Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0606133 Oryza sativa ssp. japonica HOM05D004067 ORTHO05D004827 5.8e-165 584.3 333 100.0
Zm00001eb161590 Zea mays HOM05D004067 ORTHO05D004827 7.7e-109 397.9 314 71.7
Zm00001eb357840 Zea mays HOM05D004067 ORTHO05D004827 1.3e-103 380.6 314 68.2
HPP92_008055 Vanilla planifolia HOM05D004067 ORTHO05D004827 1.7e-44 184.1 333 39.9
Nn2g15268 Nelumbo nucifera HOM05D004067 ORTHO05D004827 2.2e-31 140.6 343 35.3
Eucgr.H00672 Eucalyptus grandis HOM05D004067 ORTHO05D004827 1.9e-30 137.5 348 37.1
Glyma.09G118400 Glycine max HOM05D004067 ORTHO05D004827 1.9e-30 137.5 349 36.1
HanXRQChr12g0377591 Helianthus annuus HOM05D004067 ORTHO05D004827 1.9e-30 137.5 345 35.7
Phvul.009G073100 Phaseolus vulgaris HOM05D004067 ORTHO05D004827 3.2e-30 136.7 348 35.3
COL.COLO4_20478 Corchorus olitorius HOM05D004067 ORTHO05D004827 2.7e-29 133.7 357 35.6
DCAR_007292 Daucus carota HOM05D004067 ORTHO05D004827 2.7e-29 133.7 337 34.7
Potri.006G111600 Populus trichocarpa HOM05D004067 ORTHO05D004827 6.0e-29 132.5 344 34.3
FAN07G2052 Fragaria x ananassa HOM05D004067 ORTHO05D004827 1.0e-28 131.7 344 35.2
Cpa.g.sc65.131 Carica papaya HOM05D004067 ORTHO05D004827 1.7e-28 131.0 342 36.3
FvH4_4g32390 Fragaria vesca HOM05D004067 ORTHO05D004827 2.3e-28 130.6 345 35.1
FAN12G3660 Fragaria x ananassa HOM05D004067 ORTHO05D004827 2.3e-28 130.6 345 35.1
Lj1g0003353 Lotus japonicus HOM05D004067 ORTHO05D004827 3.0e-28 130.2 348 36.8
Duzib251G0172 Durio zibethinus HOM05D004067 ORTHO05D004827 3.9e-28 129.8 358 35.2
FAN17G2802 Fragaria x ananassa HOM05D004067 ORTHO05D004827 8.7e-28 128.6 345 34.5
Sabra06G0086800 Salix brachista HOM05D004067 ORTHO05D004827 8.7e-28 128.6 348 34.5
VMungo1309G2882 Vigna mungo HOM05D004067 ORTHO05D004827 8.7e-28 128.6 348 34.2
Duzib248G1046 Durio zibethinus HOM05D004067 ORTHO05D004827 1.5e-27 127.9 354 35.0
Lj3P873T10 Lonicera japonica HOM05D004067 ORTHO05D004827 1.9e-27 127.5 346 34.1
Glyma.08G257000 Glycine max HOM05D004067 ORTHO05D004827 2.5e-27 127.1 342 36.3
Lj2g0007524 Lotus japonicus HOM05D004067 ORTHO05D004827 3.3e-27 126.7 351 35.9
FAN22G1587 Fragaria x ananassa HOM05D004067 ORTHO05D004827 4.3e-27 126.3 346 34.1
Actinidia36670 Actinidia chinensis HOM05D004067 ORTHO05D004827 5.6e-27 125.9 341 34.0
Rhsim09G0097800 Rhododendron simsii HOM05D004067 ORTHO05D004827 7.3e-27 125.6 338 33.7
SalBow1G2245 Salvia bowleyana HOM05D004067 ORTHO05D004827 9.6e-27 125.2 320 35.6
