Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0523401 Oryza sativa ssp. japonica HOM05D004570 ORTHO05D005494 4.7e-56 221.1 122 100.0
Zm00001eb435160 Zea mays HOM05D004570 ORTHO05D005494 3.1e-47 191.8 120 92.5
Zm00001eb437170 Zea mays HOM05D004570 ORTHO05D005494 3.1e-47 191.8 120 92.5
Nn021s41531 Nelumbo nucifera HOM05D004570 ORTHO05D005494 1.4e-23 113.2 84 76.2
Nn3g19985 Nelumbo nucifera HOM05D004570 ORTHO05D005494 1.4e-23 113.2 84 76.2
PSO548G0082 Papaver somniferum HOM05D004570 ORTHO05D005494 1.4e-23 113.2 84 76.2
TAR628G1502 Trochodendron aralioides HOM05D004570 ORTHO05D005494 1.8e-23 112.8 84 75.0
RcHm_v2.0_CPg0502011 Rosa chinensis HOM05D004570 ORTHO05D005494 4.4e-22 108.2 85 74.1
CAN.G1148.10 Capsicum annuum HOM05D004570 ORTHO05D005494 9.9e-22 107.1 84 73.8
CAN.G1314.4 Capsicum annuum HOM05D004570 ORTHO05D005494 9.9e-22 107.1 84 73.8
CAN.G2018.14 Capsicum annuum HOM05D004570 ORTHO05D005494 9.9e-22 107.1 84 73.8
CAN.G2018.6 Capsicum annuum HOM05D004570 ORTHO05D005494 9.9e-22 107.1 84 73.8
CAN.G3365.4 Capsicum annuum HOM05D004570 ORTHO05D005494 9.9e-22 107.1 84 73.8
CAN.G438.84 Capsicum annuum HOM05D004570 ORTHO05D005494 9.9e-22 107.1 84 73.8
Lalb_Chr07g0192071 Lupinus albus HOM05D004570 ORTHO05D005494 9.9e-22 107.1 78 74.4
Solyc00g500022.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 9.9e-22 107.1 84 73.8
Sopen07g012410 Solanum pennellii HOM05D004570 ORTHO05D005494 9.9e-22 107.1 84 73.8
PGSC0003DMG400044817 Solanum tuberosum HOM05D004570 ORTHO05D005494 9.9e-22 107.1 84 73.8
PGSC0003DMG400045454 Solanum tuberosum HOM05D004570 ORTHO05D005494 9.9e-22 107.1 84 73.8
PGSC0003DMG401022617 Solanum tuberosum HOM05D004570 ORTHO05D005494 9.9e-22 107.1 84 73.8
BolSC47t61087H Brassica oleracea HOM05D004570 ORTHO05D005494 1.7e-21 106.3 86 70.9
MELO3C001309.2 Cucumis melo HOM05D004570 ORTHO05D005494 2.2e-21 105.9 84 72.6
MELO3C028029.2 Cucumis melo HOM05D004570 ORTHO05D005494 2.2e-21 105.9 84 72.6
MELO3C028120.2 Cucumis melo HOM05D004570 ORTHO05D005494 2.2e-21 105.9 84 72.6
DCAR_032506 Daucus carota HOM05D004570 ORTHO05D005494 2.2e-21 105.9 84 72.6
PGR111G0035 Punica granatum HOM05D004570 ORTHO05D005494 2.2e-21 105.9 78 74.4
Gohir.A12G229466 Gossypium hirsutum HOM05D004570 ORTHO05D005494 3.8e-21 105.1 84 72.6
Gorai.010G129700 Gossypium raimondii HOM05D004570 ORTHO05D005494 3.8e-21 105.1 84 72.6
RcHm_v2.0_Chr6g0260411 Rosa chinensis HOM05D004570 ORTHO05D005494 3.8e-21 105.1 85 72.9
Gohir.A04G059000 Gossypium hirsutum HOM05D004570 ORTHO05D005494 4.9e-21 104.8 84 69.0
Sed0017454 Sechium edule HOM05D004570 ORTHO05D005494 4.9e-21 104.8 70 81.4
ATCG00650 Arabidopsis thaliana HOM05D004570 ORTHO05D005494 6.4e-21 104.4 85 70.6
C06p22960 Brassica napus HOM05D004570 ORTHO05D005494 6.4e-21 104.4 85 70.6
BolSC29t60597H Brassica oleracea HOM05D004570 ORTHO05D005494 6.4e-21 104.4 85 70.6
BolSC35t60657H Brassica oleracea HOM05D004570 ORTHO05D005494 6.4e-21 104.4 85 70.6
BolSC46t61008H Brassica oleracea HOM05D004570 ORTHO05D005494 6.4e-21 104.4 85 70.6
BraA06t25415Z Brassica rapa HOM05D004570 ORTHO05D005494 6.4e-21 104.4 85 70.6
BraSC138t45566Z Brassica rapa HOM05D004570 ORTHO05D005494 6.4e-21 104.4 85 70.6
BraSC25t45856Z Brassica rapa HOM05D004570 ORTHO05D005494 6.4e-21 104.4 85 70.6
BraSC58t46431Z Brassica rapa HOM05D004570 ORTHO05D005494 6.4e-21 104.4 85 70.6
CARHR282160 Cardamine hirsuta HOM05D004570 ORTHO05D005494 6.4e-21 104.4 85 70.6
Gohir.A11G230402 Gossypium hirsutum HOM05D004570 ORTHO05D005494 8.4e-21 104.0 86 68.6
Gohir.D12G107900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 8.4e-21 104.0 84 71.4
HanXRQChr01g0004801 Helianthus annuus HOM05D004570 ORTHO05D005494 1.1e-20 103.6 70 80.0
HanXRQChr01g0020301 Helianthus annuus HOM05D004570 ORTHO05D005494 1.1e-20 103.6 70 80.0
HanXRQChr02g0041611 Helianthus annuus HOM05D004570 ORTHO05D005494 1.1e-20 103.6 70 80.0
HanXRQChr02g0044851 Helianthus annuus HOM05D004570 ORTHO05D005494 1.1e-20 103.6 70 80.0
HanXRQChr10g0283601 Helianthus annuus HOM05D004570 ORTHO05D005494 1.1e-20 103.6 70 80.0
