Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0388500 Oryza sativa ssp. japonica HOM05D002930 ORTHO05D003283 2.1e-157 558.9 268 100.0
Nn3g21179 Nelumbo nucifera HOM05D002930 ORTHO05D003283 2.3e-108 396.0 265 70.9
HPP92_025233 Vanilla planifolia HOM05D002930 ORTHO05D003283 5.8e-107 391.3 262 71.4
ATR0626G265 Amborella trichopoda HOM05D002930 ORTHO05D003283 7.5e-107 391.0 265 70.2
Aqoxy2G03186 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 8.3e-106 387.5 263 69.2
Eucgr.B02004 Eucalyptus grandis HOM05D002930 ORTHO05D003283 1.4e-105 386.7 265 70.6
Aqoxy5G00565 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 1.9e-105 386.3 268 68.3
Migut.N02138 Erythranthe guttata HOM05D002930 ORTHO05D003283 5.4e-105 384.8 270 67.4
CDE08G1581 Ceratophyllum demersum HOM05D002930 ORTHO05D003283 4.6e-104 381.7 264 69.7
TAR365G0233 Trochodendron aralioides HOM05D002930 ORTHO05D003283 4.6e-104 381.7 265 69.8
Lalb_Chr04g0260861 Lupinus albus HOM05D002930 ORTHO05D003283 7.8e-104 380.9 268 68.7
Potri.005G037700 Populus trichocarpa HOM05D002930 ORTHO05D003283 1.7e-103 379.8 268 68.7
Sabra05G0038400 Salix brachista HOM05D002930 ORTHO05D003283 1.7e-103 379.8 268 69.0
GSVIVG01022038001 Vitis vinifera HOM05D002930 ORTHO05D003283 1.7e-103 379.8 265 68.3
MBI19_g21645_MAGBIO Magnolia biondii HOM05D002930 ORTHO05D003283 2.3e-103 379.4 264 70.5
Ca_09379_v3 Cicer arietinum L. HOM05D002930 ORTHO05D003283 5.1e-103 378.3 270 66.3
Duzib177G0642 Durio zibethinus HOM05D002930 ORTHO05D003283 1.1e-102 377.1 270 67.4
Medtr7g113930 Medicago truncatula HOM05D002930 ORTHO05D003283 1.5e-102 376.7 270 66.3
Thecc.05G299700 Theobroma cacao HOM05D002930 ORTHO05D003283 1.5e-102 376.7 270 67.8
PGR083G0736 Punica granatum HOM05D002930 ORTHO05D003283 3.3e-102 375.6 265 68.3
Actinidia05730 Actinidia chinensis HOM05D002930 ORTHO05D003283 9.5e-102 374.0 268 67.9
CAN.G956.11 Capsicum annuum HOM05D002930 ORTHO05D003283 2.1e-101 372.9 265 67.2
Thecc.01G286000 Theobroma cacao HOM05D002930 ORTHO05D003283 2.1e-101 372.9 266 69.2
TPR.G33213 Trifolium pratense HOM05D002930 ORTHO05D003283 2.1e-101 372.9 270 65.9
Dinv11268 Davidia involucrata HOM05D002930 ORTHO05D003283 2.8e-101 372.5 265 67.9
PSO210G3942 Papaver somniferum HOM05D002930 ORTHO05D003283 3.6e-101 372.1 263 68.1
Actinidia21089 Actinidia chinensis HOM05D002930 ORTHO05D003283 6.2e-101 371.3 270 65.2
Lj1g0027310 Lotus japonicus HOM05D002930 ORTHO05D003283 8.1e-101 370.9 270 65.9
CANSAT54G0439 Cannabis sativa HOM05D002930 ORTHO05D003283 1.1e-100 370.5 255 70.2
Eucgr.H01545 Eucalyptus grandis HOM05D002930 ORTHO05D003283 1.1e-100 370.5 266 67.3
unitig_744.g24487 Utricularia gibba HOM05D002930 ORTHO05D003283 1.4e-100 370.2 266 66.9
