Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0509750 Oryza sativa ssp. japonica HOM05D000065 ORTHO05D293655 5.3e-75 284.3 142 100.0
Os10g0463200 Oryza sativa ssp. japonica HOM05D000065 ORTHO05D000758 9.2e-11 70.9 57 66.7
Glyma.09G241400 Glycine max HOM05D000065 ORTHO05D000758 9.5e-08 60.8 59 54.2
Lalb_Chr02g0149291 Lupinus albus HOM05D000065 ORTHO05D000758 1.2e-07 60.5 60 51.7
Medtr7g008060 Medicago truncatula HOM05D000065 ORTHO05D000758 1.2e-07 60.5 59 52.5
ECA238G0628 Erigeron canadensis HOM05D000065 ORTHO05D000758 1.6e-07 60.1 56 55.4
Zm00001eb046570 Zea mays HOM05D000065 ORTHO05D000758 1.6e-07 60.1 56 57.1
Ciclev10033835m.g Citrus clementina HOM05D000065 ORTHO05D000758 2.1e-07 59.7 60 53.3
arahy.Tifrunner.gnm1.ann1.59PC4W Arachis hypogaea HOM05D000065 ORTHO05D000758 2.8e-07 59.3 57 54.4
FvH4_6g01380 Fragaria vesca HOM05D000065 ORTHO05D000758 3.6e-07 58.9 59 50.8
FAN09G0434 Fragaria x ananassa HOM05D000065 ORTHO05D000758 3.6e-07 58.9 59 50.8
FAN14G4332 Fragaria x ananassa HOM05D000065 ORTHO05D000758 3.6e-07 58.9 59 50.8
FAN14G4685 Fragaria x ananassa HOM05D000065 ORTHO05D000758 3.6e-07 58.9 59 50.8
Lalb_Chr18g0044091 Lupinus albus HOM05D000065 ORTHO05D000758 3.6e-07 58.9 60 50.0
Phvul.004G066500 Phaseolus vulgaris HOM05D000065 ORTHO05D000758 3.6e-07 58.9 57 52.6
Medtr1g079540 Medicago truncatula HOM05D000065 ORTHO05D000758 4.7e-07 58.5 60 50.0
Medtr7g116520 Medicago truncatula HOM05D000065 ORTHO05D000758 4.7e-07 58.5 60 48.3
VMungo0464G1161 Vigna mungo HOM05D000065 ORTHO05D000758 4.7e-07 58.5 57 52.6
Eucgr.H04197 Eucalyptus grandis HOM05D000065 ORTHO05D000758 6.1e-07 58.2 60 51.7
Eucgr.K03589 Eucalyptus grandis HOM05D000065 ORTHO05D000758 6.1e-07 58.2 61 47.5
Glyma.13G044500 Glycine max HOM05D000065 ORTHO05D000758 6.1e-07 58.2 57 54.4
Lalb_Chr21g0317751 Lupinus albus HOM05D000065 ORTHO05D000758 6.1e-07 58.2 57 50.9
Nitab4.5_0001989g0050 Nicotiana tabacum HOM05D000065 ORTHO05D000758 6.1e-07 58.2 56 53.6
Nitab4.5_0009809g0020 Nicotiana tabacum HOM05D000065 ORTHO05D000758 6.1e-07 58.2 59 50.8
THA.LOC104805740 Tarenaya hassleriana HOM05D000065 ORTHO05D000758 6.1e-07 58.2 56 50.0
TPR.G4807 Trifolium pratense HOM05D000065 ORTHO05D000758 6.1e-07 58.2 60 48.3
ECA238G1137 Erigeron canadensis HOM05D000065 ORTHO05D000758 8.0e-07 57.8 59 49.2
Glyma.18G254800 Glycine max HOM05D000065 ORTHO05D000758 8.0e-07 57.8 59 50.8
Lj1g0010170 Lotus japonicus HOM05D000065 ORTHO05D000758 8.0e-07 57.8 59 50.8