HanXRQChr10g0284291 Helianthus annuus HOM05D004570 ORTHO05D005494 1.1e-20 103.6 70 80.0
HanXRQChr10g0289311 Helianthus annuus HOM05D004570 ORTHO05D005494 1.1e-20 103.6 70 80.0
HanXRQChr10g0318151 Helianthus annuus HOM05D004570 ORTHO05D005494 1.1e-20 103.6 70 80.0
HanXRQChr11g0326881 Helianthus annuus HOM05D004570 ORTHO05D005494 1.1e-20 103.6 70 80.0
HanXRQCPg0580091 Helianthus annuus HOM05D004570 ORTHO05D005494 1.1e-20 103.6 70 80.0
CAN.G561.9 Capsicum annuum HOM05D004570 ORTHO05D005494 1.4e-20 103.2 84 70.2
HanXRQChr04g0095121 Helianthus annuus HOM05D004570 ORTHO05D005494 1.4e-20 103.2 70 80.0
C02p28720 Brassica napus HOM05D004570 ORTHO05D005494 1.9e-20 102.8 85 69.4
C06p23030 Brassica napus HOM05D004570 ORTHO05D005494 1.9e-20 102.8 85 69.4
BolC2t08922H Brassica oleracea HOM05D004570 ORTHO05D005494 1.9e-20 102.8 85 69.4
Ciclev10003202m.g Citrus clementina HOM05D004570 ORTHO05D005494 3.2e-20 102.1 75 72.0
HanXRQChr04g0094281 Helianthus annuus HOM05D004570 ORTHO05D005494 3.2e-20 102.1 70 78.6
AL2G21620 Arabidopsis lyrata HOM05D004570 ORTHO05D005494 4.2e-20 101.7 70 78.6
arahy.Tifrunner.gnm1.ann1.0J98KG Arachis hypogaea HOM05D004570 ORTHO05D005494 5.4e-20 101.3 75 74.7
arahy.Tifrunner.gnm1.ann1.JZHZ2W Arachis hypogaea HOM05D004570 ORTHO05D005494 5.4e-20 101.3 75 74.7
Lj1g0020553 Lotus japonicus HOM05D004570 ORTHO05D005494 5.4e-20 101.3 75 73.3
LjContig00318g0015790 Lotus japonicus HOM05D004570 ORTHO05D005494 5.4e-20 101.3 75 73.3
Phvul.002G090511 Phaseolus vulgaris HOM05D004570 ORTHO05D005494 7.1e-20 100.9 88 69.3
BolSC49t61173H Brassica oleracea HOM05D004570 ORTHO05D005494 1.6e-19 99.8 80 70.0
Glyma.12G232200 Glycine max HOM05D004570 ORTHO05D005494 1.6e-19 99.8 88 67.0
Lalb_Chr23g0274341 Lupinus albus HOM05D004570 ORTHO05D005494 4.6e-19 98.2 65 80.0
Gohir.D06G113675 Gossypium hirsutum HOM05D004570 ORTHO05D005494 7.9e-19 97.4 64 82.8
Glyma.15G238900 Glycine max HOM05D004570 ORTHO05D005494 1.0e-18 97.1 102 59.8
Gorai.006G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 1.3e-18 96.7 62 85.5
Lj2P1239T137 Lonicera japonica HOM05D004570 ORTHO05D005494 1.3e-18 96.7 86 66.3
Lj2P1237T61 Lonicera japonica HOM05D004570 ORTHO05D005494 3.0e-18 95.5 73 72.6
Gohir.A01G178208 Gossypium hirsutum HOM05D004570 ORTHO05D005494 3.9e-18 95.1 84 63.1
Gohir.A04G042801 Gossypium hirsutum HOM05D004570 ORTHO05D005494 8.7e-18 94.0 77 64.9
Gorai.001G196600 Gossypium raimondii HOM05D004570 ORTHO05D005494 8.7e-18 94.0 68 76.5
BolC6t36198H Brassica oleracea HOM05D004570 ORTHO05D005494 1.1e-17 93.6 85 65.9
Hund04053 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund07983 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund08573 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund08807 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund20237 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund22775 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund27463 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund27482 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund27573 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund27596 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund27877 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund27896 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund27980 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund28050 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund28104 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund28263 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund28454 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund28470 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund28489 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund28514 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund28525 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund28627 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund28673 