Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0363600 Oryza sativa ssp. japonica HOM05D006670 ORTHO05D008715 4.4e-101 371.3 190 100.0
Zm00001eb341310 Zea mays HOM05D006670 ORTHO05D008715 1.4e-59 233.4 142 85.9
MBI10_g16834_MAGBIO Magnolia biondii HOM05D006670 ORTHO05D008715 4.0e-46 188.7 140 65.0
MELO3C006346.2 Cucumis melo HOM05D006670 ORTHO05D008715 3.2e-43 179.1 144 61.1
CsaV3_3G011380 Cucumis sativus L. HOM05D006670 ORTHO05D008715 3.2e-43 179.1 144 60.4
Rhsim09G0046600 Rhododendron simsii HOM05D006670 ORTHO05D008715 4.2e-43 178.7 136 66.2
ClCG05G003670 Citrullus lanatus HOM05D006670 ORTHO05D008715 5.5e-43 178.3 144 59.7
RhsimUnG0181700 Rhododendron simsii HOM05D006670 ORTHO05D008715 1.2e-42 177.2 136 65.4
RcHm_v2.0_Chr4g0396631 Rosa chinensis HOM05D006670 ORTHO05D008715 2.7e-42 176.0 141 59.6
MD13G1229700 Malus domestica HOM05D006670 ORTHO05D008715 3.5e-42 175.6 147 57.8
Rhsim09G0047600 Rhododendron simsii HOM05D006670 ORTHO05D008715 4.6e-42 175.3 142 62.7
Prupe.1G056900 Prunus persica HOM05D006670 ORTHO05D008715 6.0e-42 174.9 141 60.3
TAR636G1307 Trochodendron aralioides HOM05D006670 ORTHO05D008715 6.0e-42 174.9 136 61.0
Glyma.10G127400 Glycine max HOM05D006670 ORTHO05D008715 1.3e-41 173.7 144 61.8
Phvul.007G238000 Phaseolus vulgaris HOM05D006670 ORTHO05D008715 1.3e-41 173.7 147 61.2
vmacro00519 Vaccinium macrocarpon HOM05D006670 ORTHO05D008715 1.3e-41 173.7 174 54.6
FvH4_4g05510 Fragaria vesca HOM05D006670 ORTHO05D008715 1.8e-41 173.3 140 58.6
Sed0004390 Sechium edule HOM05D006670 ORTHO05D008715 3.9e-41 172.2 132 64.4
Aqoxy2G03824 Aquilegia oxysepala HOM05D006670 ORTHO05D008715 6.7e-41 171.4 140 57.1
PGR083G1840 Punica granatum HOM05D006670 ORTHO05D008715 6.7e-41 171.4 136 61.8
CSS0047689 Camellia sinensis var. sinensis HOM05D006670 ORTHO05D008715 8.7e-41 171.0 140 59.3
DCAR_024309 Daucus carota HOM05D006670 ORTHO05D008715 8.7e-41 171.0 147 57.8
FAN22G1637 Fragaria x ananassa HOM05D006670 ORTHO05D008715 8.7e-41 171.0 140 57.9
Haze_11539 Corylus avellana HOM05D006670 ORTHO05D008715 1.1e-40 170.6 140 58.6
FAN07G0632 Fragaria x ananassa HOM05D006670 ORTHO05D008715 1.1e-40 170.6 140 57.9
Rhsim09G0047300 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.1e-40 170.6 142 62.0
CSS0048127 Camellia sinensis var. sinensis HOM05D006670 ORTHO05D008715 1.5e-40 170.2 140 58.6
Cfa014868 Carpinus fangiana HOM05D006670 ORTHO05D008715 1.5e-40 170.2 140 58.6
Manes.15G049800 Manihot esculenta HOM05D006670 ORTHO05D008715 1.9e-40 169.9 136 59.6
Potri.003G174400 Populus trichocarpa HOM05D006670 ORTHO05D008715 3.3e-40 169.1 145 55.9
FAN12G2738 Fragaria x ananassa HOM05D006670 ORTHO05D008715 4.3e-40 168.7 140 57.1
PSO063G6527 Papaver somniferum HOM05D006670 ORTHO05D008715 5.6e-40 168.3 138 59.4
Ciclev10005609m.g Citrus clementina HOM05D006670 ORTHO05D008715 7.4e-40 167.9 133 62.4
PSO017G1158 Papaver somniferum HOM05D006670 ORTHO05D008715 1.3e-39 167.2 132 59.1
CiPaw.01G205600 Carya illinoinensis HOM05D006670 ORTHO05D008715 1.6e-39 166.8 133 59.4
Migut.G00614 Erythranthe guttata HOM05D006670 ORTHO05D008715 1.6e-39 166.8 147 57.1
HanXRQChr01g0022661 Helianthus annuus HOM05D006670 ORTHO05D008715 1.6e-39 166.8 148 56.1
