Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0535300 Oryza sativa ssp. japonica HOM05D052916 ORTHO05D049569 5.6e-186 654.1 314 100.0
Os01g0535100 Oryza sativa ssp. japonica HOM05D052916 ORTHO05D049569 1.6e-44 184.1 240 46.7
Os01g0844700 Oryza sativa ssp. japonica HOM05D000082 ORTHO05D000038 1.5e-08 64.7 50 54.0
Os06g0534900 Oryza sativa ssp. japonica HOM05D000157 ORTHO05D000311 1.2e-07 61.6 74 51.4
PGR044G0297 Punica granatum HOM05D000082 ORTHO05D030517 1.2e-07 61.6 92 35.9
MCO09G135 Micromonas commoda HOM05D002398 ORTHO05D002817 2.7e-07 60.5 72 43.1
MELO3C017919.2 Cucumis melo HOM05D000082 ORTHO05D000038 3.6e-07 60.1 47 46.8
TWI60G0680 Tripterygium wilfordii HOM05D000082 ORTHO05D000038 4.7e-07 59.7 52 44.2
FAN09G0945 Fragaria x ananassa HOM05D000082 ORTHO05D000038 6.1e-07 59.3 47 53.2
Prupe.1G270300 Prunus persica HOM05D000082 ORTHO05D000038 6.1e-07 59.3 47 44.7
FvH4_5g06150 Fragaria vesca HOM05D006854 ORTHO05D029383 8.0e-07 58.9 53 43.4
Gohir.D05G009150 Gossypium hirsutum HOM05D013045 ORTHO05D011325 8.0e-07 58.9 59 47.5
Gorai.009G009400 Gossypium raimondii HOM05D013045 ORTHO05D000038 8.0e-07 58.9 59 47.5
CiPaw.12G018100 Carya illinoinensis HOM05D000082 ORTHO05D000038 1.0e-06 58.5 64 40.6
Migut.H02331 Erythranthe guttata HOM05D000082 ORTHO05D000038 1.0e-06 58.5 50 44.0
THA.LOC104809116 Tarenaya hassleriana HOM05D008302 ORTHO05D010264 1.0e-06 58.5 54 38.9
EL10Ac5g11154 Beta vulgaris HOM05D000082 ORTHO05D000038 1.4e-06 58.2 51 47.1
Cfa024291 Carpinus fangiana HOM05D002398 ORTHO05D000038 1.4e-06 58.2 60 43.3
CiPaw.11G168800 Carya illinoinensis HOM05D000086 ORTHO05D001065 1.4e-06 58.2 52 48.1
FAN18G3992 Fragaria x ananassa HOM05D006854 ORTHO05D029383 1.4e-06 58.2 53 43.4
Os01g0311100 Oryza sativa ssp. japonica HOM05D000086 ORTHO05D000311 1.4e-06 58.2 63 44.4
Os02g0248440 Oryza sativa ssp. japonica HOM05D000157 ORTHO05D000311 1.4e-06 58.2 53 47.2
RcHm_v2.0_Chr6g0255331 Rosa chinensis HOM05D006854 ORTHO05D029561 1.4e-06 58.2 53 50.9
TPR.G18937 Trifolium pratense HOM05D000082 ORTHO05D000038 1.4e-06 58.2 45 48.9
Zm00001eb372150 Zea mays HOM05D000086 ORTHO05D000983 1.4e-06 58.2 60 46.7
FAN19G0486 Fragaria x ananassa HOM05D012452 ORTHO05D017950 1.8e-06 57.8 54 46.3
Gohir.A05G008400 Gossypium hirsutum HOM05D013045 ORTHO05D000038 1.8e-06 57.8 60 46.7
HanXRQChr12g0366841 Helianthus annuus HOM05D000082 ORTHO05D000038 1.8e-06 57.8 78 35.9
Os02g0790600 Oryza sativa ssp. japonica HOM05D000086 ORTHO05D000983 1.8e-06 57.8 88 39.8
Peaxi162Scf00013g01223 Petunia axillaris HOM05D000082 ORTHO05D000038 1.8e-06 57.8 44 47.7
Peaxi162Scf00431g00512 Petunia axillaris HOM05D000082 ORTHO05D000038 1.8e-06 57.8 44 47.7
SHI18175 Sapria himalayana HOM05D000082 ORTHO05D000038 1.8e-06 57.8 50 46.0
Sed0011285 Sechium edule HOM05D009340 ORTHO05D000038 1.8e-06 57.8 88 30.7
BcaC02g11581 Brassica carinata HOM05D000157 ORTHO05D000691 2.3e-06 57.4 74 39.2
C04p13790 Brassica napus HOM05D000157 ORTHO05D000691 2.3e-06 57.4 74 39.2