TWI59G1251 Tripterygium wilfordii HOM05D002930 ORTHO05D003283 1.8e-100 369.8 266 66.9
Manes.05G071700 Manihot esculenta HOM05D002930 ORTHO05D003283 4.0e-100 368.6 266 67.3
Prupe.8G248000 Prunus persica HOM05D002930 ORTHO05D003283 4.0e-100 368.6 266 68.4
PGSC0003DMG400003809 Solanum tuberosum HOM05D002930 ORTHO05D003283 4.0e-100 368.6 266 67.3
PSO170G5253 Papaver somniferum HOM05D002930 ORTHO05D003283 5.2e-100 368.2 262 69.1
PSO302G0276 Papaver somniferum HOM05D002930 ORTHO05D003283 5.2e-100 368.2 262 69.1
Phvul.006G095000 Phaseolus vulgaris HOM05D002930 ORTHO05D003283 5.2e-100 368.2 270 65.6
Gohir.D13G110000 Gossypium hirsutum HOM05D002930 ORTHO05D003283 6.8e-100 367.9 265 67.5
SGA_v2.0_scaffold172G39040 Striga asiatica HOM05D002930 ORTHO05D003283 6.8e-100 367.9 268 65.3
Ah.08g212870 Amaranthus hybridus HOM05D002930 ORTHO05D003283 1.2e-99 367.1 266 65.4
Solyc09g074110.4 Solanum lycopersicum HOM05D002930 ORTHO05D003283 1.2e-99 367.1 266 66.9
Sopen09g028930 Solanum pennellii HOM05D002930 ORTHO05D003283 1.2e-99 367.1 266 67.3
Gorai.013G123400 Gossypium raimondii HOM05D002930 ORTHO05D003283 1.5e-99 366.7 265 67.5
Glyma.19G238300 Glycine max HOM05D002930 ORTHO05D003283 2.0e-99 366.3 270 65.6
Gohir.A13G106800 Gossypium hirsutum HOM05D002930 ORTHO05D003283 2.0e-99 366.3 265 67.2
COL.COLO4_13526 Corchorus olitorius HOM05D002930 ORTHO05D003283 2.6e-99 365.9 265 66.0
CSS0004978 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D003283 3.4e-99 365.5 270 64.4
Cc02_g32570 Coffea canephora HOM05D002930 ORTHO05D003283 3.4e-99 365.5 265 65.7
MD03G1271800 Malus domestica HOM05D002930 ORTHO05D003283 3.4e-99 365.5 266 68.4
DCAR_022250 Daucus carota HOM05D002930 ORTHO05D003283 4.4e-99 365.2 262 66.8
Lj5g0012178 Lotus japonicus HOM05D002930 ORTHO05D003283 4.4e-99 365.2 265 69.4
Nitab4.5_0002927g0030 Nicotiana tabacum HOM05D002930 ORTHO05D003283 4.4e-99 365.2 260 68.5
EL10Ac7g17191 Beta vulgaris HOM05D002930 ORTHO05D003283 5.8e-99 364.8 266 63.5
Peaxi162Scf00941g00113 Petunia axillaris HOM05D002930 ORTHO05D003283 5.8e-99 364.8 259 67.6
Phvul.007G168500 Phaseolus vulgaris HOM05D002930 ORTHO05D003283 5.8e-99 364.8 265 69.1
GSVIVG01011059001 Vitis vinifera HOM05D002930 ORTHO05D003283 5.8e-99 364.8 266 67.3
VMungo0540G0500 Vigna mungo HOM05D002930 ORTHO05D003283 7.6e-99 364.4 270 65.2
Glyma.02G150200 Glycine max HOM05D002930 ORTHO05D003283 9.9e-99 364.0 265 68.3
CSS0043122 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D003283 1.3e-98 363.6 265 67.5
Medtr1g089760 Medicago truncatula HOM05D002930 ORTHO05D003283 1.3e-98 363.6 267 67.8
Glyma.10G023700 Glycine max HOM05D002930 ORTHO05D003283 1.7e-98 363.2 265 68.7
TPR.G13301 Trifolium pratense HOM05D002930 ORTHO05D003283 2.2e-98 362.8 267 67.8
