Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0549500 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D007418 0.0e+00 1315.1 679 100.0
Zm00001eb162380 Zea mays HOM05D000922 ORTHO05D007418 7.5e-228 794.3 541 74.7
TAR622G0946 Trochodendron aralioides HOM05D000922 ORTHO05D007418 3.2e-186 656.0 583 57.6
Nn4g22714 Nelumbo nucifera HOM05D000922 ORTHO05D007418 1.9e-183 646.7 571 58.0
Aqoxy3G02884 Aquilegia oxysepala HOM05D000922 ORTHO05D007418 4.3e-183 645.6 572 58.7
CiPaw.11G024700 Carya illinoinensis HOM05D000922 ORTHO05D007418 2.1e-182 643.3 571 56.6
PSO478G1387 Papaver somniferum HOM05D000922 ORTHO05D007418 1.2e-180 637.5 576 55.6
PSO017G6576 Papaver somniferum HOM05D000922 ORTHO05D007418 4.5e-180 635.6 576 55.4
QL10p011002 Quercus lobata HOM05D000922 ORTHO05D007418 4.9e-179 632.1 570 56.3
Prupe.5G171800 Prunus persica HOM05D000922 ORTHO05D007418 9.3e-178 627.9 571 55.7
HPP92_009707 Vanilla planifolia HOM05D000922 ORTHO05D007418 3.9e-176 622.5 488 62.3
Lj9A446G57 Lonicera japonica HOM05D000922 ORTHO05D007418 8.7e-176 621.3 581 56.1
vmacro19399 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 2.5e-175 619.8 570 54.6
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 4.3e-175 619.0 576 54.3
ATR1091G081 Amborella trichopoda HOM05D000922 ORTHO05D007418 5.6e-175 618.6 572 56.5
CSS0017974 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D007418 5.6e-175 618.6 574 55.6
MD14G1178400 Malus domestica HOM05D000922 ORTHO05D007418 1.3e-174 617.5 571 54.6
GSVIVG01007724001 Vitis vinifera HOM05D000922 ORTHO05D007418 3.7e-174 615.9 579 54.1
FvH4_5g05470 Fragaria vesca HOM05D000922 ORTHO05D007418 6.2e-174 615.1 579 54.4
FAN08G1289 Fragaria x ananassa HOM05D000922 ORTHO05D007418 8.1e-174 614.8 580 54.5
Cfa019149 Carpinus fangiana HOM05D000922 ORTHO05D007418 1.4e-173 614.0 574 54.0
FAN18G1332 Fragaria x ananassa HOM05D000922 ORTHO05D007418 2.4e-173 613.2 572 54.5
MD06G1172500 Malus domestica HOM05D000922 ORTHO05D007418 9.0e-173 611.3 572 54.5
Atru.chr9.2494 Acer truncatum HOM05D000922 ORTHO05D007418 1.2e-172 610.9 573 54.6
Sabra15G0102900 Salix brachista HOM05D000922 ORTHO05D007418 2.6e-172 609.8 581 53.7
FAN04G3074 Fragaria x ananassa HOM05D000922 ORTHO05D007418 3.4e-172 609.4 579 53.4
Ciclev10018588m.g Citrus clementina HOM05D000922 ORTHO05D007418 4.5e-172 609.0 573 54.5
Potri.012G082500 Populus trichocarpa HOM05D000922 ORTHO05D007418 4.5e-172 609.0 569 54.3
Haze_07516 Corylus avellana HOM05D000922 ORTHO05D007418 1.0e-171 607.8 599 52.3
RcHm_v2.0_Chr7g0193371 Rosa chinensis HOM05D000922 ORTHO05D007418 1.3e-171 607.4 572 53.8
Hma1.2p1_2165F.1_g315780 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 4.9e-171 605.5 571 56.0
Hma1.2p1_2469F.1_g322680 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 1.1e-170 604.4 571 55.7
