313 ORTHO05D004217 2.1e-12 77.0 64 62.5
PSO541G4460 Papaver somniferum HOM05D003313 ORTHO05D004217 2.1e-12 77.0 53 69.8
PSO675G1011 Papaver somniferum HOM05D003313 ORTHO05D004217 2.1e-12 77.0 53 69.8
Potri.006G081800 Populus trichocarpa HOM05D003313 ORTHO05D004217 2.1e-12 77.0 53 73.6
Eucgr.B01361 Eucalyptus grandis HOM05D003313 ORTHO05D004217 2.7e-12 76.6 64 64.1
QL11p018449 Quercus lobata HOM05D003313 ORTHO05D004217 2.7e-12 76.6 53 71.7
Rhsim11G0111700 Rhododendron simsii HOM05D003313 ORTHO05D004217 2.7e-12 76.6 53 71.7
CSS0016348 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 3.5e-12 76.3 53 73.6
CSS0044155 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 3.5e-12 76.3 53 73.6
Gohir.D08G091400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 3.5e-12 76.3 52 71.2
Prupe.8G187800 Prunus persica HOM05D003313 ORTHO05D004217 3.5e-12 76.3 64 62.5
RcHm_v2.0_Chr6g0282501 Rosa chinensis HOM05D003313 ORTHO05D004217 3.5e-12 76.3 64 62.5
ClCG09G008380 Citrullus lanatus HOM05D003313 ORTHO05D004217 4.6e-12 75.9 58 63.8
Gohir.D08G026400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 4.6e-12 75.9 53 73.6
Gorai.004G022900 Gossypium raimondii HOM05D003313 ORTHO05D004217 4.6e-12 75.9 53 73.6
Lalb_Chr15g0077831 Lupinus albus HOM05D003313 ORTHO05D004217 6.0e-12 75.5 63 63.5
Sabra06G0061800 Salix brachista HOM05D003313 ORTHO05D004217 6.0e-12 75.5 53 71.7
TAR624G0023 Trochodendron aralioides HOM05D003313 ORTHO05D004217 6.0e-12 75.5 53 69.8
TAR624G1107 Trochodendron aralioides HOM05D003313 ORTHO05D004217 6.0e-12 75.5 53 69.8
Lsat_1_v5_gn_7_68120 Lactuca sativa HOM05D003313 ORTHO05D004217 7.9e-12 75.1 53 71.7
Sed0021054 Sechium edule HOM05D003313 ORTHO05D004217 7.9e-12 75.1 53 69.8
EL10Ac3g07331 Beta vulgaris HOM05D003313 ORTHO05D004217 1.0e-11 74.7 53 67.9
MELO3C021123.2 Cucumis melo HOM05D003313 ORTHO05D004217 1.0e-11 74.7 53 67.9
Gohir.A08G082000 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.3e-11 74.3 53 67.9
Nitab4.5_0000399g0070 Nicotiana tabacum HOM05D003313 ORTHO05D004217 1.3e-11 74.3 53 69.8
Nitab4.5_0004090g0090 Nicotiana tabacum HOM05D003313 ORTHO05D004217 1.3e-11 74.3 53 69.8
Psat3g015640 Pisum sativum HOM05D003313 ORTHO05D004217 1.3e-11 74.3 53 67.9
ATR0620G130 Amborella trichopoda HOM05D003313 ORTHO05D004217 1.8e-11 73.9 64 60.9
Cc02_g36830 Coffea canephora HOM05D003313 ORTHO05D004217 1.8e-11 73.9 64 59.4
Gohir.A08G016300 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.8e-11 73.9 53 71.7
Lj5C312G5 Lonicera japonica HOM05D003313 ORTHO05D004217 1.8e-11 73.9 53 67.9
Oeu016865.1 Olea europaea HOM05D003313 ORTHO05D004217 1.8e-11 73.9 54 66.7
Cfa004406 Carpinus fangiana HOM05D003313 ORTHO05D004217 2.3e-11 73.6 53 67.9
CAN.G1379.33 Capsicum annuum HOM05D003313 ORTHO05D004217 3.0e-11 73.2 53 69.8
CsaV3_7G026710 Cucumis sativus L. HOM05D003313 ORTHO05D004217 3.0e-11 73.2 53 66.0
