Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 1.9e-171 605.9 341 100.0
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 3.2e-142 508.8 285 82.8
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 1.2e-122 443.7 280 73.6
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 3.4e-120 435.6 271 74.2
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 3.4e-120 435.6 284 71.5
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 7.6e-120 434.5 275 72.7
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 1.7e-119 433.3 276 72.8
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 1.7e-119 433.3 272 72.4
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 3.8e-119 432.2 275 71.6
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 1.4e-118 430.3 272 72.1
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 2.4e-118 429.5 276 71.7
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 2.4e-118 429.5 287 69.0
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 5.4e-118 428.3 272 71.7
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 5.4e-118 428.3 287 69.3
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 5.4e-118 428.3 287 69.3
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 1.2e-117 427.2 272 72.4
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 2.1e-117 426.4 283 68.9
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 3.5e-117 425.6 276 71.0
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 4.6e-117 425.2 285 69.8
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 6.0e-117 424.9 268 72.0
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 1.7e-116 423.3 291 67.7
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 1.7e-116 423.3 282 70.2
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 3.9e-116 422.2 282 69.1
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 5.1e-116 421.8 287 66.6
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 6.6e-116 421.4 287 69.0
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 8.7e-116 421.0 282 68.4
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 1.1e-115 420.6 285 67.0
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.9e-115 419.9 272 69.5
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 1.9e-115 419.9 282 68.1
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 1.9e-115 419.9 267 71.9
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 4.3e-115 418.7 287 68.6
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 5.6e-115 418.3 288 67.4
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 9.6e-115 417.5 273 68.5
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 2.1e-114 416.4 282 68.4
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 2.8e-114 416.0 267 71.2
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 6.2e-114 414.8 282 67.7
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 8.1e-114 414.5 284 68.0
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 1.1e-113 414.1 287 67.6
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 1.8e-113 413.3 269 69.5
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 1.8e-113 413.3 268 71.6
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 3.1e-113 412.5 276 70.3
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 3.1e-113 412.5 282 67.7
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 3.1e-113 412.5 285 67.4
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 5.3e-113 411.8 283 68.9
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 6.9e-113 411.4 287 67.9
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 6.9e-113 411.4 280 67.5
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 1.2e-112 410.6 276 69.2
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 1.2e-112 410.6 291 67.4
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 2.6e-112 409.5 287 67.2
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 4.4e-112 408.7 287 66.6
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 2.2e-111 406.4 267 69.7
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.2e-111 406.4 274 68.6
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 8.4e-111 404.4 263 71.1
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 8.4e-111 404.4 267 69.7
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 8.4e-111 404.4 287 66.6
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 8.4e-111 404.4 282 66.3
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 4.2e-110 402.1 268 69.8
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 5.4e-110 401.7 284 65.8
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 5.4e-110 401.7 277 67.9
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 1.2e-109 400.6 262 69.8
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 2.1e-109 399.8 276 68.1
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 4.6e-109 398.7 300 63.3
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 6.0e-109 398.3 273 68.9
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 5.1e-108 395.2 275 69.5
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 1.1e-107 394.0 301 63.1
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 1.1e-107 394.0 263 68.8
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 1.5e-107 393.7 276 67.4
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 4.3e-107 392.1 272 66.5
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 9.6e-107 391.0 263 68.4
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.3e-106 390.6 291 63.9
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 1.6e-106 390.2 269 67.7
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.6e-106 390.2 262 67.6
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 2.8e-106 389.4 266 68.4
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 4.8e-106 388.7 260 68.8
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 6.2e-106 388.3 270 67.4
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 6.2e-106 388.3 290 63.1
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 6.2e-106 388.3 262 67.9
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 6.2e-106 388.3 265 68.3
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 8.1e-106 387.9 263 67.3
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 1.4e-105 387.1 276 66.7
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 1.8e-105 386.7 260 69.2
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 4.0e-105 385.6 269 67.3
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 4.0e-105 385.6 263 67.7
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 4.0e-105 385.6 285 64.6
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 2.6e-104 382.9 260 69.2
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 7.6e-104 381.3 262 66.4
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 1.7e-103 380.2 284 63.4
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 1.7e-103 380.2 270 65.2
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 6.4e-103 378.3 284 62.7
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 8.4e-103 377.9 283 64.3