VMungo0464G1168 Vigna mungo HOM05D000065 ORTHO05D000758 8.0e-07 57.8 57 52.6
VMungo0540G1374 Vigna mungo HOM05D000065 ORTHO05D000758 8.0e-07 57.8 60 50.0
arahy.Tifrunner.gnm1.ann1.0C0TPY Arachis hypogaea HOM05D000065 ORTHO05D000758 1.0e-06 57.4 57 50.9
FAN02G2782 Fragaria x ananassa HOM05D000065 ORTHO05D000758 1.0e-06 57.4 59 50.8
FAN05G1758 Fragaria x ananassa HOM05D000065 ORTHO05D000758 1.0e-06 57.4 59 50.8
Glyma.05G116300 Glycine max HOM05D000065 ORTHO05D000758 1.0e-06 57.4 57 52.6
Glyma.19G050800 Glycine max HOM05D000065 ORTHO05D000758 1.0e-06 57.4 57 52.6
Glyma.19G050900 Glycine max HOM05D000065 ORTHO05D000758 1.0e-06 57.4 57 52.6
Lj1g0011864 Lotus japonicus HOM05D000065 ORTHO05D000758 1.0e-06 57.4 60 51.7
QL03p032819 Quercus lobata HOM05D000065 ORTHO05D000758 1.0e-06 57.4 60 50.0
Sp7g07670 Schrenkiella parvula HOM05D000065 ORTHO05D000758 1.0e-06 57.4 60 46.7
TPR.G4251 Trifolium pratense HOM05D000065 ORTHO05D000758 1.0e-06 57.4 57 50.9
TWI60G0299 Tripterygium wilfordii HOM05D000065 ORTHO05D000758 1.0e-06 57.4 59 50.8
arahy.Tifrunner.gnm1.ann1.P3FI0J Arachis hypogaea HOM05D000065 ORTHO05D000758 1.4e-06 57.0 74 44.6
arahy.Tifrunner.gnm1.ann1.WLS58Y Arachis hypogaea HOM05D000065 ORTHO05D000758 1.4e-06 57.0 73 45.2
Carub.0007s3062 Capsella rubella HOM05D000065 ORTHO05D000758 1.4e-06 57.0 60 45.0
Ciclev10020709m.g Citrus clementina HOM05D000065 ORTHO05D000758 1.4e-06 57.0 56 51.8
Glyma.19G051100 Glycine max HOM05D000065 ORTHO05D000758 1.4e-06 57.0 57 50.9
Manes.09G145800 Manihot esculenta HOM05D000065 ORTHO05D000758 1.4e-06 57.0 57 49.1
Nn1g03085 Nelumbo nucifera HOM05D000065 ORTHO05D000758 1.4e-06 57.0 59 49.2
Nn3g19855 Nelumbo nucifera HOM05D000065 ORTHO05D000758 1.4e-06 57.0 59 47.5
THA.LOC104807076 Tarenaya hassleriana HOM05D000065 ORTHO05D000758 1.4e-06 57.0 61 45.9
Aqoxy3G00576 Aquilegia oxysepala HOM05D000065 ORTHO05D000758 1.8e-06 56.6 60 48.3
Migut.F02046 Erythranthe guttata HOM05D000065 ORTHO05D000758 1.8e-06 56.6 59 49.2
Gohir.D13G106400 Gossypium hirsutum HOM05D000065 ORTHO05D000758 1.8e-06 56.6 59 50.8
Manes.08G142411 Manihot esculenta HOM05D000065 ORTHO05D000758 1.8e-06 56.6 56 51.8
Potri.002G253400 Populus trichocarpa HOM05D000065 ORTHO05D000758 1.8e-06 56.6 60 50.0
TPR.G4767 Trifolium pratense HOM05D000065 ORTHO05D000758 1.8e-06 56.6 62 46.8
VMungo0464G1576 Vigna mungo HOM05D000065 ORTHO05D000758 1.8e-06 56.6 57 50.9