TAR627G0408 Trochodendron aralioides HOM05D004067 ORTHO05D004827 9.6e-27 125.2 343 33.2
Dinv07642 Davidia involucrata HOM05D004067 ORTHO05D004827 1.3e-26 124.8 341 33.7
Dinv12988 Davidia involucrata HOM05D004067 ORTHO05D004827 1.3e-26 124.8 341 33.7
Thecc.02G281200 Theobroma cacao HOM05D004067 ORTHO05D004827 2.1e-26 124.0 357 34.5
Lalb_Chr25g0280641 Lupinus albus HOM05D004067 ORTHO05D004827 2.8e-26 123.6 341 35.2
PGR119G1546 Punica granatum HOM05D004067 ORTHO05D004827 2.8e-26 123.6 329 34.0
BcaC06g31313 Brassica carinata HOM05D004067 ORTHO05D004827 3.6e-26 123.2 354 35.3
BraA09t37935Z Brassica rapa HOM05D004067 ORTHO05D004827 3.6e-26 123.2 356 33.7
CSS0042578 Camellia sinensis var. sinensis HOM05D004067 ORTHO05D004827 3.6e-26 123.2 337 32.6
ECA234G3105 Erigeron canadensis HOM05D004067 ORTHO05D004827 6.2e-26 122.5 344 35.2
A09p23340 Brassica napus HOM05D004067 ORTHO05D004827 8.1e-26 122.1 356 33.4
Thhalv10001208m.g Eutrema salsugineum HOM05D004067 ORTHO05D004827 8.1e-26 122.1 356 33.1
Medtr7g020840 Medicago truncatula HOM05D004067 ORTHO05D004827 8.1e-26 122.1 342 35.4
VMungo1383G0958 Vigna mungo HOM05D004067 ORTHO05D004827 1.1e-25 121.7 343 35.0
Ciclev10015653m.g Citrus clementina HOM05D004067 ORTHO05D004827 1.4e-25 121.3 352 33.5
Gorai.002G179700 Gossypium raimondii HOM05D004067 ORTHO05D004827 1.4e-25 121.3 353 33.4
Oeu045868.1 Olea europaea HOM05D004067 ORTHO05D004827 1.4e-25 121.3 323 35.0
arahy.Tifrunner.gnm1.ann1.Z6YRHE Arachis hypogaea HOM05D004067 ORTHO05D004827 1.8e-25 120.9 368 34.0
BcaC04g21591 Brassica carinata HOM05D004067 ORTHO05D004827 1.8e-25 120.9 356 33.1
Sc04g0005490 Simmondsia chinensis HOM05D004067 ORTHO05D004827 2.4e-25 120.6 343 35.6
C09p30090 Brassica napus HOM05D004067 ORTHO05D004827 4.0e-25 119.8 355 32.7
Ca_12604_v3 Cicer arietinum L. HOM05D004067 ORTHO05D004827 4.0e-25 119.8 341 33.4
Ca_25714_v3 Cicer arietinum L. HOM05D004067 ORTHO05D004827 4.0e-25 119.8 341 33.4
Eucgr.L01715 Eucalyptus grandis HOM05D004067 ORTHO05D004827 4.0e-25 119.8 354 36.7
Lj6A746T53 Lonicera japonica HOM05D004067 ORTHO05D004827 4.0e-25 119.8 343 33.8
SGA_v2.0_scaffold257G45678 Striga asiatica HOM05D004067 ORTHO05D004827 4.0e-25 119.8 316 35.4
PSO478G1363 Papaver somniferum HOM05D004067 ORTHO05D004827 5.3e-25 119.4 350 32.9
BcaB07g30747 Brassica carinata HOM05D004067 ORTHO05D004827 6.9e-25 119.0 356 33.4
THA.LOC104824143 Tarenaya hassleriana HOM05D004067 ORTHO05D004827 9.0e-25 118.6 351 33.6
BcaC06g34189 Brassica carinata HOM05D004067 ORTHO05D004827 1.2e-24 118.2 357 34.5
