Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0615050 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 7.4e-29 129.8 63 100.0
Os01g0615100 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 7.9e-15 83.2 61 67.2
Zm00001eb267000 Zea mays HOM05D007791 ORTHO05D000653 1.6e-12 75.5 61 59.0
Os12g0548700 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 8.2e-12 73.2 61 63.9
Os12g0437800 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 4.1e-11 70.9 61 57.4
Zm00001eb355990 Zea mays HOM05D007791 ORTHO05D000653 9.1e-11 69.7 61 54.1
Os12g0548401 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 1.2e-10 69.3 61 59.0
Zm00001eb267030 Zea mays HOM05D007791 ORTHO05D000653 1.2e-10 69.3 61 57.4
Zm00001eb267010 Zea mays HOM05D007791 ORTHO05D000653 1.5e-10 68.9 61 57.4
Atru.chr8.2017 Acer truncatum HOM05D007791 ORTHO05D000653 5.0e-09 63.9 66 48.5
Atru.chr8.2026 Acer truncatum HOM05D007791 ORTHO05D000653 5.0e-09 63.9 66 48.5
Zm00001eb138720 Zea mays HOM05D007791 ORTHO05D000653 1.1e-08 62.8 65 47.7
PSO063G1561 Papaver somniferum HOM05D007791 ORTHO05D000653 1.4e-08 62.4 64 46.9
GSVIVG01034125001 Vitis vinifera HOM05D007791 ORTHO05D000653 4.2e-08 60.8 65 46.2
Duzib106G0108 Durio zibethinus HOM05D007791 ORTHO05D000653 5.5e-08 60.5 65 47.7
Nitab4.5_0007505g0010 Nicotiana tabacum HOM05D002101 ORTHO05D002126 5.5e-08 60.5 64 46.9
Peaxi162Scf00013g00738 Petunia axillaris HOM05D007791 ORTHO05D000653 7.2e-08 60.1 66 47.0
Pp3c23_22180 Physcomitrium patens HOM05D007791 ORTHO05D000653 7.2e-08 60.1 61 49.2
CSS0008915 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 9.4e-08 59.7 66 48.5
Duzib106G0736 Durio zibethinus HOM05D007791 ORTHO05D000653 9.4e-08 59.7 65 44.6
Lj3g0002224 Lotus japonicus HOM05D007791 ORTHO05D000653 9.4e-08 59.7 64 50.0
Zm00001eb355980 Zea mays HOM05D007791 ORTHO05D000653 9.4e-08 59.7 62 50.0
Eucgr.A01291 Eucalyptus grandis HOM05D007791 ORTHO05D000653 1.2e-07 59.3 65 47.7
Medtr3g020800 Medicago truncatula HOM05D007791 ORTHO05D000653 1.6e-07 58.9 64 51.6
Potri.006G088664 Populus trichocarpa HOM05D007791 ORTHO05D000653 1.6e-07 58.9 64 48.4
Gohir.A04G084100 Gossypium hirsutum HOM05D007791 ORTHO05D000653 2.1e-07 58.5 65 47.7
Thecc.05G034600 Theobroma cacao HOM05D007791 ORTHO05D000653 2.1e-07 58.5 65 46.2
CAN.G587.57 Capsicum annuum HOM05D007791 ORTHO05D000653 2.7e-07 58.2 64 43.8
Phvul.005G032000 Phaseolus vulgaris HOM05D007791 ORTHO05D000653 2.7e-07 58.2 64 48.4
Ciclev10013177m.g Citrus clementina HOM05D007791 ORTHO05D000653 3.6e-07 57.8 61 45.9
COL.COLO4_14751 Corchorus olitorius HOM05D007791 ORTHO05D000653 3.6e-07 57.8 65 46.2
Gohir.D04G122900 Gossypium hirsutum HOM05D007791 ORTHO05D000653 3.6e-07 57.8 65 47.7
TAR623G1446 Trochodendron aralioides HOM05D007791 ORTHO05D000653 3.6e-07 57.8 65 44.6