VMungo1383G3005 Vigna mungo HOM05D000065 ORTHO05D000758 1.8e-06 56.6 59 47.5
Aqoxy5G00055 Aquilegia oxysepala HOM05D000065 ORTHO05D000758 2.3e-06 56.2 59 49.2
CSS0014773 Camellia sinensis var. sinensis HOM05D000065 ORTHO05D000758 2.3e-06 56.2 60 48.3
FAN05G1259 Fragaria x ananassa HOM05D000065 ORTHO05D000758 2.3e-06 56.2 59 49.2
Glyma.03G252600 Glycine max HOM05D000065 ORTHO05D000758 2.3e-06 56.2 60 50.0
Glyma.13G045100 Glycine max HOM05D000065 ORTHO05D000758 2.3e-06 56.2 57 50.9
HanXRQChr14g0433411 Helianthus annuus HOM05D000065 ORTHO05D000758 2.3e-06 56.2 59 47.5
Manes.09G145900 Manihot esculenta HOM05D000065 ORTHO05D000758 2.3e-06 56.2 56 51.8
Phvul.004G066300 Phaseolus vulgaris HOM05D000065 ORTHO05D000758 2.3e-06 56.2 57 50.9
Phvul.004G066600 Phaseolus vulgaris HOM05D000065 ORTHO05D000758 2.3e-06 56.2 57 50.9
Phvul.006G107300 Phaseolus vulgaris HOM05D000065 ORTHO05D000758 2.3e-06 56.2 59 49.2
Phvul.008G044500 Phaseolus vulgaris HOM05D000065 ORTHO05D000758 2.3e-06 56.2 59 45.8
Psat3g005680 Pisum sativum HOM05D000065 ORTHO05D000758 2.3e-06 56.2 60 46.7
VMungo0720G2418 Vigna mungo HOM05D000065 ORTHO05D000758 2.3e-06 56.2 60 50.0
arahy.Tifrunner.gnm1.ann1.GU9EZ6 Arachis hypogaea HOM05D000065 ORTHO05D000758 3.0e-06 55.8 57 50.9
arahy.Tifrunner.gnm1.ann1.M8T1EX Arachis hypogaea HOM05D000065 ORTHO05D000758 3.0e-06 55.8 57 50.9
arahy.Tifrunner.gnm1.ann1.MA2MA7 Arachis hypogaea HOM05D000065 ORTHO05D000758 3.0e-06 55.8 57 50.9
BcaB04g18087 Brassica carinata HOM05D000065 ORTHO05D000758 3.0e-06 55.8 60 45.0
BcaC07g37709 Brassica carinata HOM05D000065 ORTHO05D000758 3.0e-06 55.8 60 45.0
A08p10080 Brassica napus HOM05D000065 ORTHO05D000758 3.0e-06 55.8 60 45.0
BraA08t33005Z Brassica rapa HOM05D000065 ORTHO05D000758 3.0e-06 55.8 60 45.0
CSS0026875 Camellia sinensis var. sinensis HOM05D000065 ORTHO05D000758 3.0e-06 55.8 50 56.0
CARHR217070 Cardamine hirsuta HOM05D000065 ORTHO05D000758 3.0e-06 55.8 60 45.0
Cpa.g.sc51.28 Carica papaya HOM05D000065 ORTHO05D000758 3.0e-06 55.8 56 50.0
Thhalv10003456m.g Eutrema salsugineum HOM05D000065 ORTHO05D000758 3.0e-06 55.8 60 45.0
Glyma.19G051000 Glycine max HOM05D000065 ORTHO05D000758 3.0e-06 55.8 57 50.9
Lsat_1_v5_gn_2_15680 Lactuca sativa HOM05D000065 ORTHO05D000758 3.0e-06 55.8 59 49.2
Potri.019G024600 Populus trichocarpa HOM05D000065 ORTHO05D000758 3.0e-06 55.8 56 50.0
QL03p032865 Quercus lobata HOM05D000065 ORTHO05D000758 3.0e-06 55.8 57 47.4