Manes.14G064400 Manihot esculenta HOM05D000922 ORTHO05D007418 1.1e-170 604.4 570 54.0
Potri.015G078300 Populus trichocarpa HOM05D000922 ORTHO05D007418 4.2e-170 602.4 583 54.2
Eucgr.B00297 Eucalyptus grandis HOM05D000922 ORTHO05D007418 2.3e-168 596.7 581 53.2
Thecc.03G014400 Theobroma cacao HOM05D000922 ORTHO05D007418 1.9e-167 593.6 584 52.9
CAN.G1166.3 Capsicum annuum HOM05D000922 ORTHO05D007418 2.5e-167 593.2 587 53.3
Sc04g0001750 Simmondsia chinensis HOM05D000922 ORTHO05D007418 2.5e-167 593.2 575 53.4
PGR083G1532 Punica granatum HOM05D000922 ORTHO05D007418 5.7e-167 592.0 574 53.1
Duzib205G1607 Durio zibethinus HOM05D000922 ORTHO05D007418 7.4e-167 591.7 579 54.1
FAN13G2825 Fragaria x ananassa HOM05D000922 ORTHO05D007418 2.1e-166 590.1 628 50.3
Sabra12G0059200 Salix brachista HOM05D000922 ORTHO05D007418 4.8e-166 589.0 587 52.3
CANSAT80G2096 Cannabis sativa HOM05D000922 ORTHO05D007418 8.2e-166 588.2 582 52.1
Cc04_g12110 Coffea canephora HOM05D000922 ORTHO05D007418 8.2e-166 588.2 564 54.1
Sopen03g031910 Solanum pennellii HOM05D000922 ORTHO05D007418 1.8e-165 587.0 591 53.0
arahy.Tifrunner.gnm1.ann1.F0ZNJX Arachis hypogaea HOM05D000922 ORTHO05D007418 4.0e-165 585.9 573 52.4
arahy.Tifrunner.gnm1.ann1.9TFG5W Arachis hypogaea HOM05D000922 ORTHO05D007418 9.0e-165 584.7 573 52.4
Lj1g0015886 Lotus japonicus HOM05D000922 ORTHO05D007418 1.5e-164 583.9 569 52.7
TPR.G20687 Trifolium pratense HOM05D000922 ORTHO05D007418 1.5e-164 583.9 574 54.2
Peaxi162Scf00255g01019 Petunia axillaris HOM05D000922 ORTHO05D007418 7.6e-164 581.6 572 53.0
Glyma.04G184600 Glycine max HOM05D000922 ORTHO05D007418 1.3e-163 580.9 574 53.1
HanXRQChr05g0155771 Helianthus annuus HOM05D000922 ORTHO05D007418 2.9e-163 579.7 571 51.8
Hund02754 Selenicereus undatus HOM05D000922 ORTHO05D007418 5.0e-163 578.9 569 53.1
Medtr3g077620 Medicago truncatula HOM05D000922 ORTHO05D007418 2.5e-162 576.6 572 52.6
SGA_v2.0_scaffold90G27900 Striga asiatica HOM05D000922 ORTHO05D007418 3.2e-162 576.2 581 52.2
Phvul.009G177300 Phaseolus vulgaris HOM05D000922 ORTHO05D007418 1.6e-161 573.9 575 51.8
TWI23G1000 Tripterygium wilfordii HOM05D000922 ORTHO05D007418 2.1e-161 573.5 553 54.2
DCAR_016480 Daucus carota HOM05D000922 ORTHO05D007418 2.7e-161 573.2 580 51.4
Glyma.06G181100 Glycine max HOM05D000922 ORTHO05D007418 6.1e-161 572.0 571 52.2
EL10Ac5g10730 Beta vulgaris HOM05D000922 ORTHO05D007418 1.0e-160 571.2 564 52.8
Ca_16166_v3 Cicer arietinum L. HOM05D000922 ORTHO05D007418 1.3e-160 570.9 572 51.6
Lalb_Chr23g0273281 Lupinus albus HOM05D000922 ORTHO05D007418 1.3e-160 570.9 572 51.7
Gohir.D12G275700 Gossypium hirsutum HOM05D000922 ORTHO05D007418 1.8e-160 570.5 582 51.5
Gorai.008G296200 Gossypium raimondii HOM05D000922 ORTHO05D007418 1.8e-160 570.5 582 51.9
