Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0533800 Oryza sativa ssp. japonica HOM05D000230 ORTHO05D000176 2.0e-83 312.4 159 100.0
MSTRG.15036 Avicennia marina HOM05D000230 ORTHO05D000176 2.8e-08 62.8 71 47.9
CSS0030603 Camellia sinensis var. sinensis HOM05D000230 ORTHO05D000176 4.8e-08 62.0 86 39.5
GSVIVG01020854001 Vitis vinifera HOM05D000230 ORTHO05D000176 4.8e-08 62.0 97 37.1
Ciclev10030478m.g Citrus clementina HOM05D000230 ORTHO05D000176 1.4e-07 60.5 105 40.0
Glyma.08G308700 Glycine max HOM05D000230 ORTHO05D000176 1.4e-07 60.5 73 49.3
Os02g0247000 Oryza sativa ssp. japonica HOM05D000230 ORTHO05D000176 1.4e-07 60.5 65 43.1
Phvul.006G032100 Phaseolus vulgaris HOM05D000230 ORTHO05D000176 1.4e-07 60.5 73 49.3
VMungo0540G1646 Vigna mungo HOM05D000230 ORTHO05D000176 1.4e-07 60.5 73 49.3
Cpa.g.sc50.101 Carica papaya HOM05D000230 ORTHO05D000176 1.8e-07 60.1 99 39.4
CiPaw.03G191200 Carya illinoinensis HOM05D000230 ORTHO05D000176 1.8e-07 60.1 68 44.1
Migut.M00579 Erythranthe guttata HOM05D000230 ORTHO05D000176 5.3e-07 58.5 72 41.7
Thhalv10006529m.g Eutrema salsugineum HOM05D000230 ORTHO05D000176 5.3e-07 58.5 89 41.6
SalBow7G0442 Salvia bowleyana HOM05D000230 ORTHO05D000176 5.3e-07 58.5 96 37.5
Aqoxy4G00278 Aquilegia oxysepala HOM05D000230 ORTHO05D000176 6.9e-07 58.2 65 43.1
BcaC07g42063 Brassica carinata HOM05D000230 ORTHO05D000176 6.9e-07 58.2 72 44.4
Duzib264G0578 Durio zibethinus HOM05D000230 ORTHO05D000176 6.9e-07 58.2 75 45.3
Zm00001eb163000 Zea mays HOM05D000230 ORTHO05D000176 6.9e-07 58.2 65 44.6
Carub.0001s0585 Capsella rubella HOM05D000230 ORTHO05D000176 9.0e-07 57.8 65 46.2
Os01g0533100 Oryza sativa ssp. japonica HOM05D000230 ORTHO05D000176 9.0e-07 57.8 117 37.6
Phvul.006G031850 Phaseolus vulgaris HOM05D000230 ORTHO05D000176 9.0e-07 57.8 105 42.9
THA.LOC104800947 Tarenaya hassleriana HOM05D000230 ORTHO05D000176 9.0e-07 57.8 92 40.2
TWI23G0044 Tripterygium wilfordii HOM05D000230 ORTHO05D000176 9.0e-07 57.8 64 46.9
Cfa023349 Carpinus fangiana HOM05D000230 ORTHO05D000176 1.2e-06 57.4 72 44.4
COL.COLO4_26561 Corchorus olitorius HOM05D000230 ORTHO05D000176 1.2e-06 57.4 119 38.7
Glyma.18G107900 Glycine max HOM05D000230 ORTHO05D000176 1.2e-06 57.4 72 47.2
Gohir.A05G380100 Gossypium hirsutum HOM05D000230 ORTHO05D000176 1.2e-06 57.4 75 44.0
Sc15g0002350 Simmondsia chinensis HOM05D000230 ORTHO05D000176 1.2e-06 57.4 95 37.9
arahy.Tifrunner.gnm1.ann1.D7QXWT Arachis hypogaea HOM05D000230 ORTHO05D000176 1.5e-06 57.0 103 39.8
arahy.Tifrunner.gnm1.ann1.FE9AN4 Arachis hypogaea HOM05D000230 ORTHO05D000176 1.5e-06 57.0 103 39.8
CARHR006100 Cardamine hirsuta HOM05D000230 ORTHO05D000176 1.5e-06 57.0 65 47.7
Cpa.g.sc714.1 Carica papaya HOM05D000230 ORTHO05D000176 1.5e-06 57.0 109 36.7