BolC4t22969H Brassica oleracea HOM05D000157 ORTHO05D000691 2.3e-06 57.4 74 39.2
Carub.0006s3133 Capsella rubella HOM05D008302 ORTHO05D000038 2.3e-06 57.4 44 50.0
COL.COLO4_00142 Corchorus olitorius HOM05D000082 ORTHO05D000038 2.3e-06 57.4 68 38.2
COL.COLO4_16606 Corchorus olitorius HOM05D000082 ORTHO05D000038 2.3e-06 57.4 68 38.2
TWI81G0163 Tripterygium wilfordii HOM05D000082 ORTHO05D000038 2.3e-06 57.4 66 42.4
Gohir.D13G201400 Gossypium hirsutum HOM05D000082 ORTHO05D000038 3.0e-06 57.0 63 38.1
Gorai.013G230200 Gossypium raimondii HOM05D000082 ORTHO05D000038 3.0e-06 57.0 63 38.1
Oeu046284.1 Olea europaea HOM05D000082 ORTHO05D000038 3.0e-06 57.0 72 34.7
Os09g0446275 Oryza sativa ssp. japonica HOM05D000082 ORTHO05D000038 3.0e-06 57.0 55 41.8
Solyc07g016060.3 Solanum lycopersicum HOM05D000082 ORTHO05D000038 3.0e-06 57.0 49 44.9
SGA_v2.0_scaffold63G21650 Striga asiatica HOM05D000082 ORTHO05D000038 3.0e-06 57.0 53 45.3
THA.LOC104808919 Tarenaya hassleriana HOM05D008302 ORTHO05D010264 3.0e-06 57.0 54 38.9
THA.LOC104822911 Tarenaya hassleriana HOM05D000082 ORTHO05D000038 3.0e-06 57.0 60 48.3
vmacro06246 Vaccinium macrocarpon HOM05D000082 ORTHO05D000038 3.0e-06 57.0 69 36.2
CARHR129160 Cardamine hirsuta HOM05D000157 ORTHO05D000691 4.0e-06 56.6 74 36.5
AUR62010909 Chenopodium quinoa HOM05D000082 ORTHO05D000038 4.0e-06 56.6 64 37.5
COL.COLO4_23941 Corchorus olitorius HOM05D000082 ORTHO05D000038 4.0e-06 56.6 59 42.4
FvH4_2g16170 Fragaria vesca HOM05D000082 ORTHO05D045585 4.0e-06 56.6 49 51.0
FAN13G3143 Fragaria x ananassa HOM05D006854 ORTHO05D029383 4.0e-06 56.6 53 41.5
Gohir.A13G196250 Gossypium hirsutum HOM05D000082 ORTHO05D000038 4.0e-06 56.6 63 38.1
Lj5g0008708 Lotus japonicus HOM05D000086 ORTHO05D005495 4.0e-06 56.6 60 41.7
Os02g0645000 Oryza sativa ssp. japonica HOM05D000440 ORTHO05D000295 4.0e-06 56.6 56 46.4
Prupe.5G083200 Prunus persica HOM05D000082 ORTHO05D000038 4.0e-06 56.6 49 46.9
SGA_v2.0_scaffold37G14579 Striga asiatica HOM05D000082 ORTHO05D000038 4.0e-06 56.6 49 46.9
Zm00001eb279830 Zea mays HOM05D000086 ORTHO05D000983 4.0e-06 56.6 60 45.0
BcaB07g33416 Brassica carinata HOM05D000157 ORTHO05D000691 5.2e-06 56.2 101 34.7
A05p10700 Brassica napus HOM05D000157 ORTHO05D000691 5.2e-06 56.2 71 39.4
FvH4_4g00060 Fragaria vesca HOM05D000082 ORTHO05D019548 5.2e-06 56.2 46 45.7
FAN12G0522 Fragaria x ananassa HOM05D000082 ORTHO05D019548 5.2e-06 56.2 46 45.7
Potri.019G086500 Populus trichocarpa HOM05D000082 ORTHO05D014613 5.2e-06 56.2 54 40.7
Sed0000724 Sechium edule HOM05D000082 ORTHO05D000038 5.2e-06 56.2 44 45.5
Sed0002646 Sechium edule HOM05D000082 ORTHO05D000038 5.2e-06 56.2 51 43.1
Sed0007105 Sechium edule HOM05D000086 ORTHO05D000431 5.2e-06 56.2 78 37.2
Solyc12g008480.3 Solanum lycopersicum HOM05D000082 ORTHO05D000038 5.2e-06 56.2 46 47.8
Sopen07g005870 Solanum pennellii HOM05D000082 ORTHO05D000038 5.2e-06 56.2 49 44.9
PGSC0003DMG400002830 Solanum tuberosum HOM05D000082 ORTHO05D000038 5.2e-06 56.2 44 47.7