Sabra03G0127900 Salix brachista HOM05D006670 ORTHO05D008715 2.1e-39 166.4 145 55.2
VMungo0720G2028 Vigna mungo HOM05D006670 ORTHO05D008715 2.1e-39 166.4 148 59.5
COL.COLO4_05724 Corchorus olitorius HOM05D006670 ORTHO05D008715 2.8e-39 166.0 136 58.1
CARHR100200 Cardamine hirsuta HOM05D006670 ORTHO05D008715 3.7e-39 165.6 132 62.1
QL06p022765 Quercus lobata HOM05D006670 ORTHO05D008715 3.7e-39 165.6 136 58.8
arahy.Tifrunner.gnm1.ann1.M1QCRY Arachis hypogaea HOM05D006670 ORTHO05D008715 6.2e-39 164.9 129 61.2
Gohir.A10G120500 Gossypium hirsutum HOM05D006670 ORTHO05D008715 6.2e-39 164.9 136 58.8
Ca_11808_v3 Cicer arietinum L. HOM05D006670 ORTHO05D008715 8.1e-39 164.5 138 58.7
Lj6g0025132 Lotus japonicus HOM05D006670 ORTHO05D008715 8.1e-39 164.5 148 55.4
Dinv27152 Davidia involucrata HOM05D006670 ORTHO05D008715 1.1e-38 164.1 142 54.9
arahy.Tifrunner.gnm1.ann1.CI907D Arachis hypogaea HOM05D006670 ORTHO05D008715 1.4e-38 163.7 129 60.5
CANSAT78G1187 Cannabis sativa HOM05D006670 ORTHO05D008715 1.4e-38 163.7 133 59.4
CDE01G0405 Ceratophyllum demersum HOM05D007853 ORTHO05D009873 1.4e-38 163.7 133 59.4
Ah.04g153360 Amaranthus hybridus HOM05D006670 ORTHO05D008715 1.8e-38 163.3 147 55.8
Gorai.011G163000 Gossypium raimondii HOM05D006670 ORTHO05D008715 2.4e-38 162.9 136 58.1
Gohir.D10G145900 Gossypium hirsutum HOM05D006670 ORTHO05D008715 4.0e-38 162.2 136 57.4
Lalb_Chr01g0011161 Lupinus albus HOM05D006670 ORTHO05D008715 4.0e-38 162.2 132 59.1
Psat6g047400 Pisum sativum HOM05D006670 ORTHO05D008715 4.0e-38 162.2 146 54.8
Lsat_1_v5_gn_0_4721 Lactuca sativa HOM05D006670 ORTHO05D008715 5.3e-38 161.8 139 55.4
ATR0787G198 Amborella trichopoda HOM05D006670 ORTHO05D008715 6.9e-38 161.4 130 57.7
SGA_v2.0_scaffold57G20164 Striga asiatica HOM05D006670 ORTHO05D008715 6.9e-38 161.4 137 59.1
Thecc.04G214700 Theobroma cacao HOM05D006670 ORTHO05D008715 6.9e-38 161.4 133 58.6
TPR.G11296 Trifolium pratense HOM05D006670 ORTHO05D008715 6.9e-38 161.4 138 58.7
Carub.0003s2449 Capsella rubella HOM05D006670 ORTHO05D008715 9.0e-38 161.0 132 59.1
Manes.03G154700 Manihot esculenta HOM05D006670 ORTHO05D008715 9.0e-38 161.0 136 58.1
AL3G39350 Arabidopsis lyrata HOM05D006670 ORTHO05D008715 1.2e-37 160.6 132 59.1
BcaB06g26594 Brassica carinata HOM05D006670 ORTHO05D008715 1.2e-37 160.6 141 56.7
Medtr1g046790 Medicago truncatula HOM05D006670 ORTHO05D008715 1.2e-37 160.6 139 58.3
BraA07t28607Z Brassica rapa HOM05D006670 ORTHO05D008715 1.5e-37 160.2 129 60.5
Sp3g21930 Schrenkiella parvula HOM05D006670 ORTHO05D008715 1.5e-37 160.2 132 60.6
Atru.chr4.1814 Acer truncatum HOM05D006670 ORTHO05D008715 2.0e-37 159.8 142 56.3
Duzib212G0230 Durio zibethinus HOM05D006670 ORTHO05D008715 2.0e-37 159.8 136 58.1
A07p08240 Brassica napus HOM05D006670 ORTHO05D008715 3.4e-37 159.1 129 59.7
Cpa.g.sc59.72 Carica papaya HOM05D006670 ORTHO05D008715 3.4e-37 159.1 132 56.8
SEGI_39672 Sequoiadendron giganteum HOM05D006670 ORTHO05D008715 3.4e-37 159.1 139 57.6
Medtr1g046510 Medicago truncatula HOM05D006670 ORTHO05D008715 4.5e-37 158.7 139 58.3
Sopen05g031980 Solanum pennellii HOM05D006670 ORTHO05D008715 4.5e-37 158.7 128 59.4
Thhalv10002635m.g Eutrema salsugineum HOM05D006670 ORTHO05D008715 5.8e-37 158.3 132 57.6