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund28719 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund28741 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund28753 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund28842 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund28891 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund29139 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund29177 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund29360 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund29465 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund29622 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund29704 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund29708 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund29718 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund29725 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund29808 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund29832 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund29833 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund29856 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund29864 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund29940 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund30026 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund30252 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund30318 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund30479 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund30523 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Hund30577 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.1e-17 93.6 100 57.0
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 9.6e-17 90.5 61 75.4
Hund15803 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.6e-16 89.7 75 66.7
Gohir.A01G178244 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.1e-16 89.4 84 61.9
Gohir.A09G109900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.1e-16 89.4 86 60.5
CAN.G1753.2 Capsicum annuum HOM05D004570 ORTHO05D005494 2.8e-16 89.0 86 59.3
Solyc01g017085.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 4.0e-15 85.1 58 74.1
Gohir.D01G101982 Gossypium hirsutum HOM05D004570 ORTHO05D005494 5.3e-15 84.7 69 72.5
BNapus_Darmor_BZH_scaffold_287p00190 Brassica napus HOM05D004570 ORTHO05D005494 9.0e-15 84.0 70 70.0
C02p43580 Brassica napus HOM05D004570 ORTHO05D005494 9.0e-15 84.0 70 70.0
BolSC29t60476H Brassica oleracea HOM05D004570 ORTHO05D005494 9.0e-15 84.0 70 70.0
HanXRQChr00c0314g0573531 Helianthus annuus HOM05D004570 ORTHO05D005494 9.0e-15 84.0 55 83.6
HanXRQChr02g0052581 Helianthus annuus HOM05D004570 ORTHO05D005494 9.0e-15 84.0 55 83.6
Lalb_Chr18g0049721 Lupinus albus HOM05D004570 ORTHO05D005494 2.0e-14 82.8 55 83.6
Eucgr.E01044 Eucalyptus grandis HOM05D004570 ORTHO05D005494 5.8e-14 81.3 67 71.6
CSS0008162 Camellia sinensis var. sinensis HOM05D004570 ORTHO05D005494 7.6e-14 80.9 61 73.8
Gorai.001G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 4.9e-13 78.2 71 63.4
GSVIVG01023557001 Vitis vinifera HOM05D000092 ORTHO05D000042 1.4e-12 76.6 48 85.4
Lalb_Chr23g0274801 Lupinus albus HOM05D004570 ORTHO05D005494 2.1e-11 72.8 55 74.5
BraSC103t45456Z Brassica rapa HOM05D004570 ORTHO05D005494 6.0e-11 71.2 85 55.3
Eucgr.A00291 Eucalyptus grandis HOM05D004570 ORTHO05D005494 1.0e-10 70.5 43 81.4
EL10Ac7g17378 Beta vulgaris HOM05D004570 ORTHO05D005494 1.8e-10 69.7 43 81.4
HanXRQChr11g0345201 Helianthus annuus HOM05D004570 ORTHO05D005494 9.6e-09 63.9 42 76.2
Lalb_Chr20g0115501 Lupinus albus HOM05D004570 ORTHO05D005494 1.1e-07 60.5 40 75.0
arahy.Tifrunner.gnm1.ann1.RCVY9V Arachis hypogaea HOM05D000540 ORTHO05D000681 4.0e-07 58.5 42 78.6
SMO086G0030 Selaginella moellendorffii HOM05D004570 ORTHO05D005494 4.0e-07 58.5 54 53.7
arahy.Tifrunner.gnm1.ann1.S91IH0 Arachis hypogaea HOM05D004570 ORTHO05D005494 7.6e-06 54.3 38 73.7


User provided reference genes

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