Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 4.3e-108 394.8 223 100.0
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 4.0e-69 265.4 151 88.7
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 7.3e-63 244.6 225 56.9
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 1.2e-62 243.8 171 70.2
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 1.6e-62 243.4 171 69.6
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 2.8e-62 242.7 219 57.1
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 3.6e-62 242.3 225 55.6
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 4.7e-62 241.9 171 69.0
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 1.4e-61 240.4 222 55.9
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 3.1e-61 239.2 171 67.3
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 6.8e-61 238.0 171 67.8
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 6.8e-61 238.0 171 68.4
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 6.8e-61 238.0 171 67.8
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 6.8e-61 238.0 171 67.8
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 8.9e-61 237.7 219 55.7
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 8.9e-61 237.7 171 68.4
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 1.2e-60 237.3 171 70.2
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 1.2e-60 237.3 171 67.8
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 1.5e-60 236.9 171 70.2
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 2.0e-60 236.5 217 55.8
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 3.4e-60 235.7 171 69.6
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 4.4e-60 235.3 171 66.7
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 5.8e-60 235.0 171 66.1
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 5.8e-60 235.0 171 65.5
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 7.5e-60 234.6 229 57.6
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 1.7e-59 233.4 219 57.1
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 1.7e-59 233.4 171 67.3
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 2.2e-59 233.0 171 67.8
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 3.7e-59 232.3 171 65.5
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 3.7e-59 232.3 224 56.2
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 3.7e-59 232.3 171 64.9
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 4.9e-59 231.9 171 65.5
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 1.1e-58 230.7 171 64.3
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.1e-58 230.7 171 66.1
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 1.1e-58 230.7 171 65.5
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 1.1e-58 230.7 171 66.1
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 1.4e-58 230.3 171 66.1
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.4e-58 229.6 171 66.1
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.4e-58 229.6 171 66.1
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 3.2e-58 229.2 171 66.7
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 4.1e-58 228.8 171 65.5
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 4.1e-58 228.8 220 55.0
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 5.4e-58 228.4 171 65.5
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 5.4e-58 228.4 171 65.5
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 5.4e-58 228.4 171 66.1
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 5.4e-58 228.4 171 65.5
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 9.2e-58 227.6 171 64.3
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 9.2e-58 227.6 171 66.1
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 9.2e-58 227.6 162 68.5
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 2.0e-57 226.5 171 65.5
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 4.6e-57 225.3 171 66.1
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 6.0e-57 224.9 171 63.7
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 6.0e-57 224.9 171 63.7
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 6.0e-57 224.9 171 64.9
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 6.0e-57 224.9 171 63.7
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 7.8e-57 224.6 173 63.6
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 7.8e-57 224.6 217 52.5
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 7.8e-57 224.6 171 64.9
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 7.8e-57 224.6 155 68.4
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 1.0e-56 224.2 171 63.7
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 1.7e-56 223.4 162 67.9
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 2.3e-56 223.0 168 63.1
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 3.0e-56 222.6 171 62.0
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 3.9e-56 222.2 171 62.6
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 5.0e-56 221.9 174 61.5
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 6.6e-56 221.5 232 50.4
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 6.6e-56 221.5 179 62.6
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 1.1e-55 220.7 172 63.4
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 1.5e-55 220.3 172 59.9
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 1.9e-55 219.9 168 62.5
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 1.9e-55 219.9 171 64.9
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 3.3e-55 219.2 217 51.2
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 7.3e-55 218.0 154 68.2
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 9.5e-55 217.6 217 51.2
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 1.2e-54 217.2 186 58.1
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 2.1e-54 216.5 217 51.2
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 2.1e-54 216.5 162 66.0
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 3.6e-54 215.7 217 51.6
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 3.6e-54 215.7 217 51.6
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 3.6e-54 215.7 217 51.6
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 3.6e-54 215.7 168 60.7
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 6.2e-54 214.9 155 67.7
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 8.1e-54 214.5 168 59.5
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 1.1e-53 214.2 171 60.2
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 1.4e-53 213.8 217 51.2
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 1.4e-53 213.8 217 51.2
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 1.4e-53 213.8 171 60.2
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 1.8e-53 213.4 156 68.6
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 3.1e-53 212.6 156 66.7
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 3.1e-53 212.6 168 60.7
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 3.1e-53 212.6 174 60.9
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 4.0e-53 212.2 169 57.4
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 5.2e-53 211.8 168 61.3
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 6.8e-53 211.5 171 60.2
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 8.9e-53 211.1 154 70.1
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 1.5e-52 210.3 168 61.3
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 3.4e-52 209.1 164 62.2
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 3.4e-52 209.1 156 66.0
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 3.4e-52 209.1 156 66.0
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 3.4e-52 209.1 171 59.6
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 5.8e-52 208.4 156 65.4
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 9.8e-52 207.6 156 65.4
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 2.9e-51 206.1 161 64.0
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 4.9e-51 205.3 171 61.4
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.4e-50 203.8 171 60.8
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 1.9e-50 203.4 161 64.0
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 2.4e-50 203.0 156 65.4
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 6.0e-49 198.4 158 60.1
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 6.0e-49 198.4 156 62.2
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 7.8e-49 198.0 142 67.6
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 2.3e-48 196.4 155 60.6
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 2.3e-48 196.4 156 64.1
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 3.0e-48 196.1 147 66.7
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 6.6e-48 194.9 142 68.3
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 1.5e-47 193.7 170 57.1
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 1.9e-47 193.4 142 67.6
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 3.3e-47 192.6 155 63.2
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 2.1e-46 189.9 142 65.5
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 4.7e-46 188.7 186 54.3
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 4.7e-46 188.7 186 54.3
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 8.1e-46 188.0 170 55.3
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 1.1e-45 187.6 156 59.0
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 3.1e-45 186.0 169 51.5
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 8.9e-45 184.5 142 62.7
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 2.2e-43 179.9 142 63.4
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 4.9e-43 178.7 125 69.6
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 6.4e-43 178.3 171 54.4
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 1.1e-42 177.6 142 66.9
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 1.9e-42 176.8 136 64.0
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 1.9e-42 176.8 136 62.5
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 1.2e-41 174.1 164 60.4
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 1.2e-41 174.1 164 60.4
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.5e-39 167.2 117 68.4
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 1.5e-39 167.2 173 49.7
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 3.1e-37 159.5 136 58.8
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 5.2e-37 158.7 176 47.7
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 6.9e-37 158.3 162 51.2
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 3.4e-36 156.0 106 71.7
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 9.9e-36 154.5 106 70.8
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 1.4e-34 150.6 108 67.6
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 1.9e-34 150.2 170 48.2
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 2.5e-31 139.8 157 46.5
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 1.2e-28 131.0 174 42.0
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 1.5e-28 130.6 174 42.0
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 1.9e-26 123.6 165 41.8
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 9.0e-21 104.8 82 58.5
Lalb_Chr23g0271431 Lupinus albus HOM05D004948 ORTHO05D005824 2.9e-19 99.8 167 39.5
MCO05G504 Micromonas commoda HOM05D004948 ORTHO05D005824 4.8e-14 82.4 196 31.1


User provided reference genes

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