Cfa006078 Carpinus fangiana HOM05D002930 ORTHO05D003283 2.9e-98 362.5 266 67.7
Lj9C680G12 Lonicera japonica HOM05D002930 ORTHO05D003283 2.9e-98 362.5 324 58.0
AUR62036777 Chenopodium quinoa HOM05D002930 ORTHO05D003283 3.8e-98 362.1 267 64.8
Atru.chr5.1328 Acer truncatum HOM05D002930 ORTHO05D003283 4.9e-98 361.7 266 66.9
Duzib138G0507 Durio zibethinus HOM05D002930 ORTHO05D003283 4.9e-98 361.7 270 67.8
SalBow3G3307 Salvia bowleyana HOM05D002930 ORTHO05D003283 4.9e-98 361.7 263 66.2
Potri.014G137200 Populus trichocarpa HOM05D002930 ORTHO05D003283 6.4e-98 361.3 267 67.0
QL12p022973 Quercus lobata HOM05D002930 ORTHO05D003283 6.4e-98 361.3 265 67.2
arahy.Tifrunner.gnm1.ann1.HQA39L Arachis hypogaea HOM05D002930 ORTHO05D003283 1.4e-97 360.1 265 64.5
arahy.Tifrunner.gnm1.ann1.MJP89X Arachis hypogaea HOM05D002930 ORTHO05D003283 1.4e-97 360.1 265 64.5
AUR62033688 Chenopodium quinoa HOM05D002930 ORTHO05D003283 1.4e-97 360.1 267 64.0
MD11G1292400 Malus domestica HOM05D002930 ORTHO05D003283 1.4e-97 360.1 266 67.3
DCAR_018381 Daucus carota HOM05D002930 ORTHO05D003283 1.9e-97 359.8 269 64.7
Oeu047489.1 Olea europaea HOM05D002930 ORTHO05D003283 2.4e-97 359.4 270 65.9
FvH4_2g24180 Fragaria vesca HOM05D002930 ORTHO05D003283 3.2e-97 359.0 267 66.3
Gorai.004G215100 Gossypium raimondii HOM05D002930 ORTHO05D003283 3.2e-97 359.0 269 67.3
Hund05360 Selenicereus undatus HOM05D002930 ORTHO05D003283 3.2e-97 359.0 267 66.7
Gohir.A08G184940 Gossypium hirsutum HOM05D002930 ORTHO05D003283 4.2e-97 358.6 269 67.3
SGA_v2.0_scaffold11G05785 Striga asiatica HOM05D002930 ORTHO05D003283 4.2e-97 358.6 265 66.0
FAN27G1593 Fragaria x ananassa HOM05D002930 ORTHO05D003283 5.4e-97 358.2 267 66.3
MSTRG.17432 Avicennia marina HOM05D002930 ORTHO05D003283 7.1e-97 357.8 263 65.4
DCAR_012456 Daucus carota HOM05D002930 ORTHO05D003283 7.1e-97 357.8 264 64.8
arahy.Tifrunner.gnm1.ann1.M1RB0X Arachis hypogaea HOM05D002930 ORTHO05D003283 1.6e-96 356.7 267 67.0
FAN24G0623 Fragaria x ananassa HOM05D002930 ORTHO05D003283 1.6e-96 356.7 267 65.9
Lalb_Chr21g0306621 Lupinus albus HOM05D002930 ORTHO05D003283 1.6e-96 356.7 267 66.7
Psat6g169840 Pisum sativum HOM05D002930 ORTHO05D003283 2.1e-96 356.3 267 66.3
Rhsim01G0277900 Rhododendron simsii HOM05D002930 ORTHO05D003283 2.1e-96 356.3 265 65.3
SalBow6G0735 Salvia bowleyana HOM05D002930 ORTHO05D003283 2.1e-96 356.3 265 65.7
VMungo0720G1472 Vigna mungo HOM05D002930 ORTHO05D003283 2.7e-96 355.9 265 67.2
Ciclev10018445m.g Citrus clementina HOM05D002930 ORTHO05D003283 7.8e-96 354.4 260 66.5
RcHm_v2.0_Chr6g0291991 Rosa chinensis HOM05D002930 ORTHO05D003283 7.8e-96 354.4 267 66.3
arahy.Tifrunner.gnm1.ann1.K2UAY4 Arachis hypogaea HOM05D002930 ORTHO05D003283 1.0e-95 354.0 267 66.7