BolC9t55873H Brassica oleracea HOM05D004067 ORTHO05D004827 1.2e-24 118.2 356 32.9
Gohir.D01G145500 Gossypium hirsutum HOM05D004067 ORTHO05D004827 1.2e-24 118.2 353 33.1
Psat0s4857g0040 Pisum sativum HOM05D004067 ORTHO05D004827 1.2e-24 118.2 345 33.3
Nitab4.5_0000742g0040 Nicotiana tabacum HOM05D004067 ORTHO05D004827 1.5e-24 117.9 366 33.3
Phvul.008G019900 Phaseolus vulgaris HOM05D004067 ORTHO05D004827 2.0e-24 117.5 341 34.6
MSTRG.2173 Avicennia marina HOM05D004067 ORTHO05D004827 2.6e-24 117.1 341 34.6
CiPaw.05G249400 Carya illinoinensis HOM05D004067 ORTHO05D004827 3.4e-24 116.7 342 33.9
BcaC06g34181 Brassica carinata HOM05D004067 ORTHO05D004827 4.5e-24 116.3 354 34.5
Gohir.A01G152600 Gossypium hirsutum HOM05D004067 ORTHO05D004827 4.5e-24 116.3 353 33.4
Hma1.2p1_0346F.1_g131330 Hydrangea macrophylla HOM05D004067 ORTHO05D004827 4.5e-24 116.3 346 33.2
Hma1.2p1_0346F.1_g131336 Hydrangea macrophylla HOM05D004067 ORTHO05D004827 4.5e-24 116.3 346 33.2
Lalb_Chr10g0096231 Lupinus albus HOM05D004067 ORTHO05D004827 7.6e-24 115.5 353 34.0
arahy.Tifrunner.gnm1.ann1.KUY2JB Arachis hypogaea HOM05D004067 ORTHO05D004827 9.9e-24 115.2 358 33.8
MD16G1028500 Malus domestica HOM05D004067 ORTHO05D004827 1.3e-23 114.8 341 33.1
Psat0s2696g0040 Pisum sativum HOM05D004067 ORTHO05D004827 1.3e-23 114.8 345 32.8
Potri.001G156300 Populus trichocarpa HOM05D004067 ORTHO05D004827 1.3e-23 114.8 349 32.7
Psat0s6339g0160 Pisum sativum HOM05D004067 ORTHO05D004827 1.7e-23 114.4 329 33.4
Atru.chr11.1199 Acer truncatum HOM05D004067 ORTHO05D004827 2.2e-23 114.0 353 32.6
ClCG07G006240 Citrullus lanatus HOM05D004067 ORTHO05D004827 2.2e-23 114.0 341 33.1
Prupe.1G324200 Prunus persica HOM05D004067 ORTHO05D004827 2.2e-23 114.0 344 32.0
Sp2g12840 Schrenkiella parvula HOM05D004067 ORTHO05D004827 2.2e-23 114.0 357 33.6
CSS0041256 Camellia sinensis var. sinensis HOM05D004067 ORTHO05D004827 2.9e-23 113.6 335 31.9
Haze_11008 Corylus avellana HOM05D004067 ORTHO05D004827 2.9e-23 113.6 345 32.8
Manes.12G111500 Manihot esculenta HOM05D004067 ORTHO05D004827 2.9e-23 113.6 353 33.1
CARHR143920 Cardamine hirsuta HOM05D004067 ORTHO05D004827 3.8e-23 113.2 353 32.9
CsaV3_5G013550 Cucumis sativus L. HOM05D004067 ORTHO05D004827 3.8e-23 113.2 340 33.5
CsaV3_UNG236440 Cucumis sativus L. HOM05D004067 ORTHO05D004827 3.8e-23 113.2 340 33.5
PSO017G4920 Papaver somniferum HOM05D004067 ORTHO05D004827 3.8e-23 113.2 348 32.5
QL01p001776 Quercus lobata HOM05D004067 ORTHO05D004827 3.8e-23 113.2 344 33.1
