Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 2.7e-101 372.1 202 100.0
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 1.0e-71 273.9 194 77.3
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 7.8e-64 247.7 140 86.4
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 7.8e-64 247.7 183 71.6
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 1.0e-63 247.3 183 71.6
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 1.3e-63 246.9 179 73.2
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 1.7e-63 246.5 141 85.1
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 5.0e-63 245.0 151 80.8
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 6.6e-63 244.6 185 70.3
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 8.6e-63 244.2 137 86.1
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 8.6e-63 244.2 137 84.7
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 8.6e-63 244.2 155 78.1
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 1.5e-62 243.4 153 79.1
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 1.5e-62 243.4 137 84.7
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 1.5e-62 243.4 137 84.7
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 1.9e-62 243.0 137 86.1
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 2.5e-62 242.7 137 85.4
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 2.5e-62 242.7 137 86.9
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 3.3e-62 242.3 179 70.9
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 3.3e-62 242.3 137 86.1
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 3.3e-62 242.3 158 80.4
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 3.3e-62 242.3 137 86.1
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 4.3e-62 241.9 144 81.2
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 4.3e-62 241.9 139 84.2
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 4.3e-62 241.9 182 71.4
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 7.3e-62 241.1 137 85.4
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 7.3e-62 241.1 139 84.2
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 7.3e-62 241.1 137 83.9
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 7.3e-62 241.1 138 84.8
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 9.5e-62 240.7 137 84.7
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 1.2e-61 240.4 157 77.1
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 1.2e-61 240.4 153 77.8
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 1.2e-61 240.4 153 78.4
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 1.2e-61 240.4 168 75.0
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 1.6e-61 240.0 163 73.0
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 1.6e-61 240.0 157 77.1
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 1.6e-61 240.0 137 85.4
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 2.1e-61 239.6 137 84.7
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 2.8e-61 239.2 137 84.7
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 2.8e-61 239.2 137 84.7
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 2.8e-61 239.2 175 72.6
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 3.6e-61 238.8 137 83.9
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 3.6e-61 238.8 137 86.1
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 3.6e-61 238.8 150 78.7
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 4.7e-61 238.4 137 83.2
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 8.0e-61 237.7 139 83.5
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 1.1e-60 237.3 137 83.9
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 1.1e-60 237.3 138 83.3
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 1.4e-60 236.9 137 83.9
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 1.4e-60 236.9 137 83.2
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 1.4e-60 236.9 147 79.6
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 1.8e-60 236.5 157 76.4
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 1.8e-60 236.5 151 77.5
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 1.8e-60 236.5 137 82.5
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 2.3e-60 236.1 136 83.1
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 2.3e-60 236.1 180 69.4
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 3.1e-60 235.7 185 69.7
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 3.1e-60 235.7 138 81.9
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 5.2e-60 235.0 183 67.8
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 6.8e-60 234.6 136 82.4
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 6.8e-60 234.6 136 82.4
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 8.9e-60 234.2 181 68.5
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 8.9e-60 234.2 137 83.2
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 1.2e-59 233.8 171 72.5
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 1.2e-59 233.8 137 82.5
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 1.2e-59 233.8 149 77.2
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 1.2e-59 233.8 137 81.8
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 1.5e-59 233.4 188 68.1
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 2.6e-59 232.6 179 69.8
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 2.6e-59 232.6 136 83.1
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 3.4e-59 232.3 179 68.7
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 3.4e-59 232.3 130 86.2
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 5.8e-59 231.5 137 81.8
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 7.5e-59 231.1 137 82.5
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 4.9e-58 228.4 145 80.0
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 6.4e-58 228.0 129 85.3
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 8.3e-58 227.6 137 80.3
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 8.3e-58 227.6 130 83.1
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 8.3e-58 227.6 149 75.8
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 2.4e-57 226.1 130 83.8
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 4.1e-57 225.3 137 80.3
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 2.1e-56 223.0 129 82.9
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 6.0e-56 221.5 176 68.2
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 7.8e-56 221.1 123 84.6
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 7.8e-56 221.1 158 74.1
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 1.3e-55 220.3 124 85.5
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 3.0e-55 219.2 130 82.3
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 2.5e-54 216.1 140 76.4
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 7.3e-54 214.5 137 78.1
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.2e-53 213.8 137 78.1
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 1.1e-52 210.7 124 82.3
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 3.4e-51 205.7 130 74.6
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 7.6e-51 204.5 116 82.8
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 1.3e-47 193.7 162 65.4
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 4.3e-46 188.7 138 67.4
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 1.5e-43 180.3 179 55.3
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 1.4e-41 173.7 138 68.8
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 1.2e-40 170.6 107 79.4
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 3.5e-40 169.1 120 76.7
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.5e-38 163.7 102 81.4
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 1.9e-38 163.3 139 68.3
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 5.6e-38 161.8 159 59.7
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 5.6e-38 161.8 159 59.7
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 5.6e-38 161.8 159 59.7
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 4.8e-37 158.7 104 77.9
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 1.5e-35 153.7 84 88.1
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 2.0e-35 153.3 103 76.7
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 4.2e-33 145.6 88 84.1
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 1.6e-32 143.7 123 64.2
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 9.6e-30 134.4 171 52.0
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 2.8e-29 132.9 98 72.4
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 1.1e-28 131.0 106 68.9
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 3.1e-28 129.4 74 77.0
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 4.5e-27 125.6 124 57.3
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 8.4e-26 121.3 129 52.7
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 1.4e-25 120.6 129 53.5
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 2.2e-18 96.7 62 74.2
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 1.5e-11 73.9 73 52.1
HPP92_020183 Vanilla planifolia HOM05D005057 ORTHO05D006570 5.1e-07 58.9 59 44.1


User provided reference genes

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