Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0530500 Oryza sativa ssp. japonica HOM05D023903 ORTHO05D030342 1.1e-223 779.6 378 100.0
Os08g0410266 Oryza sativa ssp. japonica HOM05D023903 ORTHO05D030342 3.7e-67 259.6 252 55.6
Os02g0159800 Oryza sativa ssp. japonica HOM05D023903 ORTHO05D030342 1.4e-37 161.4 333 35.1
Os11g0624400 Oryza sativa ssp. japonica HOM05D023903 ORTHO05D030342 4.9e-35 152.9 367 34.9
TAR525G0003 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.9e-18 97.8 316 27.8
TAR626G0415 Trochodendron aralioides HOM05D000151 ORTHO05D000074 4.1e-18 96.7 316 27.8
Os06g0148600 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D000074 2.5e-15 87.4 374 28.1
Sabra02G0011500 Salix brachista HOM05D000151 ORTHO05D000074 1.5e-12 78.2 394 25.4
Potri.002G014500 Populus trichocarpa HOM05D000151 ORTHO05D000074 1.7e-11 74.7 393 24.9
Os01g0660700 Oryza sativa ssp. japonica HOM05D010462 ORTHO05D012694 1.9e-10 71.2 328 25.3
Psat0s4081g0040 Pisum sativum HOM05D000151 ORTHO05D000074 2.4e-10 70.9 305 26.6
FvH4_3g27200 Fragaria vesca HOM05D008995 ORTHO05D000074 7.1e-10 69.3 180 33.3
ECA246G4358 Erigeron canadensis HOM05D000151 ORTHO05D000074 9.3e-10 68.9 330 23.9
Rhsim06G0010000 Rhododendron simsii HOM05D000151 ORTHO05D000074 9.3e-10 68.9 326 27.6
FAN11G1982 Fragaria x ananassa HOM05D008995 ORTHO05D000074 1.2e-09 68.6 180 33.3
Lj2P451T33 Lonicera japonica HOM05D000151 ORTHO05D000074 1.2e-09 68.6 310 25.8
TPR.G38135 Trifolium pratense HOM05D000151 ORTHO05D000074 1.6e-09 68.2 371 25.1
FAN28G1149 Fragaria x ananassa HOM05D000151 ORTHO05D000074 2.1e-09 67.8 194 26.8
Os06g0148700 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 2.1e-09 67.8 293 27.3
Aqoxy4G02957 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 2.7e-09 67.4 250 26.4
MD13G1035900 Malus domestica HOM05D008995 ORTHO05D000074 3.5e-09 67.0 231 27.7
FAN16G1355 Fragaria x ananassa HOM05D008995 ORTHO05D000074 4.6e-09 66.6 189 31.2
Lj2P485T10 Lonicera japonica HOM05D000151 ORTHO05D000074 4.6e-09 66.6 267 26.2
RcHm_v2.0_Chr4g0434481 Rosa chinensis HOM05D008995 ORTHO05D000074 4.6e-09 66.6 218 29.8
COL.COLO4_30702 Corchorus olitorius HOM05D003035 ORTHO05D000440 6.0e-09 66.2 215 24.2
Haze_02069 Corylus avellana HOM05D000151 ORTHO05D000074 1.0e-08 65.5 183 28.4
FAN07G1830 Fragaria x ananassa HOM05D008995 ORTHO05D000074 1.0e-08 65.5 180 32.8
MBI19_g33448_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 1.0e-08 65.5 206 26.7
MBI19_g34542_MAGBIO Magnolia biondii HOM05D007354 ORTHO05D006294 1.0e-08 65.5 191 26.2
FAN25G1763 Fragaria x ananassa HOM05D008995 ORTHO05D000074 2.3e-08 64.3 218 29.8
Lsat_1_v5_gn_3_47300 Lactuca sativa HOM05D004423 ORTHO05D005464 2.3e-08 64.3 280 23.6
Lalb_Chr23g0265911 Lupinus albus HOM05D000151 ORTHO05D000074 2.3e-08 64.3 347 24.8