Gohir.D08G203100 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.0e-95 354.0 269 66.2
FAN15G2723 Fragaria x ananassa HOM05D002930 ORTHO05D003283 1.3e-95 353.6 267 65.9
vmacro14944 Vaccinium macrocarpon HOM05D002930 ORTHO05D003283 3.9e-95 352.1 266 65.0
ECA247G2962 Erigeron canadensis HOM05D002930 ORTHO05D003283 6.6e-95 351.3 265 64.5
ECA236G2879 Erigeron canadensis HOM05D002930 ORTHO05D003283 8.7e-95 350.9 265 64.5
CSS0023451 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D003283 1.2e-93 347.1 263 65.0
CANSAT25G2793 Cannabis sativa HOM05D002930 ORTHO05D003283 2.1e-93 346.3 266 65.4
Hma1.2p1_2318F.1_g319800 Hydrangea macrophylla HOM05D002930 ORTHO05D003283 2.1e-93 346.3 265 64.9
Manes.09G162700 Manihot esculenta HOM05D002930 ORTHO05D003283 2.1e-93 346.3 264 65.5
THA.LOC104802222 Tarenaya hassleriana HOM05D002930 ORTHO05D003283 2.1e-93 346.3 266 62.0
HanXRQChr04g0117981 Helianthus annuus HOM05D002930 ORTHO05D003283 3.6e-93 345.5 265 63.4
Lsat_1_v5_gn_8_55460 Lactuca sativa HOM05D002930 ORTHO05D003283 8.1e-93 344.4 266 63.9
Sabra14G0103600 Salix brachista HOM05D002930 ORTHO05D003283 8.1e-93 344.4 297 60.3
Nitab4.5_0001323g0140 Nicotiana tabacum HOM05D002930 ORTHO05D003283 1.4e-92 343.6 248 67.3
CsaV3_7G028480 Cucumis sativus L. HOM05D002930 ORTHO05D003283 3.1e-92 342.4 265 63.4
Dinv40246 Davidia involucrata HOM05D002930 ORTHO05D003283 3.1e-92 342.4 250 66.4
HanXRQChr15g0466571 Helianthus annuus HOM05D002930 ORTHO05D003283 3.1e-92 342.4 271 62.4
Gorai.007G133300 Gossypium raimondii HOM05D002930 ORTHO05D003283 2.0e-91 339.7 262 64.9
MELO3C015874.2 Cucumis melo HOM05D002930 ORTHO05D003283 2.6e-91 339.3 265 63.4
Gohir.A11G119600 Gossypium hirsutum HOM05D002930 ORTHO05D003283 2.6e-91 339.3 262 64.5
Aa31LG10G16860 Aethionema arabicum HOM05D002930 ORTHO05D003283 4.4e-91 338.6 267 62.2
Sed0024970 Sechium edule HOM05D002930 ORTHO05D003283 4.4e-91 338.6 265 62.6
Sp4g29950 Schrenkiella parvula HOM05D002930 ORTHO05D003283 9.9e-91 337.4 267 62.2
Haze_04772 Corylus avellana HOM05D002930 ORTHO05D003283 2.2e-90 336.3 266 65.0
Aa31LG1G29470 Aethionema arabicum HOM05D002930 ORTHO05D003283 4.9e-90 335.1 272 60.7
BcaC02g12557 Brassica carinata HOM05D002930 ORTHO05D003283 8.4e-90 334.3 268 61.6
BNapus_Darmor_BZH_scaffold_188p00030 Brassica napus HOM05D002930 ORTHO05D003283 8.4e-90 334.3 268 61.6
BolSC55t61233H Brassica oleracea HOM05D002930 ORTHO05D003283 8.4e-90 334.3 268 61.6
BraA04t18952Z Brassica rapa HOM05D002930 ORTHO05D003283 1.1e-89 334.0 267 61.8
A04p35160 Brassica napus HOM05D002930 ORTHO05D003283 1.4e-89 333.6 267 61.8
A05p00070 Brassica napus HOM05D002930 ORTHO05D003283 1.9e-89 333.2 267 61.0
BraA05t19003Z Brassica rapa HOM05D002930 ORTHO05D003283 1.9e-89 333.2 267 61.0
