Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 7.2e-37 156.8 81 100.0
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 2.7e-23 111.7 81 70.4
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 3.6e-20 101.3 81 69.1
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 3.4e-18 94.7 81 61.7
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 7.5e-18 93.6 81 64.2
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 7.5e-18 93.6 81 60.5
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 7.5e-18 93.6 81 60.5
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 9.8e-18 93.2 81 64.2
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.3e-17 92.8 81 64.2
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 1.3e-17 92.8 77 58.4
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 1.3e-17 92.8 77 58.4
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 1.7e-17 92.4 81 63.0
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 2.2e-17 92.0 66 65.2
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 3.7e-17 91.3 81 59.3
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 3.7e-17 91.3 81 63.0
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 3.7e-17 91.3 81 63.0
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 3.7e-17 91.3 72 62.5
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 6.4e-17 90.5 79 58.2
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.1e-16 89.7 81 59.3
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.4e-16 89.4 81 58.0
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.4e-16 89.4 81 59.3
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.4e-16 89.4 81 58.0
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 1.9e-16 89.0 81 56.8
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 1.9e-16 89.0 81 61.7
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 2.4e-16 88.6 77 55.8
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 3.2e-16 88.2 64 64.1
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 3.2e-16 88.2 81 60.5
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 4.1e-16 87.8 81 58.0
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 4.1e-16 87.8 81 58.0
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 4.1e-16 87.8 81 58.0
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 5.4e-16 87.4 81 55.6
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 5.4e-16 87.4 81 60.5
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 1.6e-15 85.9 81 58.0
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 1.6e-15 85.9 81 58.0
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 2.0e-15 85.5 81 58.0
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 2.0e-15 85.5 81 58.0
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 2.0e-15 85.5 81 59.3
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 3.5e-15 84.7 81 56.8
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 3.5e-15 84.7 81 58.0
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 3.5e-15 84.7 81 56.8
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 4.6e-15 84.3 81 56.8
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 4.6e-15 84.3 81 56.8
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 4.6e-15 84.3 81 58.0
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 6.0e-15 84.0 81 59.3
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 6.0e-15 84.0 81 56.8
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 6.0e-15 84.0 81 55.6
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 1.0e-14 83.2 81 56.8
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 1.0e-14 83.2 67 59.7
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 1.3e-14 82.8 81 53.1
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 1.3e-14 82.8 81 59.3
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.7e-14 82.4 79 53.2
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 1.7e-14 82.4 71 57.7
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 1.7e-14 82.4 81 58.0
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 1.7e-14 82.4 82 57.3
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 2.3e-14 82.0 81 51.9
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 2.3e-14 82.0 82 54.9
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 2.3e-14 82.0 82 54.9
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 2.3e-14 82.0 81 56.8
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.3e-14 82.0 79 54.4
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 2.3e-14 82.0 65 60.0
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 3.0e-14 81.6 81 55.6
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 3.0e-14 81.6 70 57.1
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 3.0e-14 81.6 81 53.1
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 3.0e-14 81.6 81 58.0
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 3.0e-14 81.6 75 54.7
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 3.9e-14 81.3 79 54.4
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 6.6e-14 80.5 81 51.9
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 8.6e-14 80.1 64 57.8
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 8.6e-14 80.1 81 55.6
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 1.1e-13 79.7 82 56.1
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 1.1e-13 79.7 81 56.8
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 1.9e-13 79.0 82 56.1
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 1.9e-13 79.0 81 54.3
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 2.5e-13 78.6 81 53.1
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 2.5e-13 78.6 81 53.1
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 2.5e-13 78.6 81 55.6
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 3.3e-13 78.2 79 51.9
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 3.3e-13 78.2 79 51.9
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 4.3e-13 77.8 69 56.5
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 4.3e-13 77.8 69 56.5
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 4.3e-13 77.8 69 56.5
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 4.3e-13 77.8 69 56.5
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 4.3e-13 77.8 69 56.5
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 4.3e-13 77.8 58 67.2
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 4.3e-13 77.8 81 53.1
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 5.6e-13 77.4 69 56.5
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 5.6e-13 77.4 69 56.5
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 5.6e-13 77.4 50 66.0
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 7.3e-13 77.0 76 53.9
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 7.3e-13 77.0 69 56.5
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 7.3e-13 77.0 81 51.9
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 9.5e-13 76.6 69 56.5
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 9.5e-13 76.6 65 58.5
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 9.5e-13 76.6 69 56.5
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 1.2e-12 76.3 81 50.6
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 1.2e-12 76.3 80 50.0
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 1.2e-12 76.3 45 73.3
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.6e-12 75.9 74 51.4
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 1.6e-12 75.9 69 53.6
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 1.6e-12 75.9 81 53.1
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 1.6e-12 75.9 64 51.6
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 2.1e-12 75.5 47 68.1
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 2.8e-12 75.1 70 55.7
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 2.8e-12 75.1 81 49.4
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 2.8e-12 75.1 81 51.9
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 3.6e-12 74.7 48 68.8
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 4.7e-12 74.3 59 54.2
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 4.7e-12 74.3 64 53.1
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 4.7e-12 74.3 56 64.3
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 4.7e-12 74.3 81 50.6
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 6.2e-12 73.9 81 54.3
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 6.2e-12 73.9 81 49.4
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 8.1e-12 73.6 81 51.9
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 1.4e-11 72.8 62 54.8
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 1.4e-11 72.8 81 48.1
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 1.8e-11 72.4 80 50.0
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 1.8e-11 72.4 47 63.8
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 1.8e-11 72.4 62 59.7
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 2.3e-11 72.0 62 54.8
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 2.3e-11 72.0 79 49.4
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 2.3e-11 72.0 79 48.1
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 3.1e-11 71.6 81 51.9
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 4.0e-11 71.2 44 68.2
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 4.0e-11 71.2 74 52.7
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 4.0e-11 71.2 47 61.7
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 5.2e-11 70.9 81 49.4
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 5.2e-11 70.9 81 49.4
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 5.2e-11 70.9 81 49.4
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 5.2e-11 70.9 81 49.4
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 5.2e-11 70.9 81 49.4
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 5.2e-11 70.9 70 51.4
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 6.8e-11 70.5 64 51.6
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 6.8e-11 70.5 81 48.1
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 8.9e-11 70.1 80 51.2
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 1.2e-10 69.7 44 68.2
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 1.2e-10 69.7 44 68.2
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.2e-10 69.7 69 58.0
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.5e-10 69.3 79 49.4
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 2.6e-10 68.6 81 46.9
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 2.6e-10 68.6 66 48.5
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 3.4e-10 68.2 63 50.8
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 4.4e-10 67.8 45 66.7
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 5.8e-10 67.4 81 48.1
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 1.2e-07 59.7 64 53.1
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 4.6e-07 57.8 67 44.8
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 4.6e-07 57.8 72 50.0
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 1.0e-06 56.6 63 52.4
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 1.7e-06 55.8 71 46.5
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 6.6e-06 53.9 35 62.9


User provided reference genes

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