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 1.4e-102 377.1 264 65.9
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 1.9e-102 376.7 289 62.6
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 2.1e-101 373.2 267 68.9
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 3.5e-101 372.5 284 62.3
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 4.6e-101 372.1 284 62.0
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 7.9e-101 371.3 259 67.6
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 1.0e-100 370.9 284 62.0
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 3.9e-100 369.0 269 64.7
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 3.3e-99 365.9 287 63.1
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 5.6e-99 365.2 281 62.3
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 7.4e-99 364.8 277 62.5
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 2.1e-98 363.2 276 62.7
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 1.2e-96 357.5 262 63.7
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 2.0e-96 356.7 289 59.9
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 2.0e-96 356.7 279 60.6
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 1.3e-95 354.0 284 60.2
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 3.8e-95 352.4 224 72.8
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 6.5e-95 351.7 271 63.1
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 1.4e-94 350.5 229 70.3
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 4.8e-90 335.5 323 54.2
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 8.2e-90 334.7 323 54.2
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 1.1e-89 334.3 264 60.6
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 3.1e-89 332.8 309 56.6
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 1.5e-88 330.5 287 56.8
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 1.3e-87 327.4 314 53.8
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 2.9e-87 326.2 288 58.0
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 5.0e-87 325.5 262 60.3
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 1.4e-86 323.9 258 58.1
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 9.3e-86 321.2 231 64.9
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 1.2e-85 320.9 258 57.4
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 4.3e-83 312.4 272 54.0
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 2.8e-82 309.7 215 67.9
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 6.3e-82 308.5 302 50.7
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 2.9e-79 299.7 282 52.5
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 1.1e-78 297.7 263 57.0
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 1.2e-77 294.3 263 54.8
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 1.6e-77 293.9 187 73.3
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 6.1e-77 292.0 285 49.8
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 1.1e-75 287.7 200 68.0
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 4.4e-75 285.8 264 52.7
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 5.0e-71 272.3 276 51.1
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.1e-70 271.2 276 50.7
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 7.2e-70 268.5 296 48.3
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 3.6e-69 266.2 296 48.0
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.3e-68 263.5 288 49.0
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 3.9e-68 262.7 265 50.6
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 2.6e-67 260.0 286 48.6
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 1.4e-65 254.2 158 74.1
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 1.8e-65 253.8 328 42.7
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 5.0e-63 245.7 170 68.2
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.2e-59 234.6 190 63.2
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.5e-59 234.2 190 62.6
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.5e-59 234.2 150 72.0
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 9.7e-59 231.5 170 64.7
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 2.2e-58 230.3 150 71.3
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 1.1e-57 228.0 158 66.5
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 1.4e-57 227.6 173 64.2
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 4.1e-57 226.1 503 31.4
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 9.1e-57 224.9 169 63.3
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 3.5e-56 223.0 148 70.3
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 3.5e-56 223.0 181 60.8
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 7.7e-56 221.9 170 64.1
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 2.9e-55 219.9 258 41.9
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 5.5e-54 215.7 247 47.8
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 3.7e-50 203.0 270 41.5
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 1.4e-49 201.1 344 32.8
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 1.8e-44 184.1 113 69.0
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 5.2e-44 182.6 111 73.0
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.2e-43 181.4 129 62.8
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 7.5e-43 178.7 133 64.7
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.2e-40 171.4 106 71.7
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 6.6e-39 165.6 129 58.1
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 1.2e-37 161.4 108 64.8
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 3.6e-37 159.8 113 66.4
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 2.3e-36 157.1 104 69.2
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.7e-31 141.0 186 43.5
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 8.6e-31 138.7 83 74.7
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 8.6e-31 138.7 83 74.7
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 2.8e-29 133.7 94 64.9
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 3.1e-28 130.2 138 48.6
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 1.5e-27 127.9 90 63.3
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 1.6e-24 117.9 97 57.7
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 3.2e-17 93.6 67 61.2
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 5.4e-17 92.8 51 86.3
SEGI_13555 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 5.1e-15 86.3 72 51.4
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 3.3e-14 83.6 56 64.3
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.1e-12 78.6 51 64.7
Medtr8g027510 Medicago truncatula HOM05D003864 ORTHO05D004658 3.2e-09 67.0 37 86.5
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 6.0e-08 62.8 45 60.0
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 5.1e-07 59.7 40 62.5


User provided reference genes

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