Aa31LG2G8540 Aethionema arabicum HOM05D004067 ORTHO05D004827 4.9e-23 112.8 355 32.4
MELO3C018333.2 Cucumis melo HOM05D004067 ORTHO05D004827 4.9e-23 112.8 338 33.1
Manes.12G111400 Manihot esculenta HOM05D004067 ORTHO05D004827 6.4e-23 112.5 352 32.7
ATR0053G001 Amborella trichopoda HOM05D004067 ORTHO05D004827 8.4e-23 112.1 340 30.3
CANSAT11G0808 Cannabis sativa HOM05D004067 ORTHO05D004827 8.4e-23 112.1 341 32.3
Oeu059504.1 Olea europaea HOM05D004067 ORTHO05D004827 8.4e-23 112.1 344 33.7
TPR.G39266 Trifolium pratense HOM05D004067 ORTHO05D004827 8.4e-23 112.1 345 32.5
AL5G10370 Arabidopsis lyrata HOM05D004067 ORTHO05D004827 1.1e-22 111.7 355 31.8
Atru.chr11.1779 Acer truncatum HOM05D004067 ORTHO05D004827 1.9e-22 110.9 355 31.8
AT2G01410 Arabidopsis thaliana HOM05D004067 ORTHO05D004827 1.9e-22 110.9 358 32.1
SHI04655 Sapria himalayana HOM05D004067 ORTHO05D004827 1.9e-22 110.9 350 33.4
Medtr1g030760 Medicago truncatula HOM05D004067 ORTHO05D004827 2.4e-22 110.5 349 32.1
GSVIVG01011761001 Vitis vinifera HOM05D004067 ORTHO05D004827 2.4e-22 110.5 350 30.6
TWI81G0187 Tripterygium wilfordii HOM05D004067 ORTHO05D004827 3.2e-22 110.2 341 32.0
Atru.chr11.1192 Acer truncatum HOM05D004067 ORTHO05D004827 4.2e-22 109.8 353 32.0
Lsat_1_v5_gn_4_14640 Lactuca sativa HOM05D004067 ORTHO05D004827 4.2e-22 109.8 326 33.4
Cc02_g26910 Coffea canephora HOM05D004067 ORTHO05D004827 7.1e-22 109.0 345 32.5
Sed0006623 Sechium edule HOM05D004067 ORTHO05D004827 7.1e-22 109.0 341 32.6
MSTRG.13583 Avicennia marina HOM05D004067 ORTHO05D004827 9.3e-22 108.6 337 33.8
Carub.0005s0037 Capsella rubella HOM05D004067 ORTHO05D004827 9.3e-22 108.6 357 32.2
Psat0s2696g0240 Pisum sativum HOM05D004067 ORTHO05D004827 1.6e-21 107.8 338 32.2
THA.LOC104805062 Tarenaya hassleriana HOM05D004067 ORTHO05D004827 2.7e-21 107.1 350 33.1
Cfa008606 Carpinus fangiana HOM05D004067 ORTHO05D004827 4.6e-21 106.3 336 32.7
Sopen05g003980 Solanum pennellii HOM05D004067 ORTHO05D004827 4.6e-21 106.3 345 31.9
Psat0s8196g0040 Pisum sativum HOM05D004067 ORTHO05D004827 6.0e-21 105.9 345 31.6
Aqoxy5G03134 Aquilegia oxysepala HOM05D004067 ORTHO05D004827 1.3e-20 104.8 354 31.6
CANSAT35G0597 Cannabis sativa HOM05D004067 ORTHO05D004827 2.3e-20 104.0 340 29.4
Nitab4.5_0007576g0010 Nicotiana tabacum HOM05D004067 ORTHO05D004827 3.0e-20 103.6 361 31.3
Migut.E00421 Erythranthe guttata HOM05D004067 ORTHO05D004827 6.7e-20 102.4 338 32.2