Thecc.02G319000 Theobroma cacao HOM05D000082 ORTHO05D000038 5.2e-06 56.2 47 46.8
AL4G31020 Arabidopsis lyrata HOM05D000157 ORTHO05D000691 6.7e-06 55.8 74 39.2
BcaB02g10047 Brassica carinata HOM05D002398 ORTHO05D002817 6.7e-06 55.8 73 38.4
BcaB04g17855 Brassica carinata HOM05D000157 ORTHO05D000691 6.7e-06 55.8 54 44.4
C03p58700 Brassica napus HOM05D001172 ORTHO05D001128 6.7e-06 55.8 54 46.3
Carub.0001s2219 Capsella rubella HOM05D002398 ORTHO05D002817 6.7e-06 55.8 54 48.1
CDE11G1015 Ceratophyllum demersum HOM05D000082 ORTHO05D000038 6.7e-06 55.8 52 44.2
Ciclev10001606m.g Citrus clementina HOM05D000082 ORTHO05D000038 6.7e-06 55.8 72 37.5
CsaV3_3G047400 Cucumis sativus L. HOM05D000082 ORTHO05D000038 6.7e-06 55.8 57 38.6
FvH4_3g45050 Fragaria vesca HOM05D006854 ORTHO05D035528 6.7e-06 55.8 54 46.3
FAN11G2503 Fragaria x ananassa HOM05D006854 ORTHO05D035528 6.7e-06 55.8 52 46.2
FAN16G0046 Fragaria x ananassa HOM05D041815 ORTHO05D001197 6.7e-06 55.8 50 50.0
FAN23G1102 Fragaria x ananassa HOM05D010557 ORTHO05D000038 6.7e-06 55.8 46 47.8
MBI06_g35212_MAGBIO Magnolia biondii HOM05D000082 ORTHO05D000038 6.7e-06 55.8 74 35.1
MD04G1076700 Malus domestica HOM05D000082 ORTHO05D000038 6.7e-06 55.8 59 44.1
Potri.012G053800 Populus trichocarpa HOM05D000187 ORTHO05D000230 6.7e-06 55.8 48 47.9
QL08p042523 Quercus lobata HOM05D000082 ORTHO05D008126 6.7e-06 55.8 50 46.0
RcHm_v2.0_Chr7g0218811 Rosa chinensis HOM05D010671 ORTHO05D013417 6.7e-06 55.8 45 46.7
SHI01076 Sapria himalayana HOM05D000616 ORTHO05D000038 6.7e-06 55.8 44 50.0
THA.LOC104809211 Tarenaya hassleriana HOM05D000082 ORTHO05D000038 6.7e-06 55.8 47 46.8
Zm00001eb101500 Zea mays HOM05D000341 ORTHO05D001197 6.7e-06 55.8 54 48.1
Zm00001eb177000 Zea mays HOM05D000086 ORTHO05D000983 6.7e-06 55.8 83 39.8
Aa31LG9G16210 Aethionema arabicum HOM05D000157 ORTHO05D000691 8.8e-06 55.5 77 37.7
EL10Ac5g12769 Beta vulgaris HOM05D009314 ORTHO05D010771 8.8e-06 55.5 114 29.8
COL.COLO4_38530 Corchorus olitorius HOM05D000187 ORTHO05D000230 8.8e-06 55.5 50 46.0
FvH4_1g06020 Fragaria vesca HOM05D010557 ORTHO05D000038 8.8e-06 55.5 47 44.7
FAN08G1170 Fragaria x ananassa HOM05D006854 ORTHO05D029383 8.8e-06 55.5 45 42.2
Gohir.A08G242850 Gossypium hirsutum HOM05D013297 ORTHO05D000038 8.8e-06 55.5 50 42.0
HanXRQChr11g0344471 Helianthus annuus HOM05D010307 ORTHO05D000038 8.8e-06 55.5 46 52.2
Medtr3g025510 Medicago truncatula HOM05D000082 ORTHO05D000038 8.8e-06 55.5 48 45.8
Nn4g24349 Nelumbo nucifera HOM05D000082 ORTHO05D000038 8.8e-06 55.5 61 41.0
SHI18182 Sapria himalayana HOM05D000082 ORTHO05D000038 8.8e-06 55.5 50 44.0
Hund08620 Selenicereus undatus HOM05D000187 ORTHO05D000926 8.8e-06 55.5 162 29.0
PGSC0003DMG400014839 Solanum tuberosum HOM05D000082 ORTHO05D000038 8.8e-06 55.5 44 50.0
Zm00001eb248760 Zea mays HOM05D000440 ORTHO05D000295 8.8e-06 55.5 57 43.9


User provided reference genes

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