Sed0002583 Sechium edule HOM05D000065 ORTHO05D000758 3.0e-06 55.8 59 49.2
Zm00001eb191480 Zea mays HOM05D000065 ORTHO05D000758 3.0e-06 55.8 66 45.5
AL7G43720 Arabidopsis lyrata HOM05D000065 ORTHO05D000758 4.0e-06 55.5 60 45.0
AT5G33370 Arabidopsis thaliana HOM05D000065 ORTHO05D000758 4.0e-06 55.5 60 45.0
MSTRG.8174 Avicennia marina HOM05D000065 ORTHO05D000758 4.0e-06 55.5 54 51.9
MSTRG.9221 Avicennia marina HOM05D000065 ORTHO05D000758 4.0e-06 55.5 59 50.8
EL10Ac7g17759 Beta vulgaris HOM05D000065 ORTHO05D000758 4.0e-06 55.5 73 45.2
CiPaw.07G076400 Carya illinoinensis HOM05D000065 ORTHO05D000758 4.0e-06 55.5 59 47.5
Haze_04480 Corylus avellana HOM05D000065 ORTHO05D000758 4.0e-06 55.5 56 53.6
Dinv09888 Davidia involucrata HOM05D000065 ORTHO05D000758 4.0e-06 55.5 56 48.2
MD12G1252200 Malus domestica HOM05D000065 ORTHO05D000758 4.0e-06 55.5 59 49.2
Medtr7g116570 Medicago truncatula HOM05D000065 ORTHO05D000758 4.0e-06 55.5 57 50.9
Rhsim09G0132200 Rhododendron simsii HOM05D000065 ORTHO05D000758 4.0e-06 55.5 57 50.9
Sc16g0010010 Simmondsia chinensis HOM05D000065 ORTHO05D000758 4.0e-06 55.5 57 49.1
Thecc.05G265400 Theobroma cacao HOM05D000065 ORTHO05D000758 4.0e-06 55.5 60 48.3
TPR.G4791 Trifolium pratense HOM05D000065 ORTHO05D000758 4.0e-06 55.5 60 50.0
TWI60G0772 Tripterygium wilfordii HOM05D000065 ORTHO05D000758 4.0e-06 55.5 55 52.7
VMungo0540G1892 Vigna mungo HOM05D000065 ORTHO05D000758 4.0e-06 55.5 56 50.0
GSVIVG01026341001 Vitis vinifera HOM05D000065 ORTHO05D000758 4.0e-06 55.5 60 46.7
Aqoxy6G01928 Aquilegia oxysepala HOM05D000065 ORTHO05D000758 5.2e-06 55.1 56 48.2
Duzib106G1626 Durio zibethinus HOM05D000065 ORTHO05D000758 5.2e-06 55.1 59 50.8
Glyma.03G252700 Glycine max HOM05D000065 ORTHO05D000758 5.2e-06 55.1 60 46.7
Glyma.03G252800 Glycine max HOM05D000065 ORTHO05D000758 5.2e-06 55.1 56 48.2
Glyma.19G050000 Glycine max HOM05D000065 ORTHO05D000758 5.2e-06 55.1 57 50.9
Glyma.19G250400 Glycine max HOM05D000065 ORTHO05D000758 5.2e-06 55.1 56 48.2
Glyma.20G221200 Glycine max HOM05D000065 ORTHO05D000758 5.2e-06 55.1 60 46.7
HanXRQChr08g0233251 Helianthus annuus HOM05D000065 ORTHO05D000758 5.2e-06 55.1 59 49.2
HanXRQChr14g0455451 Helianthus annuus HOM05D000065 ORTHO05D000758 5.2e-06 55.1 56 50.0
Lalb_Chr21g0317761 Lupinus albus HOM05D000065 ORTHO05D000758 5.2e-06 55.1 55 50.9
Manes.08G142400 Manihot esculenta HOM05D000065 ORTHO05D000758 5.2e-06 55.1 59 49.2