FvH4_2g17560 Fragaria vesca HOM05D003313 ORTHO05D004217 3.0e-11 73.2 64 60.9
FAN15G1274 Fragaria x ananassa HOM05D003313 ORTHO05D004217 3.0e-11 73.2 64 60.9
FAN27G0645 Fragaria x ananassa HOM05D003313 ORTHO05D004217 3.0e-11 73.2 64 60.9
FAN27G0740 Fragaria x ananassa HOM05D003313 ORTHO05D004217 3.0e-11 73.2 64 60.9
HanXRQChr15g0468281 Helianthus annuus HOM05D003313 ORTHO05D004217 3.0e-11 73.2 64 60.9
Peaxi162Scf00194g00629 Petunia axillaris HOM05D003313 ORTHO05D004217 3.0e-11 73.2 53 69.8
vmacro01644 Vaccinium macrocarpon HOM05D003313 ORTHO05D004217 3.0e-11 73.2 53 67.9
ATR0620G123 Amborella trichopoda HOM05D003313 ORTHO05D004217 3.9e-11 72.8 64 59.4
A09p06410 Brassica napus HOM05D003313 ORTHO05D004217 3.9e-11 72.8 53 69.8
C09p07140 Brassica napus HOM05D003313 ORTHO05D004217 3.9e-11 72.8 53 69.8
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 3.9e-11 72.8 53 69.8
BraA09t36285Z Brassica rapa HOM05D003313 ORTHO05D004217 3.9e-11 72.8 53 69.8
ECA240G0535 Erigeron canadensis HOM05D003313 ORTHO05D004217 3.9e-11 72.8 53 69.8
Phvul.001G220300 Phaseolus vulgaris HOM05D003313 ORTHO05D004217 3.9e-11 72.8 53 66.0
Actinidia17722 Actinidia chinensis HOM05D003313 ORTHO05D004217 5.1e-11 72.4 53 66.0
BcaC04g23548 Brassica carinata HOM05D003313 ORTHO05D004217 5.1e-11 72.4 53 69.8
Hund24556 Selenicereus undatus HOM05D003313 ORTHO05D004217 5.1e-11 72.4 53 66.0
Sc10g0005440 Simmondsia chinensis HOM05D003313 ORTHO05D004217 5.1e-11 72.4 54 66.7
Sc10g0006280 Simmondsia chinensis HOM05D003313 ORTHO05D004217 5.1e-11 72.4 54 66.7
Solyc01g102510.4 Solanum lycopersicum HOM05D003313 ORTHO05D004217 5.1e-11 72.4 53 69.8
TWI38G1822 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 5.1e-11 72.4 64 57.8
AUR62018429 Chenopodium quinoa HOM05D003313 ORTHO05D004217 8.7e-11 71.6 53 62.3
AUR62021005 Chenopodium quinoa HOM05D003313 ORTHO05D004217 8.7e-11 71.6 53 62.3
Lalb_Chr18g0046271 Lupinus albus HOM05D003313 ORTHO05D004217 8.7e-11 71.6 63 60.3
THA.LOC104814960 Tarenaya hassleriana HOM05D003313 ORTHO05D004217 8.7e-11 71.6 64 60.9
HPP92_021469 Vanilla planifolia HOM05D003313 ORTHO05D004217 8.7e-11 71.6 64 56.2
VMungo1383G1216 Vigna mungo HOM05D003313 ORTHO05D004217 8.7e-11 71.6 53 67.9
AT5G24710 Arabidopsis thaliana HOM05D003313 ORTHO05D004217 1.1e-10 71.2 53 67.9
MSTRG.27897 Avicennia marina HOM05D003313 ORTHO05D004217 1.1e-10 71.2 53 66.0
CiPaw.01G000400 Carya illinoinensis HOM05D003313 ORTHO05D004217 1.1e-10 71.2 53 66.0
Haze_14998 Corylus avellana HOM05D003313 ORTHO05D004217 1.1e-10 71.2 52 67.3
Glyma.03G226400 Glycine max HOM05D003313 ORTHO05D004217 1.1e-10 71.2 53 69.8
SGA_v2.0_scaffold311G48230 Striga asiatica HOM05D003313 ORTHO05D004217 1.1e-10 71.2 53 66.0
Thhalv10003520m.g Eutrema salsugineum HOM05D003313 ORTHO05D004217 1.5e-10 70.9 53 66.0
Hund25753 Selenicereus undatus HOM05D003313 ORTHO05D004217 1.5e-10 70.9 53 66.0