MSTRG.23139 Avicennia marina HOM05D000922 ORTHO05D007418 3.0e-160 569.7 592 49.8
FAN18G2587 Fragaria x ananassa HOM05D000922 ORTHO05D007418 5.1e-160 568.9 650 47.7
Psat0ss3962g0400 Pisum sativum HOM05D000922 ORTHO05D007418 1.1e-159 567.8 570 51.1
Lsat_1_v5_gn_5_15041 Lactuca sativa HOM05D000922 ORTHO05D007418 1.9e-159 567.0 555 51.4
Peaxi162Scf00089g01840 Petunia axillaris HOM05D000922 ORTHO05D007418 3.3e-159 566.2 585 51.1
ClCG06G017060 Citrullus lanatus HOM05D000922 ORTHO05D007418 7.4e-159 565.1 576 51.4
Migut.O00098 Erythranthe guttata HOM05D000922 ORTHO05D007418 2.8e-158 563.1 573 51.3
Nitab4.5_0001514g0050 Nicotiana tabacum HOM05D000922 ORTHO05D007418 2.8e-158 563.1 578 51.6
VMungo1309G1607 Vigna mungo HOM05D000922 ORTHO05D007418 3.7e-158 562.8 572 52.6
CDE06G1806 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 6.3e-158 562.0 497 57.3
Sed0021678 Sechium edule HOM05D000922 ORTHO05D007418 1.4e-157 560.8 577 51.6
Duzib068G1349 Durio zibethinus HOM05D000922 ORTHO05D007418 1.8e-157 560.5 589 50.8
Aa31LG4G16800 Aethionema arabicum HOM05D000922 ORTHO05D007418 4.5e-156 555.8 568 51.9
AUR62030946 Chenopodium quinoa HOM05D000922 ORTHO05D007418 5.9e-156 555.4 570 51.9
AUR62008194 Chenopodium quinoa HOM05D000922 ORTHO05D007418 1.7e-155 553.9 569 51.8
CARHR156940 Cardamine hirsuta HOM05D000922 ORTHO05D007418 5.0e-155 552.4 567 51.9
BcaB05g22925 Brassica carinata HOM05D000922 ORTHO05D007418 2.5e-154 550.1 574 51.7
AL5G27540 Arabidopsis lyrata HOM05D000922 ORTHO05D007418 7.2e-154 548.5 568 53.0
Thhalv10010097m.g Eutrema salsugineum HOM05D000922 ORTHO05D007418 1.2e-153 547.7 565 52.4
Sp5g13830 Schrenkiella parvula HOM05D000922 ORTHO05D007418 1.6e-153 547.4 573 51.8
SalBow5G3118 Salvia bowleyana HOM05D000922 ORTHO05D007418 4.6e-153 545.8 540 53.5
BraA01t02462Z Brassica rapa HOM05D000922 ORTHO05D007418 7.9e-153 545.0 569 51.8
A01p25510 Brassica napus HOM05D000922 ORTHO05D007418 1.4e-152 544.3 569 51.8
BcaC09g49852 Brassica carinata HOM05D000922 ORTHO05D007418 5.1e-152 542.3 568 51.6
AT3G48195 Arabidopsis thaliana HOM05D000922 ORTHO05D007418 6.7e-152 542.0 568 51.2
SalBow5G1735 Salvia bowleyana HOM05D000922 ORTHO05D007418 8.8e-152 541.6 540 53.3
BolC1t03155H Brassica oleracea HOM05D000922 ORTHO05D007418 1.1e-151 541.2 569 51.5
Ah.02g110580 Amaranthus hybridus HOM05D000922 ORTHO05D007418 2.5e-151 540.0 573 49.2
Carub.0005s1432 Capsella rubella HOM05D000922 ORTHO05D007418 2.8e-150 536.6 569 51.5
Solyc03g112830.4 Solanum lycopersicum HOM05D000922 ORTHO05D007418 4.8e-150 535.8 500 54.2
unitig_26.g9619 Utricularia gibba HOM05D000922 ORTHO05D007418 2.4e-149 533.5 575 49.2
Oeu016401.1 Olea europaea HOM05D000922 ORTHO05D007418 2.5e-146 523.5 476 55.0
MELO3C017091.2 Cucumis melo HOM05D000922 ORTHO05D007418 3.6e-145 519.6 595 48.2