Psat0s1560g0080 Pisum sativum HOM05D000065 ORTHO05D000758 5.2e-06 55.1 58 48.3
QL09p043901 Quercus lobata HOM05D000065 ORTHO05D000758 5.2e-06 55.1 60 43.3
QL09p043916 Quercus lobata HOM05D000065 ORTHO05D000758 5.2e-06 55.1 60 46.7
TPR.G21642 Trifolium pratense HOM05D000065 ORTHO05D000758 5.2e-06 55.1 57 47.4
TAR636G2078 Trochodendron aralioides HOM05D002889 ORTHO05D003366 5.2e-06 55.1 59 47.5
Atru.chr2.1131 Acer truncatum HOM05D000065 ORTHO05D000758 6.8e-06 54.7 59 47.5
Actinidia06825 Actinidia chinensis HOM05D000065 ORTHO05D000758 6.8e-06 54.7 59 47.5
Ah.15g093410 Amaranthus hybridus HOM05D000065 ORTHO05D000758 6.8e-06 54.7 57 50.9
arahy.Tifrunner.gnm1.ann1.44UP18 Arachis hypogaea HOM05D000065 ORTHO05D000758 6.8e-06 54.7 60 48.3
arahy.Tifrunner.gnm1.ann1.ZE3K9N Arachis hypogaea HOM05D000065 ORTHO05D000758 6.8e-06 54.7 60 46.7
Cc02_g09150 Coffea canephora HOM05D000065 ORTHO05D000758 6.8e-06 54.7 56 51.8
Lsat_1_v5_gn_2_107421 Lactuca sativa HOM05D000065 ORTHO05D000758 6.8e-06 54.7 56 48.2
MD04G1234700 Malus domestica HOM05D000065 ORTHO05D000758 6.8e-06 54.7 74 44.6
Medtr1g024890 Medicago truncatula HOM05D000065 ORTHO05D000758 6.8e-06 54.7 60 45.0
Medtr7g116510 Medicago truncatula HOM05D000065 ORTHO05D000758 6.8e-06 54.7 61 47.5
Phvul.006G107200 Phaseolus vulgaris HOM05D000065 ORTHO05D000758 6.8e-06 54.7 64 48.4
Phvul.006G107400 Phaseolus vulgaris HOM05D000065 ORTHO05D000758 6.8e-06 54.7 56 48.2
Phvul.010G005800 Phaseolus vulgaris HOM05D000065 ORTHO05D000758 6.8e-06 54.7 55 50.9
Phvul.L002332 Phaseolus vulgaris HOM05D000065 ORTHO05D000758 6.8e-06 54.7 60 48.3
SEGI_17036 Sequoiadendron giganteum HOM05D000065 ORTHO05D000758 6.8e-06 54.7 60 48.3
Solyc04g050730.3 Solanum lycopersicum HOM05D000065 ORTHO05D000758 6.8e-06 54.7 57 47.4
Sopen04g021640 Solanum pennellii HOM05D000065 ORTHO05D000758 6.8e-06 54.7 57 47.4
PGSC0003DMG400028701 Solanum tuberosum HOM05D000065 ORTHO05D000758 6.8e-06 54.7 57 47.4
TWI34G1031 Tripterygium wilfordii HOM05D000065 ORTHO05D000758 6.8e-06 54.7 56 51.8
HPP92_026008 Vanilla planifolia HOM05D000065 ORTHO05D000758 6.8e-06 54.7 59 47.5
CARHR236570 Cardamine hirsuta HOM05D000065 ORTHO05D000758 8.9e-06 54.3 60 46.7
AUR62008855 Chenopodium quinoa HOM05D000065 ORTHO05D000758 8.9e-06 54.3 74 41.9
AUR62025391 Chenopodium quinoa HOM05D000065 ORTHO05D000758 8.9e-06 54.3 74 41.9
ECA232G3567 Erigeron canadensis HOM05D000065 ORTHO05D000758 8.9e-06 54.3 60 45.0