AT3G24030 Arabidopsis thaliana HOM05D006670 ORTHO05D008715 7.6e-37 157.9 132 58.3
AUR62035928 Chenopodium quinoa HOM05D006670 ORTHO05D008715 2.2e-36 156.4 132 58.3
ECA248G0542 Erigeron canadensis HOM05D006670 ORTHO05D008715 2.2e-36 156.4 146 50.7
THA.LOC104808732 Tarenaya hassleriana HOM05D006670 ORTHO05D008715 4.9e-36 155.2 135 57.0
SHI00002 Sapria himalayana HOM05D006670 ORTHO05D008715 6.5e-36 154.8 153 50.3
AUR62035321 Chenopodium quinoa HOM05D006670 ORTHO05D008715 8.4e-36 154.5 132 56.8
BolC7t41764H Brassica oleracea HOM05D006670 ORTHO05D008715 1.4e-35 153.7 129 58.1
EL10Ac3g06772 Beta vulgaris HOM05D006670 ORTHO05D008715 3.2e-35 152.5 145 54.5
CAN.G305.17 Capsicum annuum HOM05D006670 ORTHO05D008715 3.2e-35 152.5 126 58.7
Peaxi162Scf00536g00711 Petunia axillaris HOM05D006670 ORTHO05D008715 5.5e-35 151.8 125 58.4
BcaC06g35628 Brassica carinata HOM05D006670 ORTHO05D008715 7.1e-35 151.4 129 58.1
C07p12780 Brassica napus HOM05D006670 ORTHO05D008715 7.1e-35 151.4 129 58.1
unitig_747.g21700 Utricularia gibba HOM05D006670 ORTHO05D008715 7.1e-35 151.4 128 60.9
Hund24851 Selenicereus undatus HOM05D006670 ORTHO05D008715 1.2e-34 150.6 139 53.2
Mapoly0087s0052 Marchantia polymorpha HOM05D006670 ORTHO05D008715 2.7e-34 149.4 152 51.3
Sc13g0002920 Simmondsia chinensis HOM05D006670 ORTHO05D008715 2.7e-34 149.4 139 51.8
MSTRG.4202 Avicennia marina HOM05D006670 ORTHO05D008715 4.6e-34 148.7 132 55.3
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 6.0e-34 148.3 136 53.7
SMO137G0262 Selaginella moellendorffii HOM05D006670 ORTHO05D008715 1.0e-33 147.5 128 60.2
Pp3c9_10780 Physcomitrium patens HOM05D006670 ORTHO05D008715 1.3e-33 147.1 139 53.2
Actinidia25088 Actinidia chinensis HOM05D006670 ORTHO05D008715 2.3e-33 146.4 110 66.4
Eucgr.H02870 Eucalyptus grandis HOM05D006670 ORTHO05D008715 3.9e-33 145.6 137 55.5
Lju414A3G25 Lonicera japonica HOM05D006670 ORTHO05D008715 3.7e-31 139.0 108 64.8
Nitab4.5_0012036g0010 Nicotiana tabacum HOM05D006670 ORTHO05D008715 3.7e-31 139.0 143 50.3
Nitab4.5_0001769g0060 Nicotiana tabacum HOM05D006670 ORTHO05D008715 4.8e-31 138.7 145 50.3
Cre06.g255350 Chlamydomonas reinhardtii HOM05D006670 ORTHO05D008715 1.4e-30 137.1 124 60.5
Nn3g19866 Nelumbo nucifera HOM05D006670 ORTHO05D008715 1.0e-28 131.0 102 63.7
PGSC0003DMG400027217 Solanum tuberosum HOM05D006670 ORTHO05D008715 1.3e-28 130.6 101 63.4
SMO134G0250 Selaginella moellendorffii HOM05D006670 ORTHO05D008715 1.7e-28 130.2 146 50.0
Dinv44414 Davidia involucrata HOM05D006670 ORTHO05D008715 1.9e-27 126.7 106 57.5
Oeu022324.1 Olea europaea HOM05D006670 ORTHO05D008715 3.2e-27 125.9 101 60.4
GSVIVG01029032001 Vitis vinifera HOM05D006670 ORTHO05D008715 5.7e-24 115.2 93 59.1
Cc03_g07080 Coffea canephora HOM05D006670 ORTHO05D008715 4.8e-23 112.1 94 58.5
Psat7g020640 Pisum sativum HOM05D006670 ORTHO05D008715 1.0e-20 104.4 110 50.9
Psat4g139560 Pisum sativum HOM05D006670 ORTHO05D000720 6.5e-20 101.7 110 49.1
Psat0s5229g0080 Pisum sativum HOM05D006670 ORTHO05D006513 2.4e-14 83.2 87 48.3
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 4.8e-07 58.9 133 32.3
Sabra01G0038200 Salix brachista HOM05D006670 ORTHO05D349611 7.0e-06 55.1 103 35.0


User provided reference genes

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