Nitab4.5_0002449g0040 Nicotiana tabacum HOM05D002101 ORTHO05D002126 4.6e-07 57.4 64 45.3
Prupe.8G229400 Prunus persica HOM05D001004 ORTHO05D000653 4.6e-07 57.4 64 45.3
Solyc06g069400.4 Solanum lycopersicum HOM05D002101 ORTHO05D002126 4.6e-07 57.4 64 43.8
PGSC0003DMG400004064 Solanum tuberosum HOM05D007791 ORTHO05D000653 4.6e-07 57.4 64 43.8
ATR0559G001 Amborella trichopoda HOM05D007791 ORTHO05D000653 7.9e-07 56.6 61 45.9
Potri.006G088700 Populus trichocarpa HOM05D007791 ORTHO05D000653 7.9e-07 56.6 64 46.9
Gorai.012G105800 Gossypium raimondii HOM05D007791 ORTHO05D000653 1.0e-06 56.2 65 47.7
Manes.09G094800 Manihot esculenta HOM05D007791 ORTHO05D000653 1.0e-06 56.2 64 48.4
Oeu006881.1 Olea europaea HOM05D007791 ORTHO05D000653 1.0e-06 56.2 66 45.5
Potri.006G088500 Populus trichocarpa HOM05D007791 ORTHO05D000653 1.0e-06 56.2 64 46.9
Potri.006G088616 Populus trichocarpa HOM05D007791 ORTHO05D000653 1.0e-06 56.2 64 46.9
RcHm_v2.0_Chr4g0390831 Rosa chinensis HOM05D001004 ORTHO05D000653 1.0e-06 56.2 64 45.3
Cpa.g.sc228.1 Carica papaya HOM05D007791 ORTHO05D000653 1.4e-06 55.8 64 46.9
Psat1g089000 Pisum sativum HOM05D007791 ORTHO05D000653 1.4e-06 55.8 64 45.3
arahy.Tifrunner.gnm1.ann1.0A2T8K Arachis hypogaea HOM05D007791 ORTHO05D000653 1.8e-06 55.5 64 46.9
Dinv37146 Davidia involucrata HOM05D007791 ORTHO05D000653 1.8e-06 55.5 64 45.3
Duzib106G1185 Durio zibethinus HOM05D007791 ORTHO05D000653 1.8e-06 55.5 56 44.6
DCAR_010421 Daucus carota HOM05D007791 ORTHO05D000653 2.3e-06 55.1 61 42.6
Os11g0279750 Oryza sativa ssp. japonica HOM05D001004 ORTHO05D000653 2.3e-06 55.1 64 46.9
SMO351G0292 Selaginella moellendorffii HOM05D007791 ORTHO05D000653 2.3e-06 55.1 65 49.2
Sopen06g026680 Solanum pennellii HOM05D007791 ORTHO05D000653 2.3e-06 55.1 64 42.2
Lsat_1_v5_gn_5_153840 Lactuca sativa HOM05D007791 ORTHO05D000653 3.0e-06 54.7 64 45.3
Rhsim05G0195400 Rhododendron simsii HOM05D007791 ORTHO05D000653 3.0e-06 54.7 64 43.8
TPR.G35313 Trifolium pratense HOM05D007791 ORTHO05D000653 3.0e-06 54.7 64 45.3
Thecc.05G034800 Theobroma cacao HOM05D007791 ORTHO05D000653 3.9e-06 54.3 56 44.6
CSS0023434 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 5.1e-06 53.9 64 45.3
CSS0036268 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 5.1e-06 53.9 64 45.3
RcHm_v2.0_Chr4g0390821 Rosa chinensis HOM05D001004 ORTHO05D000653 5.1e-06 53.9 64 43.8
Hund02894 Selenicereus undatus HOM05D001004 ORTHO05D000653 5.1e-06 53.9 64 50.0
CsaV3_3G012540 Cucumis sativus L. HOM05D001004 ORTHO05D000653 6.7e-06 53.5 64 42.2
Rhsim05G0195200 Rhododendron simsii HOM05D007791 ORTHO05D000653 6.7e-06 53.5 64 46.9
HPP92_012980 Vanilla planifolia HOM05D007791 ORTHO05D000653 6.7e-06 53.5 64 46.9
TPR.G3886 Trifolium pratense HOM05D007791 ORTHO05D000653 8.8e-06 53.1 64 45.3


User provided reference genes

Program Settings