Sopen01g044950 Solanum pennellii HOM05D003313 ORTHO05D004217 1.5e-10 70.9 53 67.9
PGSC0003DMG400018227 Solanum tuberosum HOM05D003313 ORTHO05D004217 1.5e-10 70.9 53 67.9
Ah.13g077320 Amaranthus hybridus HOM05D003313 ORTHO05D004217 1.9e-10 70.5 53 64.2
CSS0008361 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 1.9e-10 70.5 64 57.8
CSS0011425 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 1.9e-10 70.5 64 57.8
Carub.0006s2256 Capsella rubella HOM05D003313 ORTHO05D004217 1.9e-10 70.5 53 66.0
Peaxi162Scf00071g00133 Petunia axillaris HOM05D003313 ORTHO05D004217 1.9e-10 70.5 53 66.0
Sp2g22700 Schrenkiella parvula HOM05D003313 ORTHO05D004217 1.9e-10 70.5 53 66.0
BcaNung07352 Brassica carinata HOM05D003313 ORTHO05D004217 2.5e-10 70.1 53 66.0
FAN24G1237 Fragaria x ananassa HOM05D003313 ORTHO05D004217 2.5e-10 70.1 64 59.4
Hund19080 Selenicereus undatus HOM05D003313 ORTHO05D004217 2.5e-10 70.1 53 66.0
unitig_699.g19829 Utricularia gibba HOM05D003313 ORTHO05D004217 2.5e-10 70.1 52 67.3
Actinidia11708 Actinidia chinensis HOM05D003313 ORTHO05D004217 3.3e-10 69.7 109 44.0
TWI39G0913 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 4.3e-10 69.3 64 56.2
AL6G36310 Arabidopsis lyrata HOM05D003313 ORTHO05D004217 5.6e-10 68.9 53 66.0
A06p35540 Brassica napus HOM05D003313 ORTHO05D004217 5.6e-10 68.9 54 64.8
BraA06t26479Z Brassica rapa HOM05D003313 ORTHO05D004217 5.6e-10 68.9 54 64.8
Ciclev10018511m.g Citrus clementina HOM05D003313 ORTHO05D004217 5.6e-10 68.9 64 57.8
Glyma.19G223400 Glycine max HOM05D003313 ORTHO05D004217 5.6e-10 68.9 53 67.9
Mapoly0031s0124 Marchantia polymorpha HOM05D003313 ORTHO05D004217 5.6e-10 68.9 53 60.4
CARHR188770 Cardamine hirsuta HOM05D003313 ORTHO05D004217 9.6e-10 68.2 53 64.2
Aa31LG11G3950 Aethionema arabicum HOM05D003313 ORTHO05D004217 1.3e-09 67.8 53 64.2
BcaNung01252 Brassica carinata HOM05D003313 ORTHO05D004217 1.3e-09 67.8 54 63.0
C07p43000 Brassica napus HOM05D003313 ORTHO05D004217 1.3e-09 67.8 54 63.0
BolC7t44829H Brassica oleracea HOM05D003313 ORTHO05D004217 1.3e-09 67.8 54 63.0
Lj9C240T5 Lonicera japonica HOM05D003313 ORTHO05D004217 1.3e-09 67.8 72 51.4
Migut.B00692 Erythranthe guttata HOM05D003313 ORTHO05D004217 2.1e-09 67.0 53 56.6
Os02g0554200 Oryza sativa ssp. japonica HOM05D036147 ORTHO05D008751 2.1e-09 67.0 68 58.8
SMO116G0300 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 2.1e-09 67.0 53 60.4
SEGI_06427 Sequoiadendron giganteum HOM05D003313 ORTHO05D004217 2.4e-08 63.5 52 59.6
AagrBONN_evm.TU.Sc2ySwM_228.3123 Anthoceros agrestis HOM05D003313 ORTHO05D004217 3.1e-08 63.2 46 67.4
SalBow4G0229 Salvia bowleyana HOM05D003313 ORTHO05D004217 4.0e-08 62.8 53 56.6
SalBow4G1329 Salvia bowleyana HOM05D003313 ORTHO05D004217 4.0e-08 62.8 53 56.6
Zm00001eb243820 Zea mays HOM05D036147 ORTHO05D008751 6.4e-06 55.5 77 48.1


User provided reference genes

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