Os11g0594500 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 3.0e-08 63.9 307 23.5
Thecc.04G266500 Theobroma cacao HOM05D000151 ORTHO05D000074 3.0e-08 63.9 322 26.1
MBI19_g10186_MAGBIO Magnolia biondii HOM05D007354 ORTHO05D006294 3.9e-08 63.5 191 27.7
Lj3A74T15 Lonicera japonica HOM05D000151 ORTHO05D000074 6.6e-08 62.8 189 31.2
Lj3C74T1 Lonicera japonica HOM05D000151 ORTHO05D000074 6.6e-08 62.8 201 29.4
AUR62010594 Chenopodium quinoa HOM05D000151 ORTHO05D000074 8.7e-08 62.4 213 25.4
Hma1.2p1_0032F.1_g018990 Hydrangea macrophylla HOM05D000151 ORTHO05D000074 8.7e-08 62.4 195 26.7
unitig_744.g24282 Utricularia gibba HOM05D000151 ORTHO05D000074 8.7e-08 62.4 190 26.8
Potri.004G134900 Populus trichocarpa HOM05D000151 ORTHO05D000074 1.1e-07 62.0 203 25.6
HanXRQChr15g0477851 Helianthus annuus HOM05D000151 ORTHO05D000074 1.5e-07 61.6 277 22.7
Aqoxy3G03852 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.9e-07 61.2 201 27.9
Lj2P459T34 Lonicera japonica HOM05D000151 ORTHO05D000074 1.9e-07 61.2 268 24.6
MELO3C012271.2 Cucumis melo HOM05D008995 ORTHO05D000074 2.5e-07 60.8 163 28.8
Medtr5g042230 Medicago truncatula HOM05D000151 ORTHO05D000074 2.5e-07 60.8 172 31.4
Dinv36218 Davidia involucrata HOM05D003035 ORTHO05D000440 7.3e-07 59.3 201 24.4
Os11g0594600 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 7.3e-07 59.3 267 25.5
FvH4_1g10850 Fragaria vesca HOM05D000151 ORTHO05D000074 2.1e-06 57.8 194 25.3
FAN19G1876 Fragaria x ananassa HOM05D000151 ORTHO05D000074 2.1e-06 57.8 194 25.3
Hma1.2p1_0548F.1_g176680 Hydrangea macrophylla HOM05D000151 ORTHO05D000074 2.1e-06 57.8 257 25.3
Lj2P476T17 Lonicera japonica HOM05D000151 ORTHO05D000074 2.1e-06 57.8 199 26.1
MBI19_g47417_MAGBIO Magnolia biondii HOM05D007354 ORTHO05D006294 2.1e-06 57.8 191 26.7
Lalb_Chr17g0338871 Lupinus albus HOM05D008995 ORTHO05D000074 2.8e-06 57.4 190 26.3
MBI19_g39963_MAGBIO Magnolia biondii HOM05D007354 ORTHO05D006294 2.8e-06 57.4 196 27.6
Hma1.2p1_0311F.1_g121210 Hydrangea macrophylla HOM05D000151 ORTHO05D000074 3.6e-06 57.0 315 22.9
Lj2P478T6 Lonicera japonica HOM05D000151 ORTHO05D000074 3.6e-06 57.0 199 26.1
COL.COLO4_05771 Corchorus olitorius HOM05D000151 ORTHO05D000074 4.8e-06 56.6 147 29.9
MBI18_g45941_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 4.8e-06 56.6 225 24.0
Dinv36204 Davidia involucrata HOM05D003035 ORTHO05D000440 6.2e-06 56.2 190 24.7
TWI09G0953 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 6.2e-06 56.2 177 28.8
Medtr3g029650 Medicago truncatula HOM05D000151 ORTHO05D000074 8.1e-06 55.8 151 30.5
PGSC0003DMG400023604 Solanum tuberosum HOM05D000151 ORTHO05D000074 8.1e-06 55.8 175 28.0
Zm00001eb290070 Zea mays HOM05D010462 ORTHO05D012694 8.1e-06 55.8 213 26.8


User provided reference genes

Program Settings