AL4G47650 Arabidopsis lyrata HOM05D002930 ORTHO05D003283 5.4e-89 331.6 267 61.4
BolC4t28786H Brassica oleracea HOM05D002930 ORTHO05D003283 7.1e-89 331.3 267 61.8
AT2G48060 Arabidopsis thaliana HOM05D002930 ORTHO05D003283 9.3e-89 330.9 267 61.0
BcaB02g08731 Brassica carinata HOM05D002930 ORTHO05D003283 9.3e-89 330.9 267 60.3
ClCG09G006750 Citrullus lanatus HOM05D002930 ORTHO05D003283 2.7e-88 329.3 265 61.9
Aqoxy211s006 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 3.5e-88 328.9 211 72.0
Carub.0004s3076 Capsella rubella HOM05D002930 ORTHO05D003283 3.5e-88 328.9 267 61.0
Thhalv10001278m.g Eutrema salsugineum HOM05D002930 ORTHO05D003283 4.6e-88 328.6 267 60.7
HPP92_017201 Vanilla planifolia HOM05D002930 ORTHO05D003283 1.0e-87 327.4 269 61.7
Gohir.D11G124400 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.4e-81 307.0 243 64.2
SEGI_00362 Sequoiadendron giganteum HOM05D002930 ORTHO05D003283 1.4e-81 307.0 253 58.1
Mapoly0023s0171 Marchantia polymorpha HOM05D002930 ORTHO05D003283 2.3e-79 299.7 276 54.0
Pp3c9_13300 Physcomitrium patens HOM05D002930 ORTHO05D003283 1.3e-77 293.9 271 55.7
AagrBONN_evm.TU.Sc2ySwM_228.583 Anthoceros agrestis HOM05D002930 ORTHO05D003283 9.9e-75 284.3 267 52.4
Pp3c3_17170 Physcomitrium patens HOM05D002930 ORTHO05D003283 2.5e-73 279.6 260 53.8
Cpa.g.sc9.131 Carica papaya HOM05D002930 ORTHO05D003283 5.5e-73 278.5 226 59.3
Lsat_1_v5_gn_9_1821 Lactuca sativa HOM05D002930 ORTHO05D003283 1.3e-71 273.9 264 53.0
CiPaw.07G096200 Carya illinoinensis HOM05D002930 ORTHO05D003283 8.7e-71 271.2 170 76.5
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 2.8e-69 266.2 246 53.3
TAR375G0113 Trochodendron aralioides HOM05D002930 ORTHO05D003283 3.1e-68 262.7 195 68.7
SMO142G0015 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 1.5e-62 243.8 264 47.7
Lj1A43G57 Lonicera japonica HOM05D002930 ORTHO05D003283 1.3e-58 230.7 140 77.1
CBR_g45306 Chara braunii HOM05D002930 ORTHO05D000002 1.2e-56 224.2 241 46.9
Psat3g009520 Pisum sativum HOM05D002930 ORTHO05D003283 1.0e-47 194.5 186 52.7
MBI19_g46385_MAGBIO Magnolia biondii HOM05D002930 ORTHO05D003283 5.0e-42 175.6 94 87.2
Prupe.2G260500 Prunus persica HOM05D002930 ORTHO05D003283 1.2e-40 171.0 105 78.1
PGR119G1041 Punica granatum HOM05D002930 ORTHO05D003283 1.1e-28 131.3 122 54.9
Lj1A43T58 Lonicera japonica HOM05D002930 ORTHO05D003283 1.4e-28 131.0 125 52.0
SHI15436 Sapria himalayana HOM05D002930 ORTHO05D003283 7.0e-28 128.6 122 54.1
Cre09.g402108 Chlamydomonas reinhardtii HOM05D002930 ORTHO05D003283 2.0e-22 110.5 103 50.5
PGSC0003DMG400028939 Solanum tuberosum HOM05D002930 ORTHO05D003283 4.0e-07 59.7 47 51.1


User provided reference genes

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