THA.LOC104798972 Tarenaya hassleriana HOM05D000922 ORTHO05D007418 2.4e-141 506.9 468 56.6
Mapoly0023s0026 Marchantia polymorpha HOM05D000922 ORTHO05D007418 3.2e-122 443.4 518 45.9
Dinv38573 Davidia involucrata HOM05D000922 ORTHO05D007418 1.3e-118 431.4 382 56.8
Pp3c26_1280 Physcomitrium patens HOM05D000922 ORTHO05D007418 4.1e-117 426.4 563 42.6
Gohir.A12G275000 Gossypium hirsutum HOM05D000922 ORTHO05D007418 7.0e-117 425.6 409 53.5
SMO367G0209 Selaginella moellendorffii HOM05D000922 ORTHO05D007418 2.0e-116 424.1 503 44.1
SEGI_19196 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 2.6e-111 407.1 367 55.3
Cpa.g.sc2974.2 Carica papaya HOM05D000922 ORTHO05D007418 2.0e-108 397.5 311 61.7
SHI17077 Sapria himalayana HOM05D000922 ORTHO05D007418 3.9e-107 393.3 752 33.9
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 5.6e-106 389.4 571 41.9
SEGI_24933 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 1.4e-104 384.8 545 40.4
Actinidia33077 Actinidia chinensis HOM05D000922 ORTHO05D007418 4.7e-97 359.8 371 51.2
CsaV3_1G001450 Cucumis sativus L. HOM05D000922 ORTHO05D007418 2.2e-94 350.9 350 51.7
Nitab4.5_0000025g0520 Nicotiana tabacum HOM05D000922 ORTHO05D007418 2.3e-91 340.9 343 52.8
ECA246G4214 Erigeron canadensis HOM05D000922 ORTHO05D007418 1.6e-65 255.0 223 55.2
COL.COLO4_30068 Corchorus olitorius HOM05D000922 ORTHO05D007418 4.8e-65 253.4 338 40.2
Dinv20638 Davidia involucrata HOM05D000922 ORTHO05D007418 2.6e-63 247.7 227 58.1
Actinidia19330 Actinidia chinensis HOM05D000922 ORTHO05D007418 3.4e-63 247.3 344 43.6
Cpa.g.sc2974.1 Carica papaya HOM05D000922 ORTHO05D007418 3.3e-42 177.6 192 49.0
C01p31950 Brassica napus HOM05D000922 ORTHO05D007418 5.3e-40 170.2 194 49.0
ECA246G0682 Erigeron canadensis HOM05D000922 ORTHO05D007418 4.8e-33 147.1 159 50.3
CDE07G0520 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 2.7e-28 131.3 293 30.7
PRCOL_00005721 Prasinoderma coloniale HOM05D000922 ORTHO05D007418 1.4e-16 92.4 188 33.0
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 7.0e-16 90.1 80 56.2
Peaxi162Scf00397g00009 Petunia axillaris HOM05D000922 ORTHO05D015732 3.6e-12 77.8 57 59.6
Peaxi162Scf01130g00212 Petunia axillaris HOM05D000861 ORTHO05D007418 4.7e-12 77.4 57 61.4
Peaxi162Scf00009g02111 Petunia axillaris HOM05D000861 ORTHO05D007418 6.1e-12 77.0 60 61.7
Actinidia33076 Actinidia chinensis HOM05D000922 ORTHO05D007418 1.4e-11 75.9 184 34.2
Peaxi162Scf00470g00024 Petunia axillaris HOM05D000861 ORTHO05D007418 3.0e-11 74.7 57 61.4
CAN.G1651.1 Capsicum annuum HOM05D003439 ORTHO05D000484 5.2e-11 73.9 69 52.2
Peaxi162Scf00304g01332 Petunia axillaris HOM05D000922 ORTHO05D007418 6.8e-11 73.6 54 61.1


User provided reference genes

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