Gohir.D04G035500 Gossypium hirsutum HOM05D000230 ORTHO05D000176 1.5e-06 57.0 65 44.6
Gorai.012G040000 Gossypium raimondii HOM05D000230 ORTHO05D000176 1.5e-06 57.0 65 44.6
Lj1C602G2 Lonicera japonica HOM05D000230 ORTHO05D000176 1.5e-06 57.0 101 33.7
PGR042G1083 Punica granatum HOM05D000230 ORTHO05D000176 1.5e-06 57.0 65 46.2
HPP92_008746 Vanilla planifolia HOM05D000230 ORTHO05D000176 1.5e-06 57.0 65 43.1
EL10Ac9g22852 Beta vulgaris HOM05D000230 ORTHO05D000176 2.0e-06 56.6 91 39.6
A09p66950 Brassica napus HOM05D000230 ORTHO05D000176 2.0e-06 56.6 112 35.7
C06p45280 Brassica napus HOM05D000230 ORTHO05D000176 2.0e-06 56.6 77 44.2
C08p51190 Brassica napus HOM05D000230 ORTHO05D000176 2.0e-06 56.6 112 35.7
BolC8t52645H Brassica oleracea HOM05D000230 ORTHO05D000176 2.0e-06 56.6 112 35.7
BraA09t42030Z Brassica rapa HOM05D000230 ORTHO05D000176 2.0e-06 56.6 112 35.7
Lj6g0000597 Lotus japonicus HOM05D000230 ORTHO05D000176 2.0e-06 56.6 66 48.5
Manes.02G084900 Manihot esculenta HOM05D000230 ORTHO05D000176 2.0e-06 56.6 123 37.4
unitig_37.g12850 Utricularia gibba HOM05D000230 ORTHO05D000176 2.0e-06 56.6 65 46.2
A10p05140 Brassica napus HOM05D000230 ORTHO05D000176 2.6e-06 56.2 72 44.4
C05p04740 Brassica napus HOM05D000230 ORTHO05D000176 2.6e-06 56.2 72 44.4
BolC1t02281H Brassica oleracea HOM05D000230 ORTHO05D000176 2.6e-06 56.2 77 44.2
BolC5t29246H Brassica oleracea HOM05D000230 ORTHO05D000176 2.6e-06 56.2 72 44.4
BraA10t42781Z Brassica rapa HOM05D000230 ORTHO05D000176 2.6e-06 56.2 72 44.4
CANSAT64G1092 Cannabis sativa HOM05D000230 ORTHO05D000176 2.6e-06 56.2 107 33.6
Ca_14606_v3 Cicer arietinum L. HOM05D000230 ORTHO05D000176 2.6e-06 56.2 73 46.6
DCAR_016901 Daucus carota HOM05D000230 ORTHO05D000176 2.6e-06 56.2 65 46.2
Medtr3g047390 Medicago truncatula HOM05D000230 ORTHO05D000176 2.6e-06 56.2 73 46.6
Potri.002G058700 Populus trichocarpa HOM05D000230 ORTHO05D000176 2.6e-06 56.2 65 44.6
Potri.003G214200 Populus trichocarpa HOM05D000230 ORTHO05D000176 2.6e-06 56.2 92 40.2
Atru.chr6.2066 Acer truncatum HOM05D000230 ORTHO05D000176 3.4e-06 55.8 96 36.5
CAN.G585.25 Capsicum annuum HOM05D000230 ORTHO05D000176 3.4e-06 55.8 65 44.6
Gohir.A10G100800 Gossypium hirsutum HOM05D000230 ORTHO05D000176 3.4e-06 55.8 101 35.6
Lalb_Chr03g0041781 Lupinus albus HOM05D000230 ORTHO05D000176 3.4e-06 55.8 93 40.9
Nitab4.5_0004243g0020 Nicotiana tabacum HOM05D000230 ORTHO05D000176 3.4e-06 55.8 65 44.6
Nitab4.5_0008627g0020 Nicotiana tabacum HOM05D000230 ORTHO05D000176 3.4e-06 55.8 65 44.6
PSO541G2214 Papaver somniferum HOM05D000230 ORTHO05D000176 3.4e-06 55.8 64 42.2
PSO675G5819 Papaver somniferum HOM05D000230 ORTHO05D000176 3.4e-06 55.8 64 42.2