Nitab4.5_0001832g0050 Nicotiana tabacum HOM05D004067 ORTHO05D004827 6.7e-20 102.4 361 31.3
Nn3g18214 Nelumbo nucifera HOM05D004067 ORTHO05D004827 2.5e-19 100.5 317 32.8
CDE11G1068 Ceratophyllum demersum HOM05D006533 ORTHO05D004827 7.4e-19 99.0 305 32.5
Actinidia14967 Actinidia chinensis HOM05D004067 ORTHO05D004827 1.3e-18 98.2 260 34.6
Psat0s2696g0160 Pisum sativum HOM05D004067 ORTHO05D004827 1.6e-18 97.8 332 31.6
PGSC0003DMG400030500 Solanum tuberosum HOM05D004067 ORTHO05D004827 2.8e-18 97.1 345 31.0
Solyc04g007660.1 Solanum lycopersicum HOM05D004067 ORTHO05D004827 6.2e-18 95.9 362 29.3
Psat3g190280 Pisum sativum HOM05D004067 ORTHO05D004827 1.8e-17 94.4 346 30.6
Lalb_Chr01g0007191 Lupinus albus HOM05D004067 ORTHO05D004827 2.4e-17 94.0 345 31.6
Ca_07073_v3 Cicer arietinum L. HOM05D004067 ORTHO05D004827 3.1e-17 93.6 346 32.4
Sopen04g002750 Solanum pennellii HOM05D004067 ORTHO05D004827 4.0e-17 93.2 362 29.0
PGSC0003DMG400005957 Solanum tuberosum HOM05D004067 ORTHO05D004827 6.9e-17 92.4 362 29.6
Psat0s1827g0080 Pisum sativum HOM05D004067 ORTHO05D004827 1.5e-16 91.3 322 31.4
Peaxi162Scf00253g01313 Petunia axillaris HOM05D004067 ORTHO05D004827 1.3e-15 88.2 344 30.5
Dinv12989 Davidia involucrata HOM05D004067 ORTHO05D004827 1.7e-15 87.8 321 30.2
Medtr3g070770 Medicago truncatula HOM05D004067 ORTHO05D004827 4.9e-15 86.3 339 30.4
TPR.G36928 Trifolium pratense HOM05D004067 ORTHO05D004827 2.5e-14 84.0 276 32.2
Ah.07g197270 Amaranthus hybridus HOM05D004067 ORTHO05D004827 5.5e-14 82.8 331 29.9
C07p31800 Brassica napus HOM05D004067 ORTHO05D004827 2.7e-13 80.5 216 35.6
BolC7t43720H Brassica oleracea HOM05D004067 ORTHO05D004827 2.7e-13 80.5 216 35.6
unitig_29.g31872 Utricularia gibba HOM05D004067 ORTHO05D004827 1.8e-12 77.8 328 29.0
TAR627G0040 Trochodendron aralioides HOM05D004067 ORTHO05D004827 1.6e-10 71.2 245 31.8
CAN.G1298.2 Capsicum annuum HOM05D004067 ORTHO05D004827 2.8e-10 70.5 336 26.2
unitig_27.g25177 Utricularia gibba HOM05D004067 ORTHO05D004827 2.8e-10 70.5 222 32.0
Psat0s10301g0080 Pisum sativum HOM05D004067 ORTHO05D004827 3.7e-10 70.1 207 32.9
Psat0s2696g0200 Pisum sativum HOM05D004067 ORTHO05D004827 6.2e-10 69.3 225 33.3
SEGI_06567 Sequoiadendron giganteum HOM05D004067 ORTHO05D004827 2.4e-09 67.4 320 26.6
Medtr6g021910 Medicago truncatula HOM05D004067 ORTHO05D004827 1.5e-08 64.7 331 29.0
Psat6g042640 Pisum sativum HOM05D004067 ORTHO05D004827 7.2e-06 55.8 154 33.1


User provided reference genes

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