Eucgr.B02163 Eucalyptus grandis HOM05D000065 ORTHO05D000758 8.9e-06 54.3 59 49.2
Thhalv10025523m.g Eutrema salsugineum HOM05D000065 ORTHO05D000758 8.9e-06 54.3 60 48.3
Glyma.19G250100 Glycine max HOM05D000065 ORTHO05D000758 8.9e-06 54.3 60 48.3
Gohir.1Z049373 Gossypium hirsutum HOM05D000065 ORTHO05D000758 8.9e-06 54.3 56 48.2
Gohir.A08G217900 Gossypium hirsutum HOM05D000065 ORTHO05D000758 8.9e-06 54.3 59 49.2
Gohir.A11G243366 Gossypium hirsutum HOM05D000065 ORTHO05D000758 8.9e-06 54.3 56 48.2
Gohir.D08G234900 Gossypium hirsutum HOM05D000065 ORTHO05D000758 8.9e-06 54.3 59 49.2
Gohir.D11G253000 Gossypium hirsutum HOM05D000065 ORTHO05D000758 8.9e-06 54.3 56 48.2
Gorai.004G249700 Gossypium raimondii HOM05D000065 ORTHO05D000758 8.9e-06 54.3 59 49.2
Gorai.007G271700 Gossypium raimondii HOM05D000065 ORTHO05D000758 8.9e-06 54.3 56 48.2
HanXRQChr07g0194511 Helianthus annuus HOM05D000065 ORTHO05D000758 8.9e-06 54.3 53 54.7
Lsat_1_v5_gn_2_107300 Lactuca sativa HOM05D000065 ORTHO05D000758 8.9e-06 54.3 60 46.7
Lsat_1_v5_gn_2_15760 Lactuca sativa HOM05D000065 ORTHO05D000758 8.9e-06 54.3 59 49.2
Lj4C549T0 Lonicera japonica HOM05D000065 ORTHO05D000758 8.9e-06 54.3 56 48.2
Lj4C550T6 Lonicera japonica HOM05D000065 ORTHO05D000758 8.9e-06 54.3 59 45.8
Lj4C578T2 Lonicera japonica HOM05D000065 ORTHO05D000758 8.9e-06 54.3 59 45.8
Lj4C578T4 Lonicera japonica HOM05D000065 ORTHO05D000758 8.9e-06 54.3 59 45.8
Lju41C6T1 Lonicera japonica HOM05D000065 ORTHO05D000758 8.9e-06 54.3 56 46.4
PSO339G6154 Papaver somniferum HOM05D000065 ORTHO05D000758 8.9e-06 54.3 60 48.3
Rhsim05G0169200 Rhododendron simsii HOM05D000065 ORTHO05D000758 8.9e-06 54.3 58 48.3
Sabra02G0192500 Salix brachista HOM05D000065 ORTHO05D000758 8.9e-06 54.3 60 46.7
Sabra19G0034300 Salix brachista HOM05D000065 ORTHO05D000758 8.9e-06 54.3 56 48.2
Hund05499 Selenicereus undatus HOM05D000065 ORTHO05D000758 8.9e-06 54.3 57 47.4
Sc09g0001790 Simmondsia chinensis HOM05D000065 ORTHO05D000758 8.9e-06 54.3 60 46.7
Sc16g0010020 Simmondsia chinensis HOM05D000065 ORTHO05D000758 8.9e-06 54.3 57 49.1
THA.LOC104827280 Tarenaya hassleriana HOM05D000065 ORTHO05D000758 8.9e-06 54.3 59 47.5
TWI34G0102 Tripterygium wilfordii HOM05D000065 ORTHO05D000758 8.9e-06 54.3 55 49.1
VMungo0540G2106 Vigna mungo HOM05D000065 ORTHO05D000758 8.9e-06 54.3 60 48.3


User provided reference genes

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