Sabra05G0154600 Salix brachista HOM05D000230 ORTHO05D000176 3.4e-06 55.8 65 43.1
THA.LOC104803323 Tarenaya hassleriana HOM05D000230 ORTHO05D000176 3.4e-06 55.8 117 35.9
AL1G16510 Arabidopsis lyrata HOM05D000230 ORTHO05D000176 4.5e-06 55.5 115 36.5
AT1G05570 Arabidopsis thaliana HOM05D000230 ORTHO05D000176 4.5e-06 55.5 92 39.1
Carub.0001s0488 Capsella rubella HOM05D000230 ORTHO05D000176 4.5e-06 55.5 92 39.1
CARHR005040 Cardamine hirsuta HOM05D000230 ORTHO05D000176 4.5e-06 55.5 92 39.1
Cc05_g09670 Coffea canephora HOM05D000230 ORTHO05D000176 4.5e-06 55.5 90 41.1
Thhalv10006528m.g Eutrema salsugineum HOM05D000230 ORTHO05D000176 4.5e-06 55.5 92 39.1
Gohir.D10G088100 Gossypium hirsutum HOM05D000230 ORTHO05D000176 4.5e-06 55.5 101 35.6
PSO675G2208 Papaver somniferum HOM05D000230 ORTHO05D000176 4.5e-06 55.5 114 33.3
Peaxi162Scf00111g00225 Petunia axillaris HOM05D000230 ORTHO05D000176 4.5e-06 55.5 65 43.1
Psat5g188080 Pisum sativum HOM05D000230 ORTHO05D000176 4.5e-06 55.5 73 46.6
Sp1g04410 Schrenkiella parvula HOM05D000230 ORTHO05D000176 4.5e-06 55.5 92 39.1
AT1G06490 Arabidopsis thaliana HOM05D000230 ORTHO05D000176 5.8e-06 55.1 65 44.6
BcaB02g06799 Brassica carinata HOM05D000230 ORTHO05D000176 5.8e-06 55.1 72 44.4
C05p52710 Brassica napus HOM05D000230 ORTHO05D000176 5.8e-06 55.1 94 36.2
Sp1g05250 Schrenkiella parvula HOM05D000230 ORTHO05D000176 5.8e-06 55.1 72 44.4
Hund24235 Selenicereus undatus HOM05D000230 ORTHO05D000176 5.8e-06 55.1 65 44.6
Solyc07g056260.4 Solanum lycopersicum HOM05D000230 ORTHO05D000176 5.8e-06 55.1 65 44.6
Sopen07g029620 Solanum pennellii HOM05D000230 ORTHO05D000176 5.8e-06 55.1 65 44.6
CDE07G1992 Ceratophyllum demersum HOM05D000230 ORTHO05D000176 7.6e-06 54.7 68 41.2
ClCG03G013790 Citrullus lanatus HOM05D000230 ORTHO05D000176 7.6e-06 54.7 92 39.1
MELO3C015661.2 Cucumis melo HOM05D000230 ORTHO05D000176 7.6e-06 54.7 92 39.1
CsaV3_1G042290 Cucumis sativus L. HOM05D000230 ORTHO05D000176 7.6e-06 54.7 92 39.1
RcHm_v2.0_Chr2g0151731 Rosa chinensis HOM05D000230 ORTHO05D000176 7.6e-06 54.7 96 37.5
ClCG09G022530 Citrullus lanatus HOM05D000230 ORTHO05D000176 9.9e-06 54.3 93 36.6
Haze_13519 Corylus avellana HOM05D000230 ORTHO05D000176 9.9e-06 54.3 73 45.2
MELO3C012631.2 Cucumis melo HOM05D000230 ORTHO05D000176 9.9e-06 54.3 93 36.6
CsaV3_7G022680 Cucumis sativus L. HOM05D000230 ORTHO05D000176 9.9e-06 54.3 93 36.6
DCAR_009803 Daucus carota HOM05D000230 ORTHO05D000176 9.9e-06 54.3 108 36.1
MD09G1150100 Malus domestica HOM05D000230 ORTHO05D000176 9.9e-06 54.3 61 44.3
Sed0003439 Sechium edule HOM05D000230 ORTHO05D000176 9.9e-06 54.3 91 35.2
Thecc.01G163900 Theobroma cacao HOM05D000230 ORTHO05D000176 9.9e-06 54.3 92 38.0


User